PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3knuD_

Fold library id	PDB Header	Molecule	Title
c3knuD_	PDB header: transferase	Chain: D: PDB Molecule: trna (guanine-n(1)-)-methyltransferase;	PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase2 from anaplasma phagocytophilum

Links to external resources
Added to library: Sun Aug 29 01:15:11 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M I F N V L T I F P Q M F P G P L G V S N L G S A L K K G L W T L N V F D I R A F A N N H N T V D D T P Y G G G P G M L L R A D V L G R C I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G
S G G G G S T T S S G G G G
S
T T S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D E V L S L H P N T K L M F T S P R G V S F T Q D I A R Q T M N F D N I T L L C G R F E G I D E R V V D F Y K L Q E V S I G D Y V L S G G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
S
T T
B
T
S S S S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . .

Sequence L A A M V I I D T C V R M V P G V I L E Y P Q Y T R P A S W K G M E V P E V L L T G N H G E I E K W R R N A S L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T T
S
S T T
G G G G T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	I	F	N	V	L	T	I	F	P	Q	M	F	P	G	P	L	G	V	S	N	L	G	S	A	L	K	K	G	L	W	T	L	N	V	F	D	I	R	A	F	A	N	N	H	N	T	V	D	D	T	P	Y	G	G	G	P	G	M	L	L	R	A	D	V	L	G	R	C	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		G	G	G		S	G	G	G	G	S									T	T	S	S							G	G	G	G							S					T	T	S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	E	V	L	S	L	H	P	N	T	K	L	M	F	T	S	P	R	G	V	S	F	T	Q	D	I	A	R	Q	T	M	N	F	D	N	I	T	L	L	C	G	R	F	E	G	I	D	E	R	V	V	D	F	Y	K	L	Q	E	V	S	I	G	D	Y	V	L	S	G	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T																							T		S									T	T		B									T						S	S	S	S			S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Sequence	L	A	A	M	V	I	I	D	T	C	V	R	M	V	P	G	V	I	L	E	Y	P	Q	Y	T	R	P	A	S	W	K	G	M	E	V	P	E	V	L	L	T	G	N	H	G	E	I	E	K	W	R	R	N	A	S	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	S	T	T	T									S		S			T	T					G	G	G	G	T	T													T	T