PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3d6zA_

Fold library id	PDB Header	Molecule	Title
c3d6zA_	PDB header: transcription regulator/dna	Chain: A: PDB Molecule: multidrug-efflux transporter 1 regulator;	PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and2 rhodamine

Links to external resources
Added to library: Tue Mar 16 13:57:08 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K E S Y Y S I G E V S K L A N V S I K A L R Y Y D K I D L F K P A Y V D P D T S Y R Y Y T D S Q L I H L D L I K S L K Y I G T P L E E M K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T
T T S S
S
T T T
T G G G G T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A Q D L E M E E L F A F Y T E Q E R Q I R E K L D F L S A L E Q T I S L V K K R M K R Q M E Y P A L G E V F V L D E E E I R I I Q T E A E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
S
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I G P E N V L N A S Y S K L K K F I E S A D G F T N N S Y G A T F S F Q P Y T S I D E M T Y R H I F T P V L T N K Q I S S I T P D M E I T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
G G G G S S
S
S
G G G
S
S
S S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . .

Sequence I P K G R Y A C I A Y N F S P E H Y F L N L Q K L I K Y I A D R Q L T V V S D V Y E L I I P I H Y S P K K Q E E Y R V E M K I E I L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
B
S
S
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	E	S	Y	Y	S	I	G	E	V	S	K	L	A	N	V	S	I	K	A	L	R	Y	Y	D	K	I	D	L	F	K	P	A	Y	V	D	P	D	T	S	Y	R	Y	Y	T	D	S	Q	L	I	H	L	D	L	I	K	S	L	K	Y	I	G	T	P	L	E	E	M	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S												T												T	T	S	S			S				T	T	T							T	G	G	G	G											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	Q	D	L	E	M	E	E	L	F	A	F	Y	T	E	Q	E	R	Q	I	R	E	K	L	D	F	L	S	A	L	E	Q	T	I	S	L	V	K	K	R	M	K	R	Q	M	E	Y	P	A	L	G	E	V	F	V	L	D	E	E	E	I	R	I	I	Q	T	E	A	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S		S	S																																									S		S	S																		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	G	P	E	N	V	L	N	A	S	Y	S	K	L	K	K	F	I	E	S	A	D	G	F	T	N	N	S	Y	G	A	T	F	S	F	Q	P	Y	T	S	I	D	E	M	T	Y	R	H	I	F	T	P	V	L	T	N	K	Q	I	S	S	I	T	P	D	M	E	I	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T			G	G	G	G												S	S			S												S		G	G	G				S										S			S	S			T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Sequence	I	P	K	G	R	Y	A	C	I	A	Y	N	F	S	P	E	H	Y	F	L	N	L	Q	K	L	I	K	Y	I	A	D	R	Q	L	T	V	V	S	D	V	Y	E	L	I	I	P	I	H	Y	S	P	K	K	Q	E	E	Y	R	V	E	M	K	I	E	I	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																													T	T			B		S									S				S	S	S