Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	T	H	I	S	P	L	G	S	M	D	M	L	S	Q	L	E	V	D	M	L	K	R	T	A	S	S	D	L	Y	Q	L	F	R	N	C	S	L	A	V	L	N	S	G	S	L	T	D	N	S	K	E	L	L	S	R	F	E	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?																																		?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	D	I	N	V	L	R	R	E	R	G	V	K	L	E	L	I	N	P	P	E	E	A	F	V	D	G	R	I	I	R	A	L	Q	A	N	L	F	A	V	L	R	D	I	L	F	V	Y	G	Q	I	H	N	T	V	R	F	P	N	L
Secondary structure
SS confidence
Disorder								?	?	?	?										?	?				?	?									?	?	?																	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	L	D	N	S	V	H	I	T	N	L	V	F	S	I	L	R	N	A	R	A	L	H	V	G	E	A	P	N	M	V	V	C	W	G	G	H	S	I	N	E	N	E	Y	L	Y	A	R	R	V	G	N	Q	L	G	L	R	E	L	N
Secondary structure
SS confidence
Disorder																							?	?	?																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	C	T	G	C	G	P	G	A	M	E	A	P	M	K	G	A	A	V	G	H	A	Q	Q	R	Y	K	D	S	R	F	I	G	M	T	E	P	S	I	I	A	A	E	P	P	N	P	L	V	N	E	L	I	I	M	P	D	I	E	K
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?	?	?												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		R	L	E	A	F	V	R	I	A	H	G	I	I	I	F	P	G	G	V	G	T	A	E	E	L	L	Y	L	L	G	I	L	M	N	P	A	N	K	D	Q	V	L	P	L	I	L	T	G	P	K	E	S	A	D	Y	F	R	V	L	D
Secondary structure
SS confidence
Disorder																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		E	F	V	V	H	T	L	G	E	N	A	R	R	H	Y	R	I	I	I	D	D	A	A	E	V	A	R	Q	M	K	K	S	M	P	L	V	K	E	N	R	R	D	T	G	D	A	Y	S	F	N	W	S	M	R	I	A	P	D	L	Q
Secondary structure
SS confidence
Disorder																																							?			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		M	P	F	E	P	S	H	E	N	M	A	N	L	K	L	Y	P	D	Q	P	V	E	V	L	A	A	D	L	R	R	A	F	S	G	I	V	A	G	N	V	K	E	V	G	I	R	A	I	E	E	F	G	P	Y	K	I	N	G	D	K
Secondary structure
SS confidence
Disorder											?			?	?		?	?																				?	?		?													?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Sequence		E	I	M	R	R	M	D	D	L	L	Q	G	F	V	A	Q	H	R	M	K	L	P	G	S	A	Y	I	P	C	Y	E	I	C	T
Secondary structure
SS confidence
Disorder																							?									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3bq9 chain A Region: 2 - 454 Aligned: 445 Modelled: 449 Confidence: 100.0% Identity: 62% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 Phyre2 PDB 3gh1 chain A Region: 1 - 454 Aligned: 440 Modelled: 454 Confidence: 100.0% Identity: 68% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae Phyre2 PDB 1wek chain A Region: 148 - 330 Aligned: 173 Modelled: 183 Confidence: 100.0% Identity: 25% Fold: MCP/YpsA-like Superfamily: MCP/YpsA-like Family: MoCo carrier protein-like Phyre2 PDB 1t35 chain A Region: 148 - 330 Aligned: 174 Modelled: 169 Confidence: 100.0% Identity: 17% Fold: MCP/YpsA-like Superfamily: MCP/YpsA-like Family: MoCo carrier protein-like Phyre2 PDB 2q4d chain B Region: 149 - 331 Aligned: 174 Modelled: 177 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 Phyre2 PDB 1ydh chain A Region: 149 - 331 Aligned: 174 Modelled: 177 Confidence: 100.0% Identity: 19% Fold: MCP/YpsA-like Superfamily: MCP/YpsA-like Family: MoCo carrier protein-like Phyre2 PDB 3qua chain A Region: 151 - 331 Aligned: 168 Modelled: 181 Confidence: 100.0% Identity: 19% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein and possible2 molybdenum cofactor protein from mycobacterium smegmatis Phyre2 PDB 3sbx chain C Region: 150 - 329 Aligned: 171 Modelled: 180 Confidence: 100.0% Identity: 20% PDB header:unknown function Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium marinum bound to adenosine 5'-monophosphate amp Phyre2 PDB 2q4o chain A domain 1 Region: 149 - 331 Aligned: 166 Modelled: 183 Confidence: 100.0% Identity: 22% Fold: MCP/YpsA-like Superfamily: MCP/YpsA-like Family: MoCo carrier protein-like Phyre2 PDB 2q4o chain A Region: 149 - 331 Aligned: 166 Modelled: 183 Confidence: 100.0% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210 Phyre2 PDB 1weh chain A Region: 148 - 332 Aligned: 168 Modelled: 184 Confidence: 100.0% Identity: 21% Fold: MCP/YpsA-like Superfamily: MCP/YpsA-like Family: MoCo carrier protein-like Phyre2 PDB 1rcu chain B Region: 149 - 331 Aligned: 157 Modelled: 180 Confidence: 99.9% Identity: 20% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein vt76; PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76 Phyre2 PDB 1rcu chain A Region: 149 - 331 Aligned: 157 Modelled: 180 Confidence: 99.9% Identity: 20% Fold: MCP/YpsA-like Superfamily: MCP/YpsA-like