Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	I	P	R	I	Y	H	P	E	P	L	T	S	H	S	H	I	A	L	C	E	D	A	A	N	H	I	G	R	V	L	R	M	G	P	G	Q	A	L	Q	L	F	D	G	S	N	Q	V	F	D	A	E	I	T	S	A	S	K	K
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	V	E	V	K	V	L	E	G	Q	I	D	D	R	E	S	P	L	H	I	H	L	G	Q	V	M	S	R	G	E	K	M	E	F	T	I	Q	K	S	I	E	L	G	V	S	L	I	T	P	L	F	S	E	R	C	G	V	K	L	D
Secondary structure
SS confidence
Disorder											?			?																																											?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	E	R	L	N	K	K	L	Q	Q	W	Q	K	I	A	I	A	A	C	E	Q	C	G	R	N	R	V	P	E	I	R	P	A	M	D	L	E	A	W	C	A	E	Q	D	E	G	L	K	L	N	L	H	P	R	A	S	N	S	I	N
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	L	P	L	P	V	E	R	V	R	L	L	I	G	P	E	G	G	L	S	A	D	E	I	A	M	T	A	R	Y	Q	F	T	D	I	L	L	G	P	R	V	L	R	T	E	T	T	A	L	T	A	I	T	A	L	Q	V	R	F	G
Secondary structure
SS confidence
Disorder		?	?	?	?																																																							?	?
Disorder confidence
		.	.	.
Sequence		D	L	G
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1vhy chain B Region: 3 - 243 Aligned: 233 Modelled: 229 Confidence: 100.0% Identity: 63% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein hi0303; PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558 Phyre2 PDB 1vhk chain A Region: 4 - 242 Aligned: 230 Modelled: 239 Confidence: 100.0% Identity: 28% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein Phyre2 PDB 3kw2 chain A Region: 3 - 243 Aligned: 232 Modelled: 228 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis Phyre2 PDB 2egw chain B Region: 3 - 237 Aligned: 227 Modelled: 227 Confidence: 100.0% Identity: 25% PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand Phyre2 PDB 1z85 chain B Region: 4 - 242 Aligned: 216 Modelled: 215 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution Phyre2 PDB 1nxz chain A domain 2 Region: 74 - 243 Aligned: 170 Modelled: 167 Confidence: 100.0% Identity: 73% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YggJ C-terminal domain-like Phyre2 PDB 2cx8 chain B Region: 64 - 241 Aligned: 172 Modelled: 171 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) Phyre2 PDB 1vhk chain A domain 2 Region: 73 - 242 Aligned: 161 Modelled: 170 Confidence: 100.0% Identity: 33% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YggJ C-terminal domain-like Phyre2 PDB 1v6z chain A domain 2 Region: 74 - 241 Aligned: 162 Modelled: 161 Confidence: 100.0% Identity: 31% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: YggJ C-terminal domain-like Phyre2 PDB 1nxz chain A domain 1 Region: 2 - 73 Aligned: 72 Modelled: 72 Confidence: 99.7% Identity: 51% Fold: PUA domain-like Superfamily: PUA domain-like Family: YggJ N-terminal domain-like Phyre2 PDB 1vhk chain A domain 1 Region: 4 - 71 Aligned: 68 Modelled: 68 Confidence: 99.5% Identity: 19% Fold: PUA domain-like Superfamily: PUA domain-like Family: YggJ N-terminal domain-like Phyre2 PDB 2qmm chain A domain 1 Region: 154 - 243 Aligned: 84 Modelled: 84 Confidence: 96.4% Identity: 20% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: AF1056-like Phyre2 PDB 3ai9 chain X Region: 154 - 239 Aligned: 79 Modelled: 74 Confidence: 96.2% Identity: 16% PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase Phyre2 PDB 1v6z chain A domain 1 Region: 20 - 59 Aligned: 39 Modelled: 40 Confidence: 95.9% Identity: 28% Fold: PUA domain-like Superfamily: PUA domain-like Family: YggJ N-terminal domain-like Phyre2 PDB 1k3r chain A Region: 156 - 238 Aligned: 80 Modelled: 80 Confidence: 93.9% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum Phyre2 PDB 1gz0 chain A domain 1 Region: 74 - 205 Aligned: 116 Modelled: 116 Confidence: 93.8% Identity: 13% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 1ipa chain A domain 1 Region: 70 - 232 Aligned: 146 Modelled: 146 Confidence: 93.6% Identity: 14% Fold: alpha/beta knot Superfamily: alpha/beta knot Family: SpoU-like RNA 2'-O ribose methyltransferase Phyre2 PDB 1gz0 chain G Region: 74 - 232 Aligned: 143 Modelled: 136 Confidence: 93.2% Identity: 11% PDB header:transferase Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh; PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb Phyre2 PDB 1x7p chain B Region: 68 - 232 Aligned: 152 Modelled: 163 Confidence: 92.9% Identity: 12% PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet Phyre2 PDB 1zjr chain A Region: 80 - 232 Aligned: 136 Modelled: 136 Confidence: 92.7% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme Phyre2 1 c1vhyB_ 2 c1vhkA_ 3 c3kw2A_ 4 c2egwB_ 5 c1z85B_ 6 d1nxza2 7 c2cx8B_ 8 d1vhka2 9 d1v6za2 10 d1nxza1 11 d1vhka1 12 d2qmma1 13 c3ai9X_ 14 d1v6za1 15 c1k3rA_ 16 d1gz0a1 17 d1ipaa1 18 c1gz0G_ 19 c1x7pB_ 20 c1zjrA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1vhyB_ 100.0 63 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein