Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	Y	D	K	E	L	T	E	N	E	M	I	R	Q	K	I	L	Q	Q	L	L	E	W	I	E	C	N	L	E	H	P	I	S	I	E	D	I	A	Q	K	S	G	Y	S	R	R	N	I	Q	L	L	F	R	N	F	M	H	V	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	G	E	Y	I	R	K	R	R	L	C	R	A	A	I	L	V	R	L	T	A	K	S	M	L	D	I	A	L	S	L	H	F	D	S	Q	Q	S	F	S	R	E	F	K	K	L	F	G	C	S	P	R	E	Y	R	H	R	D	Y	W
Secondary structure
SS confidence
Disorder																					?	?																																			?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	L	A	N	I	F	P	S	F	L	I	R	Q	Q	Q	K	T	E	C	R	L	I	N	F	P	E	T	P	I	F	G	N	S	F	K	Y	D	I	E	V	S	N	K	S	P	D	E	E	V	K	L	R	R	H	H	L	A	R	C	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?		?	?		?	?	?	?	?																									?	?																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence		K	N	F	K	T	D	I	Y	F	V	S	T	F	E	P	S	T	K	S	V	D	L	L	T	V	E	T	F	A	G	T	V	C	E	Y	A	D	M	P	K	E	W	T	T	T	R	G	L	Y	D	P	T	H	V	I	W	T	Q	A
Secondary structure
SS confidence
Disorder																																																											?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1d5y chain D Region: 14 - 234 Aligned: 221 Modelled: 221 Confidence: 100.0% Identity: 29% PDB header:transcription/dna Chain: D: PDB Molecule:rob transcription factor; PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna Phyre2 PDB 3gbg chain A Region: 17 - 116 Aligned: 99 Modelled: 100 Confidence: 99.9% Identity: 19% PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Phyre2 PDB 1bl0 chain A Region: 17 - 129 Aligned: 113 Modelled: 113 Confidence: 99.9% Identity: 32% PDB header:transcription/dna Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein); PDBTitle: multiple antibiotic resistance protein (mara)/dna complex Phyre2 PDB 3oou chain A Region: 17 - 117 Aligned: 101 Modelled: 101 Confidence: 99.9% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2118 protein; PDBTitle: the structure of a protein with unkown function from listeria innocua Phyre2 PDB 3oio chain A Region: 16 - 117 Aligned: 102 Modelled: 102 Confidence: 99.9% Identity: 34% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain- PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum Phyre2 PDB 2k9s chain A Region: 16 - 117 Aligned: 102 Modelled: 102 Confidence: 99.9% Identity: 26% PDB header:transcription Chain: A: PDB Molecule:arabinose operon regulatory protein; PDBTitle: solution structure of dna binding domain of e. coli arac Phyre2 PDB 3mkl chain B Region: 17 - 117 Aligned: 100 Modelled: 100 Confidence: 99.9% Identity: 22% PDB header:transcription regulator Chain: B: PDB Molecule:hth-type transcriptional regulator gadx; PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12 Phyre2 PDB 3mn2 chain B Region: 16 - 117 Aligned: 102 Modelled: 102 Confidence: 99.9% Identity: 29% PDB header:transcription regulator Chain: B: PDB Molecule:probable arac family transcriptional regulator; PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009 Phyre2 PDB 3lsg chain D Region: 16 - 107 Aligned: 92 Modelled: 92 Confidence: 99.8% Identity: 20% PDB header:transcription regulator Chain: D: PDB Molecule:two-component response regulator yesn; PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586 Phyre2 PDB 1d5y chain A domain 2 Region: 68 - 131 Aligned: 64 Modelled: 64 Confidence: 99.5% Identity: 47% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: AraC type transcriptional activator Phyre2 PDB 1bl0 chain A domain 2 Region: 68 - 129 Aligned: 62 Modelled: 62 Confidence: 99.5% Identity: 24% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: AraC type transcriptional activator Phyre2 PDB 1d5y chain A domain 3 Region: 133 - 235 Aligned: 103 Modelled: 103 Confidence: 99.1% Identity: 16% Fold: Probable bacterial effector-binding domain Superfamily: Probable bacterial effector-binding domain Family: Rob transcription factor, C-terminal domain Phyre2 PDB 1d5y chain A domain 1 Region: 14 - 66 Aligned: 53 Modelled: 53 Confidence: 99.1% Identity: 36% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: AraC type transcriptional activator Phyre2 PDB 1bl0 chain A domain 1 Region: 15 - 66 Aligned: 52 Modelled: 52 Confidence: 99.1% Identity: 40% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: AraC type transcriptional activator Phyre2 PDB 1zgw chain A Region: 5 - 72 Aligned: 66 Modelled: 68 Confidence: 98.9% Identity: 17% PDB header:transcription regulator/dna Chain: A: PDB Molecule:ada polyprotein; PDBTitle: nmr structure of e. coli ada protein in complex with dna Phyre2 PDB 1jyh chain A Region: 137 - 235 Aligned: 95 Modelled: 99 Confidence: 98.6% Identity: 11% Fold: Probable bacterial effector-binding domain Superfamily: Probable bacterial effector-binding domain Family: Gyrase inhibitory protein GyrI (SbmC, YeeB) Phyre2 PDB 3gk6 chain A Region: 132 - 234 Aligned: 100 Modelled: 103 Confidence: 98.5% Identity: 10% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:integron cassette protein vch_cass2; PDBTitle: crystal structure from the mobile metagenome of vibrio cholerae.2 integron cassette protein vch_cass2. Phyre2 PDB 3lur chain B Region: 137 - 234 Aligned: 89 Modelled: 97 Confidence: 98.2% Identity: 10% PDB header:transcription activator Chain: B: PDB Molecule:putative bacterial transcription regulation protein; PDBTitle: crystal structure of putative bacterial transcription regulation2 protein (np_372959.1) from staphylococcus aureus mu50 at 1.81 a3 resolution Phyre2 PDB 2kcu chain A Region: 131 - 235 Aligned: 101 Modelled: 105 Confidence: 97.1% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ctr107; PDBTitle: nmr solution structure of an uncharacterized protein from2 chlorobium tepidum. northeast structural genomics target3 ctr107 Phyre2 PDB 3d6z chain A Region: 30 - 235 Aligned: 201 Modelled: 206 Confidence: 95.7% Identity: 9% PDB header:transcription regulator/dna Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator; PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine Phyre2 PDB 3eup chain A Region: 5 - 54 Aligned: 50 Modelled: 50 Confidence: 90.4% Identity: 20% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, tetr family; PDBTitle: the crystal structure of the transcriptional regulator, tetr family2 from cytophaga hutchinsonii Phyre2 1 c1d5yD_ 2 c3gbgA_ 3 c1bl0A_ 4 c3oouA_ 5 c3oioA_ 6 c2k9sA_ 7 c3mklB_ 8 c3mn2B_ 9 c3lsgD_ 10 d1d5ya2 11 d1bl0a2 12 d1d5ya3 13 d1d5ya1 14 d1bl0a1 15 c1zgwA_ 16 d1jyha_ 17 c3gk6A_ 18 c3lurB_ 19 c2kcuA_ 20 c3d6zA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 c3eupA_ 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499