Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionO13329
DateMon Jul 2 19:10:05 BST 2012
Unique Job ID938146df6a231f86

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3f9kV_
Top template information
PDB header:viral protein, recombination
Chain: V: PDB Molecule:integrase;
PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd
Confidence and coverage
Confidence:100.0% Coverage: 32%
183 residues ( 32% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
252 residues ( 45%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTKPRYNDVLFDDDDSVPSESVTRKSQRRKATSPGESRESSKDRLLILPSMGESYTEYVD
Secondary structure 
SS confidence 
Disorder  ??????
???????????????????????????????
????
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  SYLNLELLERGERETPIFLESLTRQLTQKIYELIKTKSLTADTLQQISDKYDGVVAENKL
Secondary structure 
SS confidence 
Disorder 
???
??
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LFLQRQYYVDDEGNVRDGRNNDKIYCEPKHVYDMVMATHLMNKHLRGKTLHSFLFSHFAN
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  ISHAIIDWVQQFCSKCNKKGKIKPLKEYKRPDMYDKLLPMERIHIEVFEPFNGEAIEGKY
Secondary structure 
SS confidence 
Disorder 
??????????????????????
???
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  SYVLLCRDYRSSFMWLLPLKSTKFKHLIPVVSSLFLTFARVPIFVTSSTLDKDDLYDICE
Secondary structure 
SS confidence 
Disorder 
?
???
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  EIASKYGLRIGLGLKSSARFHTGGILCIQYALNSYKKECLADWGKCLRYGPYRFNRRRNK
Secondary structure 
SS confidence 
Disorder 
???????????
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  RTKRKPVQVLLSEVPGHNAKFETKRERVIENTYSRNMFKMAGGKGLIYLEDVNTFALANE
Secondary structure 
SS confidence 
Disorder  ???
?????????
??
?
??
?
??????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  ADNSCNNNGILHNNNIGNDNFEEEVQKQFDLTEKNYIDEYDDLAHDSSEGEFEPNTLTPE
Secondary structure 
SS confidence 
Disorder  ???????
?
?
??????????????????
?????????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  EKPPHNVDEDRIESTGVAAPMQGTEEPEKGDQKESDGASQVDQSVEITRPETSYYQTLES
Secondary structure 
SS confidence 
Disorder  ??????????
????????????????????????????????
?
?
??
Disorder confidence 
 
   .........550.........560......
Sequence  PSTKRQKLDQQGNGDQTRDFGTSMEL
Secondary structure 
SS confidence 
Disorder  ???
??????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3f9k chain V

3D model

Region: 150 - 372
Aligned: 183
Modelled: 204
Confidence: 100.0%
Identity: 13%
PDB header:viral protein, recombination
Chain: V: PDB Molecule:integrase;
PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd

Phyre2

PDB 1k6y chain B

3D model

Region: 152 - 372
Aligned: 175
Modelled: 203
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase

Phyre2

PDB 3hpg chain C

3D model

Region: 152 - 372
Aligned: 182
Modelled: 203
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: C: PDB Molecule:integrase;
PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces

Phyre2

PDB 1c0m chain A

3D model

Region: 214 - 423
Aligned: 200
Modelled: 210
Confidence: 100.0%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:protein (integrase);
PDBTitle: crystal structure of rsv two-domain integrase

Phyre2

PDB 3l2t chain B

3D model

Region: 215 - 377
Aligned: 153
Modelled: 163
Confidence: 100.0%
Identity: 17%
PDB header:recombination/dna
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir)

Phyre2

PDB 1c0m chain A domain 2

3D model

Region: 213 - 372
Aligned: 150
Modelled: 160
Confidence: 100.0%
Identity: 13%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2

PDB 1asu chain A

3D model

Region: 214 - 366
Aligned: 143
Modelled: 153
Confidence: 100.0%
Identity: 10%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2

PDB 3dlr chain A

3D model

Region: 217 - 375
Aligned: 141
Modelled: 159
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase

Phyre2

PDB 1ex4 chain A

3D model

Region: 238 - 375
Aligned: 129
Modelled: 137
Confidence: 99.9%
Identity: 9%
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: hiv-1 integrase catalytic core and c-terminal domain

Phyre2

PDB 3kks chain B

3D model

Region: 238 - 372
Aligned: 128
Modelled: 135
Confidence: 99.9%
Identity: 9%
PDB header:dna binding protein
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii

Phyre2

PDB 1cxq chain A

3D model

Region: 215 - 355
Aligned: 129
Modelled: 141
Confidence: 99.9%
Identity: 12%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2

PDB 1hyv chain A

3D model

Region: 229 - 372
Aligned: 128
Modelled: 144
Confidence: 99.9%
Identity: 8%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2

PDB 3nf9 chain A

3D model

Region: 239 - 372
Aligned: 124
Modelled: 134
Confidence: 99.9%
Identity: 10%
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:integrase;
PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design

Phyre2

PDB 1exq chain A

3D model

Region: 219 - 372
Aligned: 133
Modelled: 154
Confidence: 99.9%
Identity: 8%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2

