Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	A	K	I	L	S	G	V	L	L	L	C	F	S	S	P	L	I	S	Q	A	A	T	L	D	V	R	G	G	Y	R	S	G	S	H	A	Y	E	T	R	L	K	V	S	E	G	W	Q	N	G	W	W	A	S	M	E	S	N
Secondary structure
SS confidence
Disorder		?	?	?	?													?	?	?	?	?												?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	W	N	T	I	H	D	N	K	K	E	N	A	A	L	N	D	V	Q	V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		K	D	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y
Secondary structure
SS confidence
Disorder																	?	?	?	?	?	?	?	?	?	?	?	?	?																												?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Sequence		R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y	L	D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V	S	F	K	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?		?																										?	?	?	?	?	?	?	?	?	?	?		?											?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2wjq chain A Region: 24 - 238 Aligned: 205 Modelled: 215 Confidence: 100.0% Identity: 100% PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Phyre2 PDB 2iwv chain D Region: 33 - 237 Aligned: 200 Modelled: 205 Confidence: 98.3% Identity: 12% PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Phyre2 PDB 3qra chain A Region: 33 - 161 Aligned: 118 Modelled: 118 Confidence: 97.8% Identity: 14% PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis Phyre2 PDB 1g90 chain A Region: 50 - 236 Aligned: 159 Modelled: 159 Confidence: 97.6% Identity: 14% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 2f1t chain B Region: 91 - 237 Aligned: 147 Modelled: 147 Confidence: 97.5% Identity: 14% PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw Phyre2 PDB 1t16 chain A Region: 41 - 238 Aligned: 197 Modelled: 198 Confidence: 97.5% Identity: 15% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Outer membrane protein transport protein Phyre2 PDB 2k0l chain A Region: 42 - 162 Aligned: 118 Modelled: 121 Confidence: 97.4% Identity: 13% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Phyre2 PDB 3dwo chain X Region: 36 - 238 Aligned: 201 Modelled: 203 Confidence: 97.3% Identity: 12% PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue Phyre2 PDB 3aeh chain B Region: 33 - 237 Aligned: 153 Modelled: 159 Confidence: 97.0% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp Phyre2 PDB 3slj chain A Region: 33 - 237 Aligned: 190 Modelled: 205 Confidence: 96.8% Identity: 11% PDB header:protein transport Chain: A: PDB Molecule:serine protease espp; PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant Phyre2 PDB 1p4t chain A Region: 92 - 237 Aligned: 144 Modelled: 146 Confidence: 96.8% Identity: 13% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 3nb3 chain C Region: 21 - 162 Aligned: 121 Modelled: 125 Confidence: 96.4% Identity: 9% PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Phyre2 PDB 3qq2 chain C Region: 24 - 198 Aligned: 159 Modelled: 175 Confidence: 96.3% Identity: 9% PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Phyre2 PDB 1qjp chain A Region: 18 - 162 Aligned: 124 Modelled: 128 Confidence: 96.2% Identity: 9% Fold: Transmembrane beta-barrels Superfamily: OMPA-like Family: Outer membrane protein Phyre2 PDB 2jmm chain A Region: 90 - 237 Aligned: 135 Modelled: 148 Confidence: 96.0% Identity: 13% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Phyre2 PDB 2fgq chain X domain 1 Region: 51 - 237 Aligned: 170 Modelled: 182 Confidence: 95.9% Identity: 9% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Porin Phyre2 PDB 3brz chain A Region: 78 - 238 Aligned: 159 Modelled: 159 Confidence: 95.7% Identity: 11% PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx Phyre2 PDB 2x27 chain X Region: 43 - 162 Aligned: 120 Modelled: 120 Confidence: 95.5% Identity: 12% PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa Phyre2 PDB 1osm chain A Region: 63 - 237 Aligned: 170 Modelled: 175 Confidence: 94.8% Identity: 10% Fold: Transmembrane beta-barrels Superfamily: Porins Family: Porin Phyre2 PDB 2qom chain B Region: 43 - 200 Aligned: 151 Modelled: 158 Confidence: 93.7% Identity: 10% PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain. Phyre2 1 c2wjqA_ 2 c2iwvD_ 3 c3qraA_ 4 d1g90a_ 5 c2f1tB_ 6 d1t16a_ 7 c2k0lA_ 8 c3dwoX_ 9 c3aehB_ 10 c3sljA_ 11 d1p4ta_ 12 c3nb3C_ 13 c3qq2C_ 14 d1qjpa_ 15 c2jmmA_ 16 d2fgqx1 17 c3brzA_ 18 c2x27X_ 19 d1osma_ 20 c2qomB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2wjqA_ 100.0 100 PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. 