Family: MoCo carrier protein-like Phyre2 PDB 2iz6 chain A Region: 150 - 335 Aligned: 152 Modelled: 186 Confidence: 99.9% Identity: 22% PDB header:metal transport Chain: A: PDB Molecule:molybdenum cofactor carrier protein; PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein Phyre2 PDB 3maj chain A Region: 149 - 255 Aligned: 90 Modelled: 107 Confidence: 96.4% Identity: 18% PDB header:dna binding protein Chain: A: PDB Molecule:dna processing chain a; PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009 Phyre2 PDB 1o1x chain A Region: 126 - 195 Aligned: 62 Modelled: 70 Confidence: 82.8% Identity: 23% Fold: Ribose/Galactose isomerase RpiB/AlsB Superfamily: Ribose/Galactose isomerase RpiB/AlsB Family: Ribose/Galactose isomerase RpiB/AlsB Phyre2 PDB 1e19 chain A Region: 149 - 189 Aligned: 41 Modelled: 41 Confidence: 80.8% Identity: 29% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: Carbamate kinase Phyre2 PDB 3c5y chain D Region: 151 - 195 Aligned: 45 Modelled: 45 Confidence: 77.3% Identity: 18% PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution Phyre2 PDB 2ppw chain A Region: 151 - 195 Aligned: 45 Modelled: 45 Confidence: 75.3% Identity: 18% PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae Phyre2 PDB 3kzf chain C Region: 149 - 189 Aligned: 41 Modelled: 41 Confidence: 74.4% Identity: 20% PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase Phyre2 1 c3bq9A_ 2 c3gh1A_ 3 d1weka_ 4 d1t35a_ 5 c2q4dB_ 6 d1ydha_ 7 c3quaA_ 8 c3sbxC_ 9 d2q4oa1 10 c2q4oA_ 11 d1weha_ 12 c1rcuB_ 13 d1rcua_ 14 c2iz6A_ 15 c3majA_ 16 d1o1xa_ 17 d1e19a_ 18 c3c5yD_ 19 c2ppwA_ 20 c3kzfC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3bq9A_ 100.0 62 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 2 c3gh1A_ 100.0 68 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae 3 d1weka_ 100.0 25 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 4 d1t35a_ 100.0 17 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 5 c2q4dB_ 100.0 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 6 d1ydha_ 100.0 19 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 7 c3quaA_ 100.0 19 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein and possible2 molybdenum cofactor protein from mycobacterium smegmatis 8 c3sbxC_ 100.0 20 PDB header:unknown function Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium marinum bound to adenosine 5'-monophosphate amp 9 d2q4oa1 100.0 22 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 10 c2q4oA_ 100.0 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210 11 d1weha_ 100.0 21 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 12 c1rcuB_ 99.9 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein vt76; PDBTitle: x-ray structure of tm1055 northeast structural genomics2 consortium target vt76 13 d1rcua_ 99.9 20 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 14 c2iz6A_ 99.9 22 PDB header:metal transport Chain: A: PDB Molecule:molybdenum cofactor carrier protein; PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein 15 c3majA_ 96.4 18 PDB header:dna binding protein Chain: A: PDB Molecule:dna processing chain a; PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009 16 d1o1xa_ 82.8 23 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 17 d1e19a_ 80.8 29 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 18 c3c5yD_ 77.3 18 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 19 c2ppwA_ 75.3 18 PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae 20 c3kzfC_ 74.4 20 PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase 21 c2fzvC_ not modelled 71.4 15 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:putative arsenical resistance protein; PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri 22 c3l86A_ not modelled 69.3 19 PDB header:transferase Chain: A: PDB Molecule:acetylglutamate kinase; PDBTitle: the crystal structure of smu.665 from streptococcus mutans ua159 23 c3he8A_ not modelled 67.8 20 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 24 c2e9yA_ not modelled 60.7 24 PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 25 d1b7ba_ not modelled 59.0 27 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 26 d2btya1 not modelled 58.9 19 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 27 d2bufa1 not modelled 58.1 23 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 28 c2rd5A_ not modelled 55.3 18 PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 29 d2ij9a1 not modelled 53.9 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 30 c2ogxB_ not modelled 53.7 28 PDB header:metal binding protein Chain: B: PDB Molecule:molybdenum storage protein subunit beta; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 31 d2nu7b1 not modelled 50.8 7 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 32 c2w21A_ not modelled 50.7 16 PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. 