PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2yiuE_

Fold library id	PDB Header	Molecule	Title
c2yiuE_	PDB header: oxidoreductase	Chain: E: PDB Molecule: cytochrome c1, heme protein;	PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution

Links to external resources
Added to library: Sat Oct 29 16:23:59 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D I S F S F E G P F G K F D Q H Q L Q R G L Q V Y T E V C S A C H G L R Y V P L R T L A D E G G P Q L P E D Q V R A Y A A N F D I T D P E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S T T
T T T T
T T
B G G G G G S T T S
T T
B
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E E D R P R V P T D H F P T V S G E G M G P D L S L M A K A R I G G P E Y I H A V L T G Y D G E E K V L Y H N A A F A G N W I Q M A A P L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T S B
S T T
T T
T
B
S
S S S S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . .

Sequence D D Q V T Y E D G T P A T V D Q M A T D V A A F L M W T A E P K M M D R K Q V G F V S V I F L I V L A A L L Y L T N K K L W Q P I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
T T
T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	I	S	F	S	F	E	G	P	F	G	K	F	D	Q	H	Q	L	Q	R	G	L	Q	V	Y	T	E	V	C	S	A	C	H	G	L	R	Y	V	P	L	R	T	L	A	D	E	G	G	P	Q	L	P	E	D	Q	V	R	A	Y	A	A	N	F	D	I	T	D	P	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S	S	T	T																			T	T	T	T				T	T		B	G	G	G	G	G	S	T	T	S													T	T		B				S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	E	D	R	P	R	V	P	T	D	H	F	P	T	V	S	G	E	G	M	G	P	D	L	S	L	M	A	K	A	R	I	G	G	P	E	Y	I	H	A	V	L	T	G	Y	D	G	E	E	K	V	L	Y	H	N	A	A	F	A	G	N	W	I	Q	M	A	A	P	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					B			T	T	S	B						S	T	T						T	T																	T		B		S									S	S	S	S	S				S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence	D	D	Q	V	T	Y	E	D	G	T	P	A	T	V	D	Q	M	A	T	D	V	A	A	F	L	M	W	T	A	E	P	K	M	M	D	R	K	Q	V	G	F	V	S	V	I	F	L	I	V	L	A	A	L	L	Y	L	T	N	K	K	L	W	Q	P	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	S			T	T																							T	T																															T	T	T