Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	C	I	G	V	P	G	Q	I	R	T	I	D	G	N	Q	A	K	V	D	V	C	G	I	Q	R	D	V	D	L	T	L	V	G	S	C	D	E	N	G	Q	P	R	V	G	Q	W	V	L	V	H	V	G	F	A	M	S	V	I	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?																														?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Sequence		E	A	E	A	R	D	T	L	D	A	L	Q	N	M	F	D	V	E	P	D	V	G	A	L	L	Y	G	E	E	K
Secondary structure
SS confidence
Disorder																		?	?	?	?	?					?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ot2 chain A domain 1 Region: 1 - 90 Aligned: 90 Modelled: 90 Confidence: 100.0% Identity: 100% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 3d3r chain A Region: 1 - 79 Aligned: 73 Modelled: 78 Confidence: 100.0% Identity: 29% PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 Phyre2 PDB 2z1c chain A domain 1 Region: 2 - 78 Aligned: 71 Modelled: 77 Confidence: 99.9% Identity: 35% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 3d3r chain A domain 1 Region: 2 - 79 Aligned: 72 Modelled: 78 Confidence: 99.9% Identity: 29% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 2rcn chain A Region: 6 - 53 Aligned: 43 Modelled: 48 Confidence: 79.8% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. Phyre2 PDB 4a2i chain V Region: 6 - 53 Aligned: 43 Modelled: 48 Confidence: 78.7% Identity: 19% PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor Phyre2 PDB 2yv5 chain A Region: 5 - 53 Aligned: 49 Modelled: 49 Confidence: 70.5% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus Phyre2 PDB 2hc8 chain A Region: 14 - 56 Aligned: 34 Modelled: 43 Confidence: 48.3% Identity: 29% PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain Phyre2 PDB 1rl2 chain A domain 2 Region: 4 - 48 Aligned: 38 Modelled: 38 Confidence: 46.6% Identity: 29% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1xni chain I Region: 6 - 49 Aligned: 41 Modelled: 44 Confidence: 46.1% Identity: 20% PDB header:cell cycle Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1; PDBTitle: tandem tudor domain of 53bp1 Phyre2 PDB 1g0d chain A Region: 2 - 10 Aligned: 9 Modelled: 9 Confidence: 44.2% Identity: 33% PDB header:transferase Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: crystal structure of red sea bream transglutaminase Phyre2 PDB 1kv3 chain F Region: 2 - 10 Aligned: 9 Modelled: 9 Confidence: 43.6% Identity: 33% PDB header:transferase Chain: F: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: human tissue transglutaminase in gdp bound form Phyre2 PDB 1l9m chain B Region: 2 - 10 Aligned: 9 Modelled: 9 Confidence: 43.2% Identity: 22% PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation Phyre2 PDB 1vfs chain A domain 1 Region: 15 - 67 Aligned: 53 Modelled: 53 Confidence: 42.7% Identity: 11% Fold: Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily: Alanine racemase C-terminal domain-like Family: Alanine racemase Phyre2 PDB 1f13 chain A Region: 2 - 10 Aligned: 9 Modelled: 9 Confidence: 40.8% Identity: 44% PDB header:coagulation factor Chain: A: PDB Molecule:cellular coagulation factor xiii zymogen; PDBTitle: recombinant human cellular coagulation factor xiii Phyre2 PDB 1u0l chain B Region: 3 - 50 Aligned: 48 Modelled: 48 Confidence: 40.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima Phyre2 PDB 2rhs chain B Region: 7 - 50 Aligned: 37 Modelled: 44 Confidence: 39.0% Identity: 24% PDB header:ligase Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain; PDBTitle: phers from staphylococcus haemolyticus- rational protein2 engineering and inhibitor studies Phyre2 PDB 1njj chain B domain 1 Region: 29 - 51 Aligned: 23 Modelled: 23 Confidence: 37.0% Identity: 22% Fold: Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily: Alanine racemase C-terminal domain-like Family: Eukaryotic ODC-like Phyre2 PDB 1g0d chain A domain 4 Region: 2 - 11 Aligned: 10 Modelled: 10 Confidence: 37.0% Identity: 40% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Transglutaminase core Phyre2 PDB 2q3z chain A domain 4 Region: 2 - 11 Aligned: 10 Modelled: 10 Confidence: 34.7% Identity: 40% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Transglutaminase core Phyre2 1 d2ot2a1 2 c3d3rA_ 3 d2z1ca1 4 d3d3ra1 5 c2rcnA_ 6 c4a2iV_ 7 c2yv5A_ 8 c2hc8A_ 9 d1rl2a2 10 c1xniI_ 11 c1g0dA_ 12 c1kv3F_ 13 c1l9mB_ 14 d1vfsa1 15 c1f13A_ 16 c1u0lB_ 17 c2rhsB_ 18 d1njjb1 19 d1g0da4 20 d2q3za4 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2ot2a1 100.0 100 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 2 c3d3rA_ 100.0 29 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 3 d2z1ca1 99.9 35 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 4 d3d3ra1 99.9 29 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 5 c2rcnA_ 79.8 19 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 6 c4a2iV_ 78.7 19 PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor 7 c2yv5A_ 70.5 12 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 8 c2hc8A_ 48.3 29 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 9 