2 c2iwvD_ 98.3 12 PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation 3 c3qraA_ 97.8 14 PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis 4 d1g90a_ 97.6 14 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 5 c2f1tB_ 97.5 14 PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw 6 d1t16a_ 97.5 15 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Outer membrane protein transport protein 7 c2k0lA_ 97.4 13 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. 8 c3dwoX_ 97.3 12 PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue 9 c3aehB_ 97.0 16 PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp 10 c3sljA_ 96.8 11 PDB header:protein transport Chain: A: PDB Molecule:serine protease espp; PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant 11 d1p4ta_ 96.8 13 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 12 c3nb3C_ 96.4 9 PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components 13 c3qq2C_ 96.3 9 PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka 14 d1qjpa_ 96.2 9 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 15 c2jmmA_ 96.0 13 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein 16 d2fgqx1 95.9 9 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 17 c3brzA_ 95.7 11 PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx 18 c2x27X_ 95.5 12 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa 19 d1osma_ 94.8 10 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 20 c2qomB_ 93.7 10 PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain. 21 d1qj8a_ not modelled 93.2 13 Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein 22 c2hdiA_ not modelled 93.1 13 PDB header:protein transport,antimicrobial protein Chain: A: PDB Molecule:colicin i receptor; PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia. 23 c3rbhC_ not modelled 92.5 16 PDB header:transport protein Chain: C: PDB Molecule:alginate production protein alge; PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa 24 d1a0tp_ not modelled 92.5 9 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 25 c3a2rX_ not modelled 92.4 10 PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis 26 d1phoa_ not modelled 92.2 8 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 27 d2vdfa1 not modelled 91.4 13 Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane adhesin/invasin OpcA 28 c3bryB_ not modelled 90.2 19 PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux 29 c3efmA_ not modelled 88.8 10 PDB header:membrane protein Chain: A: PDB Molecule:ferric alcaligin siderophore receptor; PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis 30 c2lhfA_ not modelled 88.3 10 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles 31 c3nsgA_ not modelled 85.7 10 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi 32 c2y0kA_ not modelled 84.8 14 PDB header:transport protein Chain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo 33 c3kvnA_ not modelled 82.9 15 PDB header:hydrolase Chain: A: PDB Molecule:esterase esta; PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa 34 d3prna_ not modelled 82.5 13 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 35 c2y0hA_ not modelled 81.0 15 PDB header:transport protein Chain: A: PDB Molecule:probable porin; PDBTitle: crystal structure of pseudomonas aeruginosa opdl 36 d1uynx_ not modelled 78.0 12 Fold:Transmembrane beta-barrels Superfamily:Autotransporter Family:Autotransporter 37 d1af6a_ not modelled 74.7 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 38 d2zfga1 not modelled 59.8 9 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin 39 c3jtyB_ not modelled 59.2 12 PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 40 d2mpra_ not modelled 56.8 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Maltoporin-like 41 c1fw3A_ not modelled 56.2 17 PDB header:hydrolase, membrane protein Chain: A: PDB Molecule:outer membrane phospholipase a; PDBTitle: outer membrane phospholipase a from escherichia coli 42 c1xkwA_ not modelled 55.9 11 PDB header:membrane protein Chain: A: PDB Molecule:fe(iii)-pyochelin receptor; PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa 43 d1fepa_ not modelled 49.9 13 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 44 d2gufa1 not modelled 49.0 15 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 45 c2odjA_ not modelled 47.6 14 PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa 46 d1by5a_ not modelled 44.9 14 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 47 c2qtkB_ not modelled 39.9 13 PDB header:membrane protein Chain: B: PDB Molecule:probable porin; PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa 48 c2o4vA_ not modelled 36.9 17 PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane 49 d1k28d2 not modelled 35.3 15 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 50 c2y0lA_ not modelled 