33 c3nwyB_ not modelled 49.6 15 PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis 34 c2ekcA_ not modelled 49.5 24 PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 35 c3ek5A_ not modelled 49.0 10 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium 36 d2akoa1 not modelled 48.5 27 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 37 d1vhqa_ not modelled 45.1 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 38 c2l5aA_ not modelled 45.1 22 PDB header:nuclear protein Chain: A: PDB Molecule:histone h3-like centromeric protein cse4, protein scm3, PDBTitle: structural basis for recognition of centromere specific histone h32 variant by nonhistone scm3 39 c2jjxC_ not modelled 44.4 18 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: the crystal structure of ump kinase from bacillus anthracis2 (ba1797) 40 d2ocda1 not modelled 44.0 13 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 41 d1z9da1 not modelled 43.0 10 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 42 d1ikta_ not modelled 41.9 9 Fold:SCP-like Superfamily:SCP-like Family:Sterol carrier protein, SCP 43 c3bn8A_ not modelled 41.3 27 PDB header:transport protein Chain: A: PDB Molecule:putative sterol carrier protein 2; PDBTitle: crystal structure of a putative sterol carrier protein type 2 (af1534)2 from archaeoglobus fulgidus dsm 4304 at 2.11 a resolution 44 c3o8nA_ not modelled 40.3 10 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase, muscle type; PDBTitle: structure of phosphofructokinase from rabbit skeletal muscle 45 c3qd5B_ not modelled 39.8 15 PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr 46 c2egxA_ not modelled 39.7 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acetylglutamate kinase; PDBTitle: crystal structure of the putative acetylglutamate kinase from thermus2 thermophilus 47 d2fzva1 not modelled 38.9 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase 48 c2j5gL_ not modelled 38.6 15 PDB header:hydrolase Chain: L: PDB Molecule:alr4455 protein; PDBTitle: the native structure of a beta-diketone hydrolase from the2 cyanobacterium anabaena sp. pcc 7120 49 c3onoA_ not modelled 37.5 18 PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus 50 c2jzcA_ not modelled 36.0 8 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine transferase subunit PDBTitle: nmr solution structure of alg13: the sugar donor subunit of2 a yeast n-acetylglucosamine transferase. northeast3 structural genomics consortium target yg1 51 c2j5tF_ not modelled 35.5 17 PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate 52 d1oaoa_ not modelled 35.3 11 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 53 d2brxa1 not modelled 34.2 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 54 c3l3bA_ not modelled 33.6 24 PDB header:biosynthetic protein Chain: A: PDB Molecule:es1 family protein; PDBTitle: crystal structure of isoprenoid biosynthesis protein with2 amidotransferase-like domain from ehrlichia chaffeensis at 1.90a3 resolution 55 d1qopa_ not modelled 33.4 17 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 56 c3lo3E_ not modelled 32.9 13 PDB header:structure genomics, unknown function Chain: E: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown2 protein from colwellia psychrerythraea 34h. 57 c3m1pA_ not modelled 32.5 27 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate 58 c3k7pA_ not modelled 32.5 27 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. 59 c2jbwB_ not modelled 32.0 29 PDB header:hydrolase Chain: B: PDB Molecule:2,6-dihydroxy-pseudo-oxynicotine hydrolase; PDBTitle: crystal structure of the 2,6-dihydroxy-pseudo-oxynicotine2 hydrolase. 