Secondary structure and disorder prediction

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Sequence		M	K	T	I	F	T	V	G	A	V	V	L	A	T	C	L	L	S	G	C	V	N	E	Q	K	V	N	Q	L	A	S	N	V	Q	T	L	N	A	K	I	A	R	L	E	Q	D	M	K	A	L	R	P	Q	I	Y	A	A	K	S	E
Secondary structure
SS confidence
Disorder		?	?	?																?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Sequence		A	N	R	A	N	T	R	L	D	A	Q	D	Y	F	D	C	L	R	C	L	R	M	Y	A	E
Secondary structure
SS confidence
Disorder							?	?	?	?															?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jcc chain C Region: 21 - 71 Aligned: 51 Modelled: 51 Confidence: 99.9% Identity: 43% PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations Phyre2 PDB 1t8z chain A Region: 24 - 71 Aligned: 48 Modelled: 48 Confidence: 99.6% Identity: 35% PDB header:membrane protein Chain: A: PDB Molecule:major outer membrane lipoprotein; PDBTitle: atomic structure of a novel tryptophan-zipper pentamer Phyre2 PDB 2gr7 chain A domain 1 Region: 29 - 56 Aligned: 28 Modelled: 28 Confidence: 79.5% Identity: 21% Fold: Pili subunits Superfamily: Pili subunits Family: YadA C-terminal domain-like Phyre2 PDB 2gr7 chain C Region: 29 - 56 Aligned: 28 Modelled: 28 Confidence: 79.5% Identity: 21% PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 Phyre2 PDB 2v7i chain A Region: 45 - 78 Aligned: 34 Modelled: 34 Confidence: 77.1% Identity: 21% PDB header:biosynthetic protein Chain: A: PDB Molecule:prnb; PDBTitle: prnb native Phyre2 PDB 1zee chain A domain 1 Region: 48 - 78 Aligned: 31 Modelled: 31 Confidence: 76.4% Identity: 19% Fold: Indolic compounds 2,3-dioxygenase-like Superfamily: Indolic compounds 2,3-dioxygenase-like Family: Indoleamine 2,3-dioxygenase-like Phyre2 PDB 2diu chain A Region: 58 - 76 Aligned: 19 Modelled: 19 Confidence: 66.3% Identity: 32% PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0430 protein; PDBTitle: solution structure of the rrm domain of kiaa0430 protein Phyre2 PDB 3sjb chain C Region: 35 - 59 Aligned: 25 Modelled: 25 Confidence: 61.1% Identity: 20% PDB header:hydrolase/transport protein Chain: C: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain Phyre2 PDB 1ci6 chain B Region: 24 - 52 Aligned: 29 Modelled: 29 Confidence: 55.7% Identity: 28% PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer Phyre2 PDB 1by0 chain A Region: 24 - 46 Aligned: 23 Modelled: 23 Confidence: 45.7% Identity: 35% PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen Phyre2 PDB 3sja chain G Region: 35 - 56 Aligned: 22 Modelled: 22 Confidence: 45.6% Identity: 23% PDB header:hydrolase/transport protein Chain: G: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain Phyre2 PDB 1fos chain F Region: 24 - 60 Aligned: 37 Modelled: 37 Confidence: 43.3% Identity: 27% PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes Phyre2 PDB 1j1d chain F Region: 24 - 55 Aligned: 32 Modelled: 32 Confidence: 42.2% Identity: 16% PDB header:contractile protein Chain: F: PDB Molecule:troponin i; PDBTitle: crystal structure of the 46kda domain of human cardiac2 troponin in the ca2+ saturated form Phyre2 PDB 2poh chain A Region: 23 - 70 Aligned: 48 Modelled: 48 Confidence: 38.0% Identity: 17% PDB header:viral protein Chain: A: PDB Molecule:head completion protein; PDBTitle: structure of phage p22 tail needle gp26 Phyre2 PDB 3na7 chain A Region: 21 - 70 Aligned: 49 Modelled: 50 Confidence: 35.5% Identity: 18% PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 Phyre2 PDB 2gl2 chain B Region: 29 - 70 Aligned: 42 Modelled: 42 Confidence: 35.1% Identity: 21% PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada Phyre2 PDB 2akf chain B Region: 26 - 56 Aligned: 31 Modelled: 31 Confidence: 35.0% Identity: 29% PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 Phyre2 PDB 2akf chain A Region: 26 - 56 Aligned: 31 Modelled: 31 Confidence: 35.0% Identity: 29% PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 Phyre2 PDB 2akf chain C Region: 26 - 56 Aligned: 31 Modelled: 31 Confidence: 35.0% Identity: 29% PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 Phyre2 PDB 1avy chain A Region: 23 - 60 Aligned: 38 Modelled: 38 Confidence: 34.4% Identity: 8% PDB header:coiled coil Chain: A: PDB Molecule:fibritin; PDBTitle: fibritin deletion mutant m (bacteriophage t4) Phyre2 1 c1jccC_ 2 c1t8zA_ 3 d2gr7a1 4 c2gr7C_ 5 c2v7iA_ 6 d1zeea1 7 c2diuA_ 8 c3sjbC_ 9 c1ci6B_ 10 c1by0A_ 11 c3sjaG_ 12 c1fosF_ 13 c1j1dF_ 14 c2pohA_ 15 c3na7A_ 16 c2gl2B_ 17 c2akfB_ 18 c2akfA_ 19 c2akfC_ 20 c1avyA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1jccC_ 99.9 