Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	L	P	I	F	L	D	T	D	P	G	I	D	D	A	V	A	I	A	A	A	I	F	A	P	E	L	D	L	Q	L	M	T	T	V	A	G	N	V	S	V	E	K	T	T	R	N	A	L	Q	L	L	H	F	W	N	A	E	I
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	L	A	Q	G	A	A	V	P	L	V	R	A	P	R	D	A	A	S	V	H	G	E	S	G	M	A	G	Y	D	F	V	E	H	N	R	K	P	L	G	I	P	A	F	L	A	I	R	D	A	L	M	R	A	P	E	P	V	T	L
Secondary structure
SS confidence
Disorder																																					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	A	I	G	P	L	T	N	I	A	L	L	L	S	Q	C	P	E	C	K	P	Y	I	R	R	L	V	I	M	G	G	S	A	G	R	G	N	C	T	P	N	A	E	F	N	I	A	A	D	P	E	A	A	A	C	V	F	R	S	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	E	I	V	M	C	G	L	D	V	T	N	Q	A	I	L	T	P	D	Y	L	S	T	L	P	Q	L	N	R	T	G	K	M	L	H	A	L	F	S	H	Y	R	S	G	S	M	Q	S	G	L	R	M	H	D	L	C	A	I	A	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	V	R	P	D	L	F	T	L	K	P	C	F	V	A	V	E	T	Q	G	E	F	T	S	G	T	T	V	V	D	I	D	G	C	L	G	K	P	A	N	V	Q	V	A	L	D	L	D	V	K	G	F	Q	Q	W	V	A	E	V	L
Secondary structure
SS confidence
Disorder																																			?	?
Disorder confidence
		.	.	.	.
Sequence		A	L	A	S
Secondary structure
SS confidence
Disorder			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3b9x chain A Region: 2 - 301 Aligned: 300 Modelled: 300 Confidence: 100.0% Identity: 38% PDB header:hydrolase Chain: A: PDB Molecule:pyrimidine-specific ribonucleoside hydrolase rihb; PDBTitle: crystal structure of the e. coli pyrimidine nucleoside hydrolase yeik2 in complex with inosine Phyre2 PDB 1q8f chain A Region: 2 - 302 Aligned: 301 Modelled: 301 Confidence: 100.0% Identity: 38% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 2mas chain A Region: 2 - 301 Aligned: 300 Modelled: 300 Confidence: 100.0% Identity: 37% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 1yoe chain A Region: 2 - 301 Aligned: 295 Modelled: 300 Confidence: 100.0% Identity: 45% PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein ybek; PDBTitle: crystal structure of a the e. coli pyrimidine nucleoside hydrolase2 ybek with bound ribose Phyre2 PDB 1ezr chain A Region: 2 - 301 Aligned: 300 Modelled: 300 Confidence: 100.0% Identity: 37% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 3fz0 chain C Region: 1 - 304 Aligned: 303 Modelled: 304 Confidence: 100.0% Identity: 29% PDB header:hydrolase Chain: C: PDB Molecule:nucleoside hydrolase, putative; PDBTitle: inosine-guanosine nucleoside hydrolase (ig-nh) Phyre2 PDB 2c40 chain B Region: 1 - 301 Aligned: 289 Modelled: 299 Confidence: 100.0% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:inosine-uridine preferring nucleoside hydrolase family PDBTitle: crystal structure of inosine-uridine preferring nucleoside2 hydrolase from bacillus anthracis at 2.2a resolution Phyre2 PDB 1kic chain A Region: 2 - 302 Aligned: 292 Modelled: 301 Confidence: 100.0% Identity: 21% Fold: Nucleoside hydrolase Superfamily: Nucleoside hydrolase Family: Nucleoside hydrolase Phyre2 PDB 2yhg chain A Region: 2 - 151 Aligned: 138 Modelled: 139 Confidence: 99.5% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:cellulose-binding protein; PDBTitle: ab initio phasing of a nucleoside hydrolase-related hypothetical2 protein from saccharophagus degradans that is associated with3 carbohydrate metabolism Phyre2 PDB 1gpm chain A domain 1 Region: 3 - 57 Aligned: 55 Modelled: 55 Confidence: 77.3% Identity: 13% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Adenine nucleotide alpha hydrolases-like Family: N-type ATP pyrophosphatases Phyre2 PDB 2ocd chain A domain 1 Region: 9 - 78 Aligned: 68 Modelled: 70 Confidence: 49.0% Identity: 22% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 1o7j chain A Region: 9 - 79 Aligned: 66 Modelled: 71 Confidence: 48.3% Identity: 14% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 1nns chain A Region: 9 - 79 Aligned: 68 Modelled: 71 Confidence: 48.1% Identity: 16% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 1o5z chain A domain 2 Region: 10 - 67 Aligned: 55 Modelled: 55 Confidence: 47.8% Identity: 15% Fold: Ribokinase-like Superfamily: MurD-like peptide ligases, catalytic domain Family: Folylpolyglutamate synthetase Phyre2 PDB 4pga chain A Region: 9 - 79 Aligned: 66 Modelled: 71 Confidence: 47.0% Identity: 15% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 PDB 2dpl chain A Region: 2 - 57 Aligned: 56 Modelled: 56 Confidence: 42.3% Identity: 