d1rl2a2 46.6 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 10 c1xniI_ 46.1 20 PDB header:cell cycle Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1; PDBTitle: tandem tudor domain of 53bp1 11 c1g0dA_ 44.2 33 PDB header:transferase Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: crystal structure of red sea bream transglutaminase 12 c1kv3F_ 43.6 33 PDB header:transferase Chain: F: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: human tissue transglutaminase in gdp bound form 13 c1l9mB_ 43.2 22 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 14 d1vfsa1 42.7 11 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Alanine racemase 15 c1f13A_ 40.8 44 PDB header:coagulation factor Chain: A: PDB Molecule:cellular coagulation factor xiii zymogen; PDBTitle: recombinant human cellular coagulation factor xiii 16 c1u0lB_ 40.0 19 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 17 c2rhsB_ 39.0 24 PDB header:ligase Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain; PDBTitle: phers from staphylococcus haemolyticus- rational protein2 engineering and inhibitor studies 18 d1njjb1 37.0 22 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 19 d1g0da4 37.0 40 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 20 d2q3za4 34.7 40 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 21 d1u0la1 not modelled 34.4 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 22 c2e8gB_ not modelled 34.2 19 PDB header:rna binding protein Chain: B: PDB Molecule:hypothetical protein ph0536; PDBTitle: the structure of protein from p. horikoshii at 1.7 angstrom2 resolution 23 d1ex0a4 not modelled 33.8 50 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 24 d1d7ka1 not modelled 32.1 22 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 25 d1vjja4 not modelled 31.9 30 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 26 c2opkC_ not modelled 31.5 21 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 27 c3mxnB_ not modelled 30.6 18 PDB header:replication Chain: B: PDB Molecule:recq-mediated genome instability protein 2; PDBTitle: crystal structure of the rmi core complex 28 c2fhdA_ not modelled 30.1 17 PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains 29 d2toda1 not modelled 30.0 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 30 d2nn6h1 not modelled 30.0 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 31 c2dbiA_ not modelled 29.4 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ybiu; PDBTitle: crystal structure of a hypothetical protein jw0805 from2 escherichia coli 32 c2nvaH_ not modelled 28.4 16 PDB header:lyase Chain: H: PDB Molecule:arginine decarboxylase, a207r protein; PDBTitle: the x-ray crystal structure of the paramecium bursaria2 chlorella virus arginine decarboxylase bound to agmatine 33 d2csga1 not modelled 27.5 26 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:YbiU-like 34 c3m9bK_ not modelled 26.7 15 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 35 c1njjC_ not modelled 26.1 33 PDB header:lyase Chain: C: PDB Molecule:ornithine decarboxylase; PDBTitle: crystal structure determination of t. brucei ornithine2 decarboxylase bound to d-ornithine and to g418 36 d1tt2a_ not modelled 25.5 27 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 37 d2soba_ not modelled 25.4 25 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 38 d1f3ta1 not modelled 24.8 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 39 c2oqkA_ not modelled 24.6 28 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 40 c3fp9E_ not modelled 24.4 13 PDB header:hydrolase Chain: E: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis 41 d1hh2p1 not modelled 24.1 11 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 42 c2pljA_ not modelled 23.9 13 PDB header:lyase Chain: A: PDB Molecule:lysine/ornithine decarboxylase; PDBTitle: crystal structure of lysine/ornithine decarboxylase complexed with2 putrescine from vibrio vulnificus 43 c1ltlE_ not modelled 23.0 15 PDB header:replication Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54); PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum 44 d1pqwa_ not modelled 22.6 31 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 45 d2gy9q1 not modelled 22.6 27 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 46 c3bu2B_ not modelled 22.6 26 PDB header:rna binding protein Chain: B: PDB Molecule:putative trna-binding protein; PDBTitle: crystal structure of a trna-binding protein from2 staphylococcus saprophyticus subsp. saprophyticus.3 northeast structural genomics consortium target syr77 47 c3j09A_ not modelled 22.3 29 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 48 d2fzwa2 not modelled 22.1 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 49 c2qghA_ not modelled 22.1 8 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine 50 c2vl6C_ not modelled 21.6 18 PDB header:dna binding protein Chain: C: PDB Molecule:minichromosome maintenance protein