43 PDB header:membrane protein Chain: C: PDB Molecule:major outer membrane lipoprotein; PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations 2 c1t8zA_ 99.6 35 PDB header:membrane protein Chain: A: PDB Molecule:major outer membrane lipoprotein; PDBTitle: atomic structure of a novel tryptophan-zipper pentamer 3 d2gr7a1 79.5 21 Fold:Pili subunits Superfamily:Pili subunits Family:YadA C-terminal domain-like 4 c2gr7C_ 79.5 21 PDB header:membrane protein Chain: C: PDB Molecule:adhesin; PDBTitle: hia 992-1098 5 c2v7iA_ 77.1 21 PDB header:biosynthetic protein Chain: A: PDB Molecule:prnb; PDBTitle: prnb native 6 d1zeea1 76.4 19 Fold:Indolic compounds 2,3-dioxygenase-like Superfamily:Indolic compounds 2,3-dioxygenase-like Family:Indoleamine 2,3-dioxygenase-like 7 c2diuA_ 66.3 32 PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0430 protein; PDBTitle: solution structure of the rrm domain of kiaa0430 protein 8 c3sjbC_ 61.1 20 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain 9 c1ci6B_ 55.7 28 PDB header:transcription Chain: B: PDB Molecule:transcription factor c/ebp beta; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 10 c1by0A_ 45.7 35 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen 11 c3sjaG_ 45.6 23 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:golgi to er traffic protein 1; PDBTitle: crystal structure of s. cerevisiae get3 in the open state in complex2 with get1 cytosolic domain 12 c1fosF_ 43.3 27 PDB header:transcription/dna Chain: F: PDB Molecule:c-jun proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 13 c1j1dF_ 42.2 16 PDB header:contractile protein Chain: F: PDB Molecule:troponin i; PDBTitle: crystal structure of the 46kda domain of human cardiac2 troponin in the ca2+ saturated form 14 c2pohA_ 38.0 17 PDB header:viral protein Chain: A: PDB Molecule:head completion protein; PDBTitle: structure of phage p22 tail needle gp26 15 c3na7A_ 35.5 18 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 16 c2gl2B_ 35.1 21 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 17 c2akfB_ 35.0 29 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 18 c2akfA_ 35.0 29 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 19 c2akfC_ 35.0 29 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 20 c1avyA_ 34.4 8 PDB header:coiled coil Chain: A: PDB Molecule:fibritin; PDBTitle: fibritin deletion mutant m (bacteriophage t4) 21 c3m9bK_ not modelled 33.6 26 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 22 c2ykqC_ not modelled 33.2 17 PDB header:rna-binding protein Chain: C: PDB Molecule:line-1 orf1p; PDBTitle: structure of the human line-1 orf1p trimer 23 c3ipdB_ not modelled 33.1 11 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 24 c2eqbC_ not modelled 32.9 14 PDB header:endocytosis/exocytosis Chain: C: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: crystal structure of the rab gtpase sec4p, the sec2p gef2 domain, and phosphate complex 25 c3u59C_ not modelled 32.4 11 PDB header:contractile protein Chain: C: PDB Molecule:tropomyosin beta chain; PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta 26 c3emoA_ not modelled 32.3 19 PDB header:membrane protein/cell adhesion Chain: A: PDB Molecule:hia (adhesin); PDBTitle: crystal structure of transmembrane hia 973-1098 27 c1ytzI_ not modelled 32.1 9 PDB header:contractile protein Chain: I: PDB Molecule:troponin i; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 activated state 28 c2hpcF_ not modelled 28.7 14 PDB header:blood clotting Chain: F: PDB Molecule:fibrinogen, gamma polypeptide; PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide. 29 c2w83C_ not modelled 28.3 21 PDB header:protein transport Chain: C: PDB Molecule:c-jun-amino-terminal kinase-interacting protein PDBTitle: crystal structure of the arf6 gtpase in complex with a2 specific effector, jip4 30 c1j1eC_ not modelled 27.6 16 PDB header:contractile protein Chain: C: PDB Molecule:troponin i; PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form 31 c1deqO_ not modelled 27.3 8 PDB header: PDB COMPND: 32 c2qa7B_ not modelled 26.7 28 PDB header:actin binding Chain: B: PDB Molecule:huntingtin-interacting protein 1; PDBTitle: crystal structure of huntingtin-interacting protein 12 (hip1) coiled-coil domain with a basic surface suitable3 for hip-protein interactor (hippi) 33 c1coiA_ not modelled 26.6 50 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 34 c1bb1B_ not modelled 26.3 36 PDB header:de novo protein design Chain: B: PDB Molecule:designed, thermostable heterotrimeric