13% PDB header:ligase Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b; PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3 Phyre2 PDB 3r79 chain B Region: 2 - 60 Aligned: 59 Modelled: 59 Confidence: 35.7% Identity: 15% PDB header:structure genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharactertized protein from agrobacterium2 tumefaciens Phyre2 PDB 1pkl chain A domain 3 Region: 11 - 128 Aligned: 104 Modelled: 111 Confidence: 35.4% Identity: 14% Fold: Pyruvate kinase C-terminal domain-like Superfamily: PK C-terminal domain-like Family: Pyruvate kinase, C-terminal domain Phyre2 PDB 1e0t chain A domain 3 Region: 13 - 128 Aligned: 101 Modelled: 109 Confidence: 35.0% Identity: 14% Fold: Pyruvate kinase C-terminal domain-like Superfamily: PK C-terminal domain-like Family: Pyruvate kinase, C-terminal domain Phyre2 PDB 1agx chain A Region: 9 - 79 Aligned: 68 Modelled: 71 Confidence: 34.9% Identity: 12% Fold: Glutaminase/Asparaginase Superfamily: Glutaminase/Asparaginase Family: Glutaminase/Asparaginase Phyre2 1 c3b9xA_ 2 d1q8fa_ 3 d2masa_ 4 c1yoeA_ 5 d1ezra_ 6 c3fz0C_ 7 c2c40B_ 8 d1kica_ 9 c2yhgA_ 10 d1gpma1 11 d2ocda1 12 d1o7ja_ 13 d1nnsa_ 14 d1o5za2 15 d4pgaa_ 16 c2dplA_ 17 c3r79B_ 18 d1pkla3 19 d1e0ta3 20 d1agxa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3b9xA_ 100.0 38 PDB header:hydrolase Chain: A: PDB Molecule:pyrimidine-specific ribonucleoside hydrolase rihb; PDBTitle: crystal structure of the e. coli pyrimidine nucleoside hydrolase yeik2 in complex with inosine 2 d1q8fa_ 100.0 38 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 3 d2masa_ 100.0 37 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 4 c1yoeA_ 100.0 45 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein ybek; PDBTitle: crystal structure of a the e. coli pyrimidine nucleoside hydrolase2 ybek with bound ribose 5 d1ezra_ 100.0 37 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 6 c3fz0C_ 100.0 29 PDB header:hydrolase Chain: C: PDB Molecule:nucleoside hydrolase, putative; PDBTitle: inosine-guanosine nucleoside hydrolase (ig-nh) 7 c2c40B_ 100.0 24 PDB header:hydrolase Chain: B: PDB Molecule:inosine-uridine preferring nucleoside hydrolase family PDBTitle: crystal structure of inosine-uridine preferring nucleoside2 hydrolase from bacillus anthracis at 2.2a resolution 8 d1kica_ 100.0 21 Fold:Nucleoside hydrolase Superfamily:Nucleoside hydrolase Family:Nucleoside hydrolase 9 c2yhgA_ 99.5 21 PDB header:hydrolase Chain: A: PDB Molecule:cellulose-binding protein; PDBTitle: ab initio phasing of a nucleoside hydrolase-related hypothetical2 protein from saccharophagus degradans that is associated with3 carbohydrate metabolism 10 d1gpma1 77.3 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 11 d2ocda1 49.0 22 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 12 d1o7ja_ 48.3 14 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 13 d1nnsa_ 48.1 16 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 14 d1o5za2 47.8 15 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase 15 d4pgaa_ 47.0 15 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 16 c2dplA_ 42.3 13 PDB header:ligase Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b; PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3 17 c3r79B_ 35.7 15 PDB header:structure genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharactertized protein from agrobacterium2 tumefaciens 18 d1pkla3 35.4 14 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 19 d1e0ta3 35.0 14 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 20 d1agxa_ 34.9 12 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 21 c2z1dA_ not modelled 34.1 23 PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis 22 d3bula2 not modelled 32.4 18 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 23 c3uowB_ not modelled 30.8 15 PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum 24 d2b3ya2 not modelled 30.5 31 Fold:Aconitase iron-sulfur domain Superfamily:Aconitase iron-sulfur domain Family:Aconitase iron-sulfur domain 25 c2zyiB_ not modelled 29.5 16 PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium 26 d1ccwa_ not modelled 29.4 15 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 27 c3tqiB_ not modelled 29.0 13 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 28 c1wnfA_ not modelled 28.5 18 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii 29 c3p52B_ not modelled 25.1 18 PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: nh3-dependent nad synthetase from campylobacter jejuni subsp. jejuni2 nctc 11168 in complex with the nitrate ion 30 c1y80A_ not modelled 23.