hi0303; PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558 2 c1vhkA_ 100.0 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 3 c3kw2A_ 100.0 30 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 4 c2egwB_ 100.0 25 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 5 c1z85B_ 100.0 25 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein tm1380; PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution 6 d1nxza2 100.0 73 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 7 c2cx8B_ 100.0 31 PDB header:transferase Chain: B: PDB Molecule:methyl transferase; PDBTitle: crystal structure of methyltransferase with ligand(sah) 8 d1vhka2 100.0 33 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 9 d1v6za2 100.0 31 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YggJ C-terminal domain-like 10 d1nxza1 99.7 51 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 11 d1vhka1 99.5 19 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 12 d2qmma1 96.4 20 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 13 c3ai9X_ 96.2 16 PDB header:transferase Chain: X: PDB Molecule:upf0217 protein mj1640; PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase 14 d1v6za1 95.9 28 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 15 c1k3rA_ 93.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein mt0001; PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum 16 d1gz0a1 93.8 13 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 17 d1ipaa1 93.6 14 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 18 c1gz0G_ 93.2 11 PDB header:transferase Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh; PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb 19 c1x7pB_ 92.9 12 PDB header:transferase Chain: B: PDB Molecule:rrna methyltransferase; PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet 20 c1zjrA_ 92.7 12 PDB header:transferase Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase; PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme 21 c2ha8A_ not modelled 92.5 13 PDB header:rna binding protein Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein; PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1 22 c2h6rG_ not modelled 91.9 15 PDB header:isomerase Chain: G: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase (tim) from2 methanocaldococcus jannaschii 23 c3ktyA_ not modelled 91.6 13 PDB header:transferase Chain: A: PDB Molecule:probable methyltransferase; PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i 24 c2i6dA_ not modelled 91.0 13 PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis. 25 c3onpA_ not modelled 90.3 15 PDB header:transferase Chain: A: PDB Molecule:trna/rrna methyltransferase (spou); PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides 26 c3l8uA_ not modelled 89.1 13 PDB header:transferase Chain: A: PDB Molecule:putative rrna methylase; PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159 27 c3ilkB_ not modelled 88.5 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380; PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20 28 d1mxia_ not modelled 87.6 13 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 29 d1v2xa_ not modelled 87.4 15 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:SpoU-like RNA 2'-O ribose methyltransferase 30 c3ic6A_ not modelled 86.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative methylase family protein; PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae 31 d1mxsa_ not modelled 83.1 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 32 d1wbha1 not modelled 82.6 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 33 d1k3ra2 not modelled 82.2 19 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:Hypothetical protein MTH1 (MT0001), dimerisation domain 34 c1ipaA_ not modelled 80.2 13 PDB header:transferase Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase; PDBTitle: crystal structure of rna 2'-o ribose methyltransferase 35 d1rpxa_ not modelled 77.9 12 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 36 c2qiwA_ not modelled 76.6 14 PDB header:transferase Chain: A: PDB Molecule:pep phosphonomutase; PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution 37 c2c3zA_ not modelled 75.7 15 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus 38 d2flia1 not modelled 70.6 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 39 c2v82A_ not modelled 68.7 14 PDB header:lyase Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase; PDBTitle: kdpgal complexed to kdpgal 40 d1a53a_ not modelled 67.9 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 41 c3inpA_ not modelled 67.4 13 PDB header:isomerase Chain: A: PDB Molecule:d-ribulose-phosphate 3-epimerase; PDBTitle: 2.05 angstrom resolution crystal structure of d-ribulose-phosphate 3-2 epimerase from francisella tularensis. 