coiled PDBTitle: crystal structure of a designed, thermostable2 heterotrimeric coiled coil 35 c1yv0I_ not modelled 22.6 9 PDB header:contractile protein Chain: I: PDB Molecule:troponin i, fast skeletal muscle; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 free state 36 c1gd2G_ not modelled 21.6 19 PDB header:transcription/dna Chain: G: PDB Molecule:transcription factor pap1; PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna 37 c1ei3E_ not modelled 20.7 8 PDB header: PDB COMPND: 38 c2x7aB_ not modelled 19.4 23 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 39 c2d3eD_ not modelled 19.3 19 PDB header:contractile protein Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin 40 c2wt7B_ not modelled 19.2 19 PDB header:transcription Chain: B: PDB Molecule:transcription factor mafb; PDBTitle: crystal structure of the bzip heterodimeric complex2 mafb:cfos bound to dna 41 c3p8cF_ not modelled 18.4 23 PDB header:protein binding Chain: F: PDB Molecule:abl interactor 2; PDBTitle: structure and control of the actin regulatory wave complex 42 c2efrB_ not modelled 18.1 23 PDB header:contractile protein Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain; PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution 43 c2ld7B_ not modelled 17.5 29 PDB header:transcription Chain: B: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of the msin3a pah3-sap30 sid complex 44 d1cxzb_ not modelled 17.4 11 Fold:Long alpha-hairpin Superfamily:HR1 repeat Family:HR1 repeat 45 c2npsD_ not modelled 16.7 13 PDB header:transport protein Chain: D: PDB Molecule:syntaxin-6; PDBTitle: crystal structure of the early endosomal snare complex 46 c3u1aC_ not modelled 16.5 17 PDB header:contractile protein Chain: C: PDB Molecule:smooth muscle tropomyosin alpha; PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha 47 c1deqD_ not modelled 16.4 19 PDB header: PDB COMPND: 48 d1nkpb_ not modelled 16.2 19 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 49 c3bvhE_ not modelled 15.2 27 PDB header:blood clotting Chain: E: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide 50 c3ghgK_ not modelled 15.1 12 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 51 c3gwnA_ not modelled 15.1 31 PDB header:oxidoreductase Chain: A: PDB Molecule:probable fad-linked sulfhydryl oxidase r596; PDBTitle: crystal structure of the fad binding domain from mimivirus sulfhydryl2 oxidase r596 52 c3okqA_ not modelled 15.1 20 PDB header:protein binding Chain: A: PDB Molecule:bud site selection protein 6; PDBTitle: crystal structure of a core domain of yeast actin nucleation cofactor2 bud6 53 c2ki0A_ not modelled 15.0 38 PDB header:de novo protein Chain: A: PDB Molecule:ds119; PDBTitle: nmr structure of a de novo designed beta alpha beta 54 c3b5nF_ not modelled 14.8 7 PDB header:membrane protein Chain: F: PDB Molecule:protein sso1; PDBTitle: structure of the yeast plasma membrane snare complex 55 c2npsB_ not modelled 14.6 13 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 13; PDBTitle: crystal structure of the early endosomal snare complex 56 c1ci6A_ not modelled 14.4 19 PDB header:transcription Chain: A: PDB Molecule:transcription factor atf-4; PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer 57 c3hizB_ not modelled 14.1 14 PDB header:transferase/oncoprotein Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha 58 c1a92B_ not modelled 14.0 35 PDB header:leucine zipper Chain: B: PDB Molecule:delta antigen; PDBTitle: oligomerization domain of hepatitis delta antigen 59 c2e43A_ not modelled 13.9 17 PDB header:transcription/dna Chain: A: PDB Molecule:ccaat/enhancer-binding protein beta; PDBTitle: crystal structure of c/ebpbeta bzip homodimer k269a mutant2 bound to a high affinity dna fragment 60 c3mkxC_ not modelled 13.5 23 PDB header:antiviral protein Chain: C: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of bst2/tetherin 61 c1fosE_ not modelled 13.1 11 PDB header:transcription/dna Chain: E: PDB Molecule:p55-c-fos proto-oncogene protein; PDBTitle: two human c-fos:c-jun:dna complexes 62 c1t3jA_ not modelled 12.9 19 PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant 63 d1fxkc_ not modelled 12.7 21 Fold:Long alpha-hairpin Superfamily:Prefoldin Family:Prefoldin 64 c3eukC_ not modelled 12.5 17 PDB header:cell cycle Chain: C: PDB Molecule:chromosome partition protein mukb, linker; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, asymmetric dimer 65 c2qihA_ not modelled 12.2 17 PDB header:cell adhesion Chain: A: PDB Molecule:protein