PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2i6dA_

Fold library id	PDB Header	Molecule	Title
c2i6dA_	PDB header: transferase	Chain: A: PDB Molecule: rna methyltransferase, trmh family;	PDBTitle: the structure of a putative rna methyltransferase of the2 trmh family from porphyromonas gingivalis.

Links to external resources
Added to library: Tue Mar 16 13:22:25 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A X L S A N Q I K F L R S L R E R K Y R L R E Q A F A V E G P K L V G E X L P F Y R C R X L V G T A A X L R A V S T P H D A E V V E L P E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T S G G G S
T S
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F D F K R I S T Q T T P Q P L X A V F D L P A E P E P V V E G L T L L L D G V Q D P G N V G T I L R T A D W F G I R H V W L G T G S A D V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T
S S S
S
S S
T
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S P K V V Q A S X G A L A R V Q P T P L K N T V D T L A Y F R R Q G I P V Y G A F L D G Q S L Y E A P L P N F T E P A I L V L G S E G R G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T S T T G G G T
S
T T
T T T S
T T S
B T T T B S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 .

Sequence S P E V A A E I T D R L T I P A S G L S V E S L N V A I A T A I L C S E W R R R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	X	L	S	A	N	Q	I	K	F	L	R	S	L	R	E	R	K	Y	R	L	R	E	Q	A	F	A	V	E	G	P	K	L	V	G	E	X	L	P	F	Y	R	C	R	X	L	V	G	T	A	A	X	L	R	A	V	S	T	P	H	D	A	E	V	V	E	L	P	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S								T						S								G	G	G	S														T	S				T	T								T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	D	F	K	R	I	S	T	Q	T	T	P	Q	P	L	X	A	V	F	D	L	P	A	E	P	E	P	V	V	E	G	L	T	L	L	L	D	G	V	Q	D	P	G	N	V	G	T	I	L	R	T	A	D	W	F	G	I	R	H	V	W	L	G	T	G	S	A	D	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	T			S	S	S			S																	S							S																		T								T	T				T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	P	K	V	V	Q	A	S	X	G	A	L	A	R	V	Q	P	T	P	L	K	N	T	V	D	T	L	A	Y	F	R	R	Q	G	I	P	V	Y	G	A	F	L	D	G	Q	S	L	Y	E	A	P	L	P	N	F	T	E	P	A	I	L	V	L	G	S	E	G	R	G	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						T	S	T	T	G	G	G	T							S												T	T													T	T	T	S					T	T	S								B	T	T	T	B	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Sequence	S	P	E	V	A	A	E	I	T	D	R	L	T	I	P	A	S	G	L	S	V	E	S	L	N	V	A	I	A	T	A	I	L	C	S	E	W	R	R	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T		S									S	S																					T