PDB 1c6v chain A

3D model

Region: 219 - 372
Aligned: 130
Modelled: 154
Confidence: 99.9%
Identity: 12%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: Retroviral integrase, catalytic domain

Phyre2

PDB 1bco chain A domain 2

3D model

Region: 215 - 370
Aligned: 150
Modelled: 154
Confidence: 98.7%
Identity: 17%
Fold: Ribonuclease H-like motif
Superfamily: Ribonuclease H-like
Family: mu transposase, core domain

Phyre2

PDB 1bco chain A

3D model

Region: 215 - 370
Aligned: 149
Modelled: 156
Confidence: 98.6%
Identity: 13%
PDB header:transposase
Chain: A: PDB Molecule:bacteriophage mu transposase;
PDBTitle: bacteriophage mu transposase core domain

Phyre2

PDB 3nnq chain A

3D model

Region: 141 - 203
Aligned: 62
Modelled: 63
Confidence: 97.8%
Identity: 15%
PDB header:viral protein
Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus
PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3

Phyre2

PDB 3hos chain A

3D model

Region: 238 - 337
Aligned: 100
Modelled: 100
Confidence: 86.9%
Identity: 6%
PDB header:transferase, dna binding protein/dna
Chain: A: PDB Molecule:transposable element mariner, complete cds;
PDBTitle: crystal structure of the mariner mos1 paired end complex with mg

Phyre2

PDB 1vdz chain A

3D model

Region: 241 - 258
Aligned: 18
Modelled: 18
Confidence: 26.7%
Identity: 33%
PDB header:hydrolase
Chain: A: PDB Molecule:a-type atpase subunit a;
PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3