mcm; PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain 51 d7odca1 not modelled 20.4 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 52 d1v3va2 not modelled 20.2 31 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 53 d1ltla_ not modelled 19.8 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA replication initiator (cdc21/cdc54) N-terminal domain 54 d1knwa1 not modelled 19.6 17 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 55 c2p1gA_ not modelled 18.8 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis 56 c2p3eA_ not modelled 18.6 17 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus 57 d1vqoa2 not modelled 18.0 23 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 58 d1e3ia2 not modelled 17.9 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 59 d2rcfa1 not modelled 17.6 31 Fold:OB-fold Superfamily:EutN/CcmL-like Family:EutN/CcmL-like 60 c3bbnQ_ not modelled 17.5 27 PDB header:ribosome Chain: Q: PDB Molecule:ribosomal protein s17; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 61 c1knwA_ not modelled 17.4 17 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase 62 d1yb5a2 not modelled 17.4 38 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 63 d1p0fa2 not modelled 17.4 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 64 c1oy5B_ not modelled 17.0 18 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus 65 c2a7yA_ not modelled 16.9 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359; PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis 66 d2a7ya1 not modelled 16.9 30 Fold:SH3-like barrel Superfamily:Cell growth inhibitor/plasmid maintenance toxic component Family:Rv2302-like 67 d1oy5a_ not modelled 16.9 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 68 d1fr3a_ not modelled 16.8 11 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 69 c2yxxA_ not modelled 16.8 17 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) 70 d1twia1 not modelled 16.8 17 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 71 d1d1ta2 not modelled 16.8 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 72 d1t9ha1 not modelled 16.6 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 73 d1rkna_ not modelled 16.0 25 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 74 d1qora2 not modelled 15.9 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 75 d2q07a1 not modelled 15.8 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 76 d2uubq1 not modelled 15.5 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 77 c3rfuC_ not modelled 15.4 27 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 78 d1gu7a2 not modelled 15.4 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 79 c1s1hQ_ not modelled 15.3 23 PDB header:ribosome Chain: Q: PDB Molecule:40s ribosomal protein s11; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 80 c3knuD_ not modelled 15.1 27 PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum 81 d1f8fa2 not modelled 15.0 0 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 82 c3pcoD_ not modelled 14.9 27 PDB header:ligase Chain: D: PDB Molecule:phenylalanyl-trna synthetase, beta chain; PDBTitle: crystal structure of e. coli phenylalanine-trna synthetase complexed2 with phenylalanine and amp 83 d2qamc2 not modelled 14.6 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 84 d1p9pa_ not modelled 14.4 27 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 85 c3ky7A_ not modelled 14.2 27 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 86 d1pl8a2 not modelled 14.1 31 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 87 c1vftA_ not modelled 14.0 9 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae 88 c3iefA_ not modelled 13.9 18 PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. 89 d1uala_ not modelled 13.8 27 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 90 d2jhfa2 not modelled 13.5 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 91 c1w4sA_ not modelled 13.5 50 PDB header:nuclear protein Chain: A: PDB Molecule:polybromo 1 protein; PDBTitle: crystal structure of the proximal bah domain of polybromo 92 c2zkqq_ not modelled 13.5 18 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 93 d1cdoa2 not modelled 13.3 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 94 c3mt1B_ not modelled 13.2 15 PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti 95 c3n29A_ not modelled 12.9 8 PDB header:lyase Chain: A: PDB Molecule:carboxynorspermidine decarboxylase; PDBTitle: crystal structure of carboxynorspermidine decarboxylase complexed with2 norspermidine from campylobacter jejuni 96 d2qw7a1 not modelled 12.7 33 Fold:OB-fold Superfamily:EutN/CcmL-like Family:EutN/CcmL-like 97 c3smaD_ not modelled 12.7 26 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 98 c2dgyA_ not modelled 12.7 16 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 99 d1rcqa1 not modelled 12.7 18 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Alanine racemase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0