31.0 11 PDB header:transport protein Chain: A: PDB Molecule:cis-aconitate porin opdh; PDBTitle: crystal structure of pseudomonas aeruginosa opdo 51 d2jnaa1 not modelled 24.9 20 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 52 c1pdjF_ not modelled 23.9 15 PDB header:structural protein Chain: F: PDB Molecule:baseplate structural protein gp27; PDBTitle: fitting of gp27 into cryoem reconstruction of bacteriophage2 t4 baseplate 53 c2ervA_ not modelled 20.9 14 PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein paer03002360; PDBTitle: crystal structure of the outer membrane enzyme pagl 54 c2eeyA_ not modelled 20.1 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis; PDBTitle: structure of gk0241 protein from geobacillus kaustophilus 55 c2k4tA_ not modelled 19.0 17 PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles 56 c3fhhA_ not modelled 18.5 8 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane heme receptor shua; PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae 57 c3cslB_ not modelled 17.4 17 PDB header:membrane protein/heme binding protein Chain: B: PDB Molecule:hasr protein; PDBTitle: structure of the serratia marcescens hemophore receptor hasr in2 complex with its hemophore hasa and heme 58 d2jdih2 not modelled 15.2 33 Fold:Epsilon subunit of F1F0-ATP synthase N-terminal domain Superfamily:Epsilon subunit of F1F0-ATP synthase N-terminal domain Family:Epsilon subunit of F1F0-ATP synthase N-terminal domain 59 c2iahA_ not modelled 14.0 11 PDB header:membrane protein Chain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine. 60 d1jeta_ not modelled 13.6 8 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 61 c3t66A_ not modelled 9.4 14 PDB header:transport protein Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein); PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans 62 d1uqwa_ not modelled 7.7 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 63 c3o9pA_ not modelled 7.3 11 PDB header:peptide binding protein/peptide Chain: A: PDB Molecule:periplasmic murein peptide-binding protein; PDBTitle: the structure of the escherichia coli murein tripeptide binding2 protein mppa 64 c3rqtA_ not modelled 6.9 16 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines 65 d1kmoa_ not modelled 6.9 12 Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel 66 c1xkhC_ not modelled 6.4 9 PDB header:membrane protein Chain: C: PDB Molecule:ferripyoverdine receptor; PDBTitle: pyoverdine outer membrane receptor fpva from pseudomonas aeruginosa2 pao1 bound to pyoverdine 67 d1zlqa1 not modelled 6.2 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 68 c1qd6C_ not modelled 6.2 16 PDB header:membrane protein Chain: C: PDB Molecule:protein (outer membrane phospholipase (ompla)); PDBTitle: outer membrane phospholipase a from escherichia coli 69 c3ftoA_ not modelled 6.2 5 PDB header:peptide binding protein Chain: A: PDB Molecule:oligopeptide-binding protein oppa; PDBTitle: crystal structure of oppa in a open conformation 70 d1ks9a2 not modelled 6.2 21 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 71 c2djmA_ not modelled 6.0 12 PDB header:sugar binding protein Chain: A: PDB Molecule:glucoamylase a; PDBTitle: solution structure of n-terminal starch-binding domain of2 glucoamylase from rhizopus oryzae 72 c3lznA_ not modelled 5.9 18 PDB header:transport protein Chain: A: PDB Molecule:p19 protein; PDBTitle: crystal structure analysis of the apo p19 protein from campylobacter2 jejuni at 1.59 a at ph 9 73 c1ztyA_ not modelled 5.9 3 PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein 74 d1xoca1 not modelled 5.8 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 75 c3ry3B_ not modelled 5.8 14 PDB header:transport protein Chain: B: PDB Molecule:putative solute-binding protein; PDBTitle: putative solute-binding protein from yersinia pestis. 76 d1wdds_ not modelled 5.7 19 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 77 d1ynha1 not modelled 5.6 29 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Succinylarginine dihydrolase-like 78 d1d5ra1 not modelled 5.3 11 Fold:C2 domain-like Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB) Family:PLC-like (P variant) 79 c2grxB_ not modelled 5.2 10 PDB header:metal transport Chain: B: PDB Molecule:ferrichrome-iron receptor; PDBTitle: crystal structure of tonb in complex with fhua, e. coli2 outer membrane receptor for ferrichrome 80 c3na3A_ not modelled 5.2 10 PDB header:protein binding Chain: A: PDB Molecule:dna mismatch repair protein mlh1; PDBTitle: mutl protein homolog 1 isoform 1 from homo sapiens 81 d1ej7s_ not modelled 5.1 19 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0