uspa1; PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from2 moraxella catarrhalis 66 c2fxmB_ not modelled 12.1 21 PDB header:contractile protein Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform; PDBTitle: structure of the human beta-myosin s2 fragment 67 c2xdjF_ not modelled 11.0 22 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 68 c2js5B_ not modelled 10.7 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: nmr structure of protein q60c73_metca. northeast structural2 genomics consortium target mcr1 69 c1qu7A_ not modelled 10.6 9 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor 70 c3a5tB_ not modelled 10.5 14 PDB header:transcription regulator/dna Chain: B: PDB Molecule:transcription factor mafg; PDBTitle: crystal structure of mafg-dna complex 71 d1slqa_ not modelled 10.4 29 Fold:VP4 membrane interaction domain Superfamily:VP4 membrane interaction domain Family:VP4 membrane interaction domain 72 c3hnwB_ not modelled 10.4 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 73 c1deqF_ not modelled 10.3 16 PDB header: PDB COMPND: 74 d1r05a_ not modelled 10.2 26 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 75 d2azeb1 not modelled 10.1 13 Fold:E2F-DP heterodimerization region Superfamily:E2F-DP heterodimerization region Family:E2F dimerization segment 76 c3dbzB_ not modelled 10.0 21 PDB header:sugar binding protein Chain: B: PDB Molecule:pulmonary surfactant-associated protein d; PDBTitle: human surfactant protein d 77 c1ce0B_ not modelled 9.9 19 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 78 d1nlwa_ not modelled 9.8 17 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 79 c3layF_ not modelled 9.5 16 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 80 c1gk6B_ not modelled 9.3 18 PDB header:vimentin Chain: B: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b) 81 c2wukD_ not modelled 9.1 14 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 82 c1rb6C_ not modelled 8.9 30 PDB header:dna binding protein Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel trimer of gcn4-leucine zipper core mutant as2 n16a tetragonal form 83 c1swiA_ not modelled 8.9 30 PDB header:leucine zipper Chain: A: PDB Molecule:gcn4p1; PDBTitle: gcn4-leucine zipper core mutant as n16a complexed with2 benzene 84 c1ij3B_ not modelled 8.4 30 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 85 c1sfcD_ not modelled 8.4 17 PDB header:transport protein Chain: D: PDB Molecule:protein (snap-25b); PDBTitle: neuronal synaptic fusion complex 86 c1t2kD_ not modelled 8.3 19 PDB header:transcription/dna Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2; PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna 87 c3g9rF_ not modelled 8.3 32 PDB header:viral protein Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation 88 c2d4yA_ not modelled 8.3 25 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 89 c2xnxM_ not modelled 8.3 33 PDB header:cell adhesion Chain: M: PDB Molecule:m protein; PDBTitle: bc1 fragment of streptococcal m1 protein in complex with human2 fibrinogen 90 c1g2cN_ not modelled 8.2 19 PDB header:viral protein Chain: N: PDB Molecule:fusion protein (f); PDBTitle: human respiratory syncytial virus fusion protein core 91 c3gwlB_ not modelled 8.2 24 PDB header:oxidoreductase Chain: B: PDB Molecule:fad-linked sulfhydryl oxidase; PDBTitle: crystal structure of asfv pb119l, a viral sulfhydryl oxidase 92 c1n73C_ not modelled 8.1 18 PDB header:blood clotting Chain: C: PDB Molecule:fibrin gamma chain; PDBTitle: fibrin d-dimer, lamprey complexed with the peptide ligand: gly-his-2 arg-pro-amide 93 c1ij2C_ not modelled 8.0 28 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvtl coiled-coil trimer with threonine at the a(16)2 position 94 c1l4aD_ not modelled 7.9 13 PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:s-snap25 fusion protein; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 95 c1rb1A_ not modelled 7.9 28 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 96 c1rb1B_ not modelled 7.9 28 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 97 c3k7zA_ not modelled 7.9 28 PDB header:dna binding protein Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 98 c3k7zB_ not modelled 7.9 28 PDB header:dna binding protein Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-leucine zipper core mutant as n16a trigonal automatic2 solution 99 c2ke4A_ not modelled 7.8 16 PDB header:membrane protein Chain: A: PDB Molecule:cdc42-interacting protein 4; PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0