60 c2hihB_ not modelled 31.3 16 PDB header:hydrolase Chain: B: PDB Molecule:lipase 46 kda form; PDBTitle: crystal structure of staphylococcus hyicus lipase 61 c3l76B_ not modelled 30.8 20 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 62 c2va1A_ not modelled 28.6 18 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of ump kinase from ureaplasma parvum 63 d1nn4a_ not modelled 28.3 26 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 64 c2ogxA_ not modelled 28.0 30 PDB header:metal binding protein Chain: A: PDB Molecule:molybdenum storage protein subunit alpha; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 65 d2jbwa1 not modelled 28.0 27 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:2,6-dihydropseudooxynicotine hydrolase-like 66 c3ab4K_ not modelled 27.5 12 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 67 c3pm6B_ not modelled 27.4 14 PDB header:lyase Chain: B: PDB Molecule:putative fructose-bisphosphate aldolase; PDBTitle: crystal structure of a putative fructose-1,6-biphosphate aldolase from2 coccidioides immitis solved by combined sad mr 68 c2j4kC_ not modelled 27.3 21 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of uridylate kinase from sulfolobus2 solfataricus in complex with ump to 2.2 angstrom3 resolution 69 d1ojta1 not modelled 27.3 38 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 70 d1qvwa_ not modelled 27.2 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 71 d1q1ra2 not modelled 25.1 19 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 72 c1ibtC_ not modelled 24.8 38 PDB header:lyase Chain: C: PDB Molecule:histidine decarboxylase beta chain; PDBTitle: structure of the d53,54n mutant of histidine decarboxylase at-170 c 73 c2l8kA_ not modelled 24.7 23 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 7; PDBTitle: nmr structure of the arterivirus nonstructural protein 7 alpha (nsp72 alpha) 74 d2fiua1 not modelled 24.6 26 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Atu0297-like 75 d1djqa3 not modelled 23.5 38 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 76 d1lvla1 not modelled 23.5 38 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 77 c3nquA_ not modelled 23.2 34 PDB header:dna binding protein Chain: A: PDB Molecule:histone h3-like centromeric protein a; PDBTitle: crystal structure of partially trypsinized (cenp-a/h4)2 heterotetramer 78 d1hbnb1 not modelled 23.1 16 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 79 d4pgaa_ not modelled 22.6 29 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 80 d2pq6a1 not modelled 22.6 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 81 c3ll9A_ not modelled 22.5 20 PDB header:transferase Chain: A: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: x-ray structures of isopentenyl phosphate kinase 82 d3lada1 not modelled 22.3 46 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 83 d1mqsa_ not modelled 22.0 21 Fold:Sec1/munc18-like (SM) proteins Superfamily:Sec1/munc18-like (SM) proteins Family:Sec1/munc18-like (SM) proteins 84 c3opyB_ not modelled 22.0 21 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 85 c3opyH_ not modelled 22.0 21 PDB header:transferase Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 86 c3navB_ not modelled 21.8 16 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 87 d1id3a_ not modelled 21.4 30 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 88 d2j0wa1 not modelled 21.1 16 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 89 c1jqkE_ not modelled 21.1 11 PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase; PDBTitle: crystal structure of carbon monoxide dehydrogenase from2 rhodospirillum rubrum 90 d1jqka_ not modelled 21.1 11 Fold:Prismane protein-like Superfamily:Prismane protein-like Family:Carbon monoxide dehydrogenase 91 d1onfa1 not modelled 21.0 46 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 92 d1acoa2 not modelled 20.5 14 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 93 d1vdca1 not modelled 20.3 36 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 94 d2bona1 not modelled 20.3 26 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 95 d2bnea1 not modelled 20.2 10 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 96 d2jgra1 not modelled 20.2 30 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 97 c1z6gA_ not modelled 20.2 36 PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of guanylate kinase from plasmodium falciparum 98 c2vvyC_ not modelled 19.9 19 PDB header:viral protein Chain: C: PDB Molecule:protein b15; PDBTitle: structure of vaccinia virus protein b14 99 d2vvpa1 not modelled 19.8 18 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0