Phyre2
1
c3f9kV_
2
c1k6yB_
3
c3hpgC_
4
c1c0mA_
5
c3l2tB_
6
d1c0ma2
7
d1asua_
8
c3dlrA_
9
c1ex4A_
10
c3kksB_
11
d1cxqa_
12
d1hyva_
13
c3nf9A_
14
d1exqa_
15
d1c6va_
16
d1bcoa2
17
c1bcoA_
18
c3nnqA_
19
c3hosA_
20
c1vdzA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3f9kV_
100.0 13 PDB header:viral protein, recombination
Chain: V: PDB Molecule:integrase;
PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd
2c1k6yB_
100.0 13 PDB header:transferase
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase
3c3hpgC_
100.0 16 PDB header:transferase
Chain: C: PDB Molecule:integrase;
PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces
4c1c0mA_
100.0 11 PDB header:transferase
Chain: A: PDB Molecule:protein (integrase);
PDBTitle: crystal structure of rsv two-domain integrase
5c3l2tB_
100.0 17 PDB header:recombination/dna
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir)
6d1c0ma2
100.0 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
7d1asua_
100.0 10 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
8c3dlrA_
100.0 18 PDB header:transferase
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase
9c1ex4A_
99.9 9 PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: hiv-1 integrase catalytic core and c-terminal domain
10c3kksB_
99.9 9 PDB header:dna binding protein
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii
11d1cxqa_
99.9 12 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
12d1hyva_
99.9 8 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
13c3nf9A_
99.9 10 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:integrase;
PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design
14d1exqa_
99.9 8 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
15d1c6va_
99.9 12 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
16d1bcoa2
98.7 17 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:mu transposase, core domain
17c1bcoA_
98.6 13 PDB header:transposase
Chain: A: PDB Molecule:bacteriophage mu transposase;
PDBTitle: bacteriophage mu transposase core domain
18c3nnqA_
97.8 15 PDB header:viral protein
Chain: A: PDB Molecule:n-terminal domain of moloney murine leukemia virus
PDBTitle: crystal structure of the n-terminal domain of moloney murine leukemia2 virus integrase, northeast structural genomics consortium target or3
19c3hosA_
86.9 6 PDB header:transferase, dna binding protein/dna
Chain: A: PDB Molecule:transposable element mariner, complete cds;
PDBTitle: crystal structure of the mariner mos1 paired end complex with mg
20c1vdzA_
26.7 33 PDB header:hydrolase
Chain: A: PDB Molecule:a-type atpase subunit a;
PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3
21d1e0ea_
not modelled 16.7 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
22d1gvha3
not modelled 14.1 38 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Flavohemoglobin, C-terminal domain
23d1k6ya1
not modelled 13.2 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
24d2b5dx1
not modelled 13.1 24 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:AmyC C-terminal domain-like
25d1wjfa_
not modelled 12.6 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
26d1ufaa1
not modelled 10.8 33 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:AmyC C-terminal domain-like
27d1fx0b3
not modelled 10.8 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
28c1cl4A_
not modelled 10.7 20 PDB header:viral protein
Chain: A: PDB Molecule:protein (gag polyprotein);
PDBTitle: nucleocapsid protein from mason-pfizer monkey virus (mpmv)
29d1dsva_
not modelled 9.2 27 Fold:Retrovirus zinc finger-like domains
Superfamily:Retrovirus zinc finger-like domains
Family:Retrovirus zinc finger-like domains
30c2p4eP_
not modelled 9.0 17 PDB header:hydrolase
Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: crystal structure of pcsk9
31c2w2mP_
not modelled 9.0 17 PDB header:hydrolase/receptor
Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: wt pcsk9-deltac bound to wt egf-a of ldlr
32c2pmwA_
not modelled 9.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: the crystal structure of proprotein convertase subtilisin2 kexin type 9 (pcsk9)
33d1skyb3
not modelled 8.6 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
34c2c61A_
not modelled 8.5 18 PDB header:hydrolase
Chain: A: PDB Molecule:a-type atp synthase non-catalytic subunit b;
PDBTitle: crystal structure of the non-catalytic b subunit of a-type2 atpase from m. mazei go1
35c3l0oB_
not modelled 7.9 12 PDB header:hydrolase
Chain: B: PDB Molecule:transcription termination factor rho;
PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima
36d2dlqa3
not modelled 7.8 38 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
37d1skye3
not modelled 7.8 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
38d1fx0a3
not modelled 7.7 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
39d1iwpa_
not modelled 7.7 11 Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:Diol dehydratase, alpha subunit
40d2jdia3
not modelled 7.6 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
41c1kmhA_
not modelled 7.6 18 PDB header:hydrolase
Chain: A: PDB Molecule:atpase alpha subunit;
PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin
42c2eqoA_
not modelled 7.5 21 PDB header:transcription
Chain: A: PDB Molecule:tnf receptor-associated factor 3-interacting
PDBTitle: solution structure of the stn_traf3ip1_nd domain of2 interleukin 13 receptor alpha 1-binding protein-1 [homo3 sapiens]
43c2dhyA_
not modelled 7.3 20 PDB header:immune system
Chain: A: PDB Molecule:cue domain-containing protein 1;
PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1)
44c1hsjA_
not modelled 7.1 12 PDB header:transcription/sugar binding protein
Chain: A: PDB Molecule:fusion protein consisting of staphylococcus
PDBTitle: sarr mbp fusion structure
45c2qe7C_
not modelled 7.1 18 PDB header:hydrolase
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1
46d1xpua3
not modelled 7.0 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
47c3oaaC_
not modelled 7.0 18 PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon
48c2oblA_
not modelled 6.9 29 PDB header:hydrolase
Chain: A: PDB Molecule:escn;
PDBTitle: structural and biochemical analysis of a prototypical atpase from the2 type iii secretion system of pathogenic bacteria
49d2jdid3
not modelled 6.9 36 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
50d1a6ca2
not modelled 6.8 20 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
51d1d5ya1
not modelled 6.7 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
52d1dq3a2
not modelled 6.7 8 Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:PI-Pfui intein middle domain
53c2r9vA_
not modelled 6.6 18 PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution
54c2w6fA_
not modelled 6.5 18 PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha heart isoform,
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 2.
55c2yiuE_
not modelled 6.5 18 PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
56c3a5dM_
not modelled 6.5 14 PDB header:hydrolase
Chain: M: PDB Molecule:v-type atp synthase beta chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
57c1gvhA_
not modelled 6.4 38 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavohemoprotein;
PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket
58c2kxsA_
not modelled 6.2 19 PDB header:protein binding
Chain: A: PDB Molecule:tight junction protein zo-1, linker, peptide of myocardium-
PDBTitle: zo1 zu5 domain in complex with grinl1a peptide
59c2jizD_
not modelled 5.9 36 PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta;
PDBTitle: the structure of f1-atpase inhibited by resveratrol.
60c2dpyA_
not modelled 5.9 29 PDB header:hydrolase
Chain: A: PDB Molecule:flagellum-specific atp synthase;
PDBTitle: crystal structure of the flagellar type iii atpase flii
61c2w6jD_
not modelled 5.8 36 PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta, mitochondrial;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5.
62c1w0jB_
not modelled 5.8 21 PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase alpha chain heart isoform,
PDBTitle: beryllium fluoride inhibited bovine f1-atpase
63c1fx0B_
not modelled 5.7 36 PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase beta chain;
PDBTitle: crystal structure of the chloroplast f1-atpase from spinach
64d1vk9a_
not modelled 5.7 13 Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Hypothetical protein TM1506
65d1gxha_
not modelled 5.7 19 Fold:Acyl carrier protein-like
Superfamily:Colicin E immunity proteins
Family:Colicin E immunity proteins
66c1ee8A_
not modelled 5.6 38 PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
67d1ayia_
not modelled 5.5 14 Fold:Acyl carrier protein-like
Superfamily:Colicin E immunity proteins
Family:Colicin E immunity proteins
68c1skyE_
not modelled 5.4 29 PDB header:atp synthase
Chain: E: PDB Molecule:f1-atpase;
PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3
69d1xgsa1
not modelled 5.4 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Methionine aminopeptidase, insert domain
70c2no8A_
not modelled 5.3 14 PDB header:immune system
Chain: A: PDB Molecule:colicin-e2 immunity protein;
PDBTitle: nmr structure analysis of the colicin immuntiy protein im2
71c3a5dB_
not modelled 5.3 29 PDB header:hydrolase
Chain: B: PDB Molecule:v-type atp synthase alpha chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite