Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c2p3eA_

Fold library idPDB HeaderMoleculeTitle
c2p3eA_PDB header: lyaseChain: A: PDB Molecule: diaminopimelate decarboxylase;PDBTitle: crystal structure of aq1208 from aquifex aeolicus


Added to library: Tue Mar 16 13:35:30 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ELLKEYNPYLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFPDALICYAVKANFNPH
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)

TTTTTT
SSSTTSGGG


 .........80.........90.........100.........110.........120.........130.........140
Sequence LVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEI
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TT
SSTT

GGG
SS


TT
S

 .........150.........160.........170.........180.........190.........200.........210
Sequence AGKLGKKARIAIRVNPSKFGVDIREAQKEYEYASKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYE
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) T




S
GGGT
TT



SSBSS
T
 .........220.........230.........240.........250.........260.........270.........280
Sequence SLTQKGFDIKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLLVKAKIILEPGRSIMGNAGILITQVQFLK
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TT







B



STT




TTT


S

SGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence DKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETKEVVADIVGPICETGDFLALDREIEEVQRGEYLAVL
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) TTS

TTT






SB




SSSSTT





TT

 .........360.........370.........380.........390........
Sequence SAGAYGFAMSSHYNMRPRAAEVLVENGSVKLIRKRENYDYIVEPSLDI
Predicted secondary structure






















SS confidence















































Known secondary structure (DSSP) S
TTTTGGG


GGG



TT



GGGS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D