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 31 d2c5sa1 not modelled 23.6 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 32 c2vosA_ not modelled 23.5 19 PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase protein folc; PDBTitle: mycobacterium tuberculosis folylpolyglutamate synthase2 complexed with adp 33 d2gc6a2 not modelled 22.9 13 Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase 34 c3dlaD_ not modelled 21.5 23 PDB header:ligase Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don 35 c2d6fA_ not modelled 20.4 20 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 36 c1zq1B_ not modelled 19.3 23 PDB header:lyase Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi 37 d1wsaa_ not modelled 19.1 13 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 38 c3fiuD_ not modelled 18.6 24 PDB header:ligase Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nmn synthetase from francisella tularensis 39 d2nu7b1 not modelled 18.0 11 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 40 c1bmtB_ not modelled 16.3 18 PDB header:methyltransferase Chain: B: PDB Molecule:methionine synthase; PDBTitle: how a protein binds b12: a 3.o angstrom x-ray structure of2 the b12-binding domains of methionine synthase 41 c2nu9E_ not modelled 16.1 11 PDB header:ligase Chain: E: PDB Molecule:succinyl-coa synthetase beta chain; PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form 42 c1w8gA_ not modelled 16.0 17 PDB header:plp-binding protein Chain: A: PDB Molecule:hypothetical upf0001 protein yggs; PDBTitle: crystal structure of e. coli k-12 yggs 43 c2wltA_ not modelled 15.7 16 PDB header:hydrolase Chain: A: PDB Molecule:l-asparaginase; PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution 44 d1tcaa_ not modelled 15.1 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 45 c1w78A_ not modelled 14.9 15 PDB header:synthase Chain: A: PDB Molecule:folc bifunctional protein; PDBTitle: e.coli folc in complex with dhpp and adp 46 d1ru8a_ not modelled 14.6 18 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 47 c3si9B_ not modelled 14.2 10 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae 48 d2vk9a1 not modelled 13.9 9 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycosylating toxin catalytic domain-like 49 c3llxA_ not modelled 13.5 19 PDB header:isomerase Chain: A: PDB Molecule:predicted amino acid aldolase or racemase; PDBTitle: crystal structure of an ala racemase-like protein (il1761) from2 idiomarina loihiensis at 1.50 a resolution 50 c2hmaA_ not modelled 13.4 7 PDB header:transferase Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)- PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae 51 d1d9ea_ not modelled 13.4 9 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 52 c3nxkE_ not modelled 13.0 20 PDB header:hydrolase Chain: E: PDB Molecule:cytoplasmic l-asparaginase; PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni 53 d3cx5a2 not modelled 12.7 4 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like 54 c1gpmD_ not modelled 12.4 13 PDB header:transferase (glutamine amidotransferase) Chain: D: PDB Molecule:gmp synthetase; PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate 55 d3clsc1 not modelled 12.2 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 56 d1efvb_ not modelled 11.5 21 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 57 c2derA_ not modelled 11.3 8 PDB header:transferase/rna Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma; PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state 58 c1xtyD_ not modelled 11.3 45 PDB header:hydrolase Chain: D: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna2 hydrolase 59 c3cseA_ not modelled 11.2 24 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrofolate reductase; PDBTitle: candida glabrata dihydrofolate reductase complexed with2 nadph and 2,4-diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-3 ynyl)-6-ethylpyrimidine (ucp120b) 60 c3bl5E_ not modelled 11.0 9 PDB header:hydrolase Chain: E: PDB Molecule:queuosine biosynthesis