42 c3gyqB_ not modelled 67.3 17 PDB header:transferase Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase; PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex 43 d1j5ta_ not modelled 67.1 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 44 c3qjaA_ not modelled 66.1 13 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form 45 d1vhca_ not modelled 65.0 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 46 c3db3A_ not modelled 64.1 8 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1; PDBTitle: crystal structure of the tandem tudor domains of the e3 ubiquitin-2 protein ligase uhrf1 in complex with trimethylated histone h3-k93 peptide 47 c3e5yB_ not modelled 63.4 19 PDB header:transferase Chain: B: PDB Molecule:trmh family rna methyltransferase; PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei 48 d1znna1 not modelled 63.3 14 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:PdxS-like 49 c3igsB_ not modelled 60.2 16 PDB header:isomerase Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2; PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase 50 c1znnF_ not modelled 59.7 14 PDB header:biosynthetic protein Chain: F: PDB Molecule:plp synthase; PDBTitle: structure of the synthase subunit of plp synthase 51 c2e6zA_ not modelled 53.2 15 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 52 d1piia2 not modelled 49.7 10 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 53 d1ns5a_ not modelled 48.5 21 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 54 c2e5pA_ not modelled 47.5 14 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein) 55 c2eqmA_ not modelled 46.4 15 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 [homo sapiens] 56 d1y71a1 not modelled 45.7 20 Fold:SH3-like barrel Superfamily:Kinase-associated protein B-like Family:Kinase-associated protein B-like 57 d1i4na_ not modelled 44.6 16 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 58 d1wa3a1 not modelled 44.6 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 59 c3iz5Y_ not modelled 43.7 13 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 60 d1to0a_ not modelled 43.0 13 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 61 d2csua1 not modelled 39.7 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 62 d3bbda1 not modelled 39.7 17 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:EMG1/NEP1-like 63 d1vc4a_ not modelled 38.8 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 64 d1sf8a_ not modelled 38.5 6 Fold:HSP90 C-terminal domain Superfamily:HSP90 C-terminal domain Family:HSP90 C-terminal domain 65 c2equA_ not modelled 38.5 15 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 66 c1yadD_ not modelled 38.2 12 PDB header:transcription Chain: D: PDB Molecule:regulatory protein teni; PDBTitle: structure of teni from bacillus subtilis 67 c2eqjA_ not modelled 37.9 14 PDB header:transcription Chain: A: PDB Molecule:metal-response element-binding transcription PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2 68 d1d9ea_ not modelled 37.3 9 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 69 c2csuB_ not modelled 37.3 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 70 d1w0ma_ not modelled 36.1 18 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 71 c2jvvA_ not modelled 35.8 24 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 72 c2kvqG_ not modelled 35.8 24 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 73 d1xi3a_ not modelled 35.8 14 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 74 d1te7a_ not modelled 35.8 12 Fold:PUA domain-like Superfamily:PUA domain-like Family:yqfB-like 75 c2yw3E_ not modelled 35.7 19 PDB header:lyase Chain: E: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- PDBTitle: crystal structure analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-2 deydro-3-deoxyphosphogluconate aldolase from tthb1 76 d1q6oa_ not modelled 35.6 11 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 77 c2zpaB_ not modelled 35.1 17 PDB header:transferase Chain: B: PDB Molecule:uncharacterized protein ypfi; PDBTitle: crystal structure of trna(met) cytidine acetyltransferase 78 c3sz8D_ not modelled 34.9 9 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 79 c3qiiA_ not modelled 34.0 11 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 80 d1tqja_ not modelled 33.4 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 81 d1xm3a_ not modelled 33.3 16 Fold:TIM beta/alpha-barrel Superfamily:ThiG-like Family:ThiG-like 82 c2xk0A_ not modelled 33.3 3 PDB header:transcription Chain: A: PDB Molecule:polycomb protein pcl; PDBTitle: solution structure of the tudor domain from drosophila2 polycomblike (pcl) 83 c3qc3B_ not modelled 32.5 15 PDB header:isomerase Chain: B: PDB Molecule:d-ribulose-5-phosphate-3-epimerase; PDBTitle: crystal structure of a d-ribulose-5-phosphate-3-epimerase (np_954699)2 from homo sapiens at 2.20 a resolution 84 d1nz9a_ not modelled 32.1 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 85 d1vr4a1 not modelled 30.6 14 Fold:Dodecin subunit-like Superfamily:YbjQ-like Family:YbjQ-like 86 c3ih1A_ not modelled 28.9 14 PDB header:lyase Chain: A: PDB Molecule:methylisocitrate lyase; PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis 87 d1vh0a_ not modelled 28.9 10 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 88 d1vqot1 not modelled 28.6 13 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 89 d2do3a1 not modelled 28.3 13 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 90 c2qjhH_ not modelled 27.0 12 PDB header:lyase Chain: H: PDB Molecule:putative aldolase mj0400; PDBTitle: m. jannaschii adh synthase covalently bound to2 dihydroxyacetone phosphate 91 c3o63B_ not modelled 27.0 12 PDB header:transferase Chain: B: PDB Molecule:probable thiamine-phosphate pyrophosphorylase; PDBTitle: crystal structure of thiamin phosphate synthase from mycobacterium2 tuberculosis 92 c3dx5A_ not modelled 27.0 10 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 93 d1nppa2 not modelled 27.0 15 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 94 d1wjsa_ not modelled 26.6 9 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 95 c3ajxA_ not modelled 26.4 17 PDB header:lyase Chain: A: PDB Molecule:3-hexulose-6-phosphate synthase; PDBTitle: crystal structure of 3-hexulose-6-phosphate synthase 96 d2tpsa_ not modelled 26.4 15 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 97 d1y2ia_ not modelled 26.0 17 Fold:Dodecin subunit-like Superfamily:YbjQ-like Family:YbjQ-like 98 c1y2iC_ not modelled 26.0 17 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein s0862; PDBTitle: crystal structure of mcsg target apc27401 from shigella2 flexneri 99 c3navB_ not modelled 26.0 16 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 100 d1i60a_ not modelled 25.7 10 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 101 d2zjrr1 not modelled 25.3 17 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 102 c3qkbB_ not modelled 25.1 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function which belongs to2 pfam duf74 family (pepe_0654) from pediococcus pentosaceus atcc 257453 at 2.73 a resolution 103 c3exsB_ not modelled 24.7 11 PDB header:lyase Chain: B: PDB Molecule:rmpd (hexulose-6-phosphate synthase); PDBTitle: crystal structure of kgpdc from streptococcus mutans in2 complex with d-r5p 104 c3q1jA_ not modelled 24.7 17 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 1 of human phd finger protein 20 105 c3p8bB_ not modelled 24.1 22 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 106 c3f4wA_ not modelled 23.9 18 PDB header:synthase, lyase Chain: A: PDB Molecule:putative hexulose 6 phosphate synthase; PDBTitle: the 1.65a crystal structure of 3-hexulose-6-phosphate2 synthase from salmonella typhimurium 107 c2xhcA_ not modelled 23.8 15 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) 108 d1o54a_ not modelled 23.3 24 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:tRNA(1-methyladenosine) methyltransferase-like 109 d1wgsa_ not modelled 22.8 13 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:Chromo barrel domain 110 d1wjqa_ not modelled 22.7 16 Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:MBT repeat 111 c3lyeA_ not modelled 22.5 13 PDB header:hydrolase Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase; PDBTitle: crystal structure of oxaloacetate acetylhydrolase 112 d2d59a1 not modelled 22.5 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 113 c2kw8A_ not modelled 22.4 20 PDB header:protein binding Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein; PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase 114 c3q58A_ not modelled 22.3 18 PDB header:isomerase Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase; PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica 115 d2nu7a1 not modelled 22.2 7 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 116 c2e5qA_ not modelled 22.0 15 PDB header:transcription Chain: A: PDB Molecule:phd finger protein 19; PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens] 117 d1o6da_ not modelled 21.5 18 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:YbeA-like 118 d1o60a_ not modelled 21.4 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 119 c2rd5D_ not modelled 20.8 10 PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 120 d2qwva1 not modelled 20.7 17 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0