protein quec; PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis 61 c3sz8D_ not modelled 11.0 10 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 62 d1lw7a1 not modelled 10.7 8 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 63 d1vbka1 not modelled 10.5 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ThiI-like 64 c2d3kA_ not modelled 10.3 55 PDB header:hydrolase Chain: A: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3 65 c2yxgD_ not modelled 10.2 11 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 66 d1liua3 not modelled 10.2 17 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 67 d1j20a1 not modelled 10.1 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 68 d1kqpa_ not modelled 10.1 20 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 69 d2bcea_ not modelled 10.0 20 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 70 c2zv3E_ not modelled 9.7 64 PDB header:hydrolase Chain: E: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of project mj0051 from methanocaldococcus2 jannaschii dsm 2661 71 d1q7sa_ not modelled 9.5 45 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 72 d1bd0a2 not modelled 9.5 26 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 73 d1ik6a2 not modelled 9.3 33 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 74 d3erja1 not modelled 9.0 55 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 75 d2g50a3 not modelled 8.9 14 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:Pyruvate kinase, C-terminal domain 76 d1xnga1 not modelled 8.8 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 77 c1o5zA_ not modelled 8.7 15 PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase/dihydrofolate synthase; PDBTitle: crystal structure of folylpolyglutamate synthase (tm0166) from2 thermotoga maritima at 2.10 a resolution 78 d1hioa_ not modelled 8.7 14 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 79 d5mdha1 not modelled 8.6 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 80 d2bvla1 not modelled 8.4 17 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Glycosylating toxin catalytic domain-like 81 c1eucB_ not modelled 8.4 15 PDB header:ligase Chain: B: PDB Molecule:succinyl-coa synthetase, beta chain; PDBTitle: crystal structure of dephosphorylated pig heart, gtp-2 specific succinyl-coa synthetase 82 c3ezxA_ not modelled 8.4 12 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 83 d1rlka_ not modelled 8.0 36 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 84 d2d6fa2 not modelled 8.0 20 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 85 d1t1ra2 not modelled 8.0 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 86 c2dy3B_ not modelled 7.8 20 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum 87 c3rg9A_ not modelled 7.8 26 PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate synthase; PDBTitle: trypanosoma brucei dihydrofolate reductase (tbdhfr) in complex with2 wr99210 88 c2gc6A_ not modelled 7.6 13 PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase; PDBTitle: s73a mutant of l. casei fpgs 89 d1o94c_ not modelled 7.6 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits 90 d1k4ya_ not modelled 7.4 20 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 91 c3jz0B_ not modelled 7.3 18 PDB header:transferase/antibiotic Chain: B: PDB Molecule:lincosamide nucleotidyltransferase; PDBTitle: linb complexed with clindamycin and ampcpp 92 c3kw3B_ not modelled 7.3 10 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from bartonella henselae with2 covalently bound pyridoxal phosphate 93 d1qs0b2 not modelled 7.3 21 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 94 d1u35c1 not modelled 7.0 18 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 95 d7reqa2 not modelled 7.0 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 96 d2ozlb2 not modelled 6.8 21 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 97 d2pg3a1 not modelled 6.7 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 98 d1qe3a_ not modelled 6.6 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Acetylcholinesterase-like 99 c1vl2C_ not modelled 6.6 19 PDB header:ligase Chain: C: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of argininosuccinate synthase (tm1780) from2 thermotoga maritima at 1.65 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0