Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	S	K	F	K	R	N	K	H	Q	Q	H	L	A	Q	L	P	K	I	S	Q	S	V	D	D	V	D	F	F	Y	A	P	A	D	F	R	E	T	L	L	E	K	I	A	S	A	K	Q	R	I	C	I	V	A	L	Y	L	E	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?															?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	D	G	G	K	G	I	L	N	A	L	Y	E	A	K	R	Q	R	P	E	L	D	V	R	V	L	V	D	W	H	R	A	Q	R	G	R	I	G	A	A	A	S	N	T	N	A	D	W	Y	C	R	M	A	Q	E	N	P	G	V	D
Secondary structure
SS confidence
Disorder																																	?		?	?	?	?	?	?	?	?	?		?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	P	V	Y	G	V	P	I	N	T	R	E	A	L	G	V	L	H	F	K	G	F	I	I	D	D	S	V	L	Y	S	G	A	S	L	N	D	V	Y	L	H	Q	H	D	K	Y	R	Y	D	R	Y	H	L	I	R	N	R	K	M	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	I	M	F	E	W	V	T	Q	N	I	M	N	G	R	G	V	N	R	L	D	D	V	N	R	P	K	S	P	E	I	K	N	D	I	R	L	F	R	Q	E	L	R	D	A	A	Y	H	F	Q	G	D	A	D	N	D	Q	L	S	V
Secondary structure
SS confidence
Disorder																									?	?				?															?	?				?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	P	L	V	G	L	G	K	S	S	L	L	N	K	T	I	F	H	L	M	P	C	A	E	Q	K	L	T	I	C	T	P	Y	F	N	L	P	A	I	L	V	R	N	I	I	Q	L	L	R	E	G	K	K	V	E	I	I	V	G	D
Secondary structure
SS confidence
Disorder								?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		K	T	A	N	D	F	Y	I	P	E	D	E	P	F	K	I	I	G	A	L	P	Y	L	Y	E	I	N	L	R	R	F	L	S	R	L	Q	Y	Y	V	N	T	D	Q	L	V	V	R	L	W	K	D	D	D	N	T	Y	H	L	K	G
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?		?	?	?	?																									?	?	?	?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		M	W	V	D	D	K	W	M	L	I	T	G	N	N	L	N	P	R	A	W	R	L	D	L	E	N	A	I	L	I	H	D	P	Q	L	E	L	A	P	Q	R	E	K	E	L	E	L	I	R	E	H	T	T	I	V	K	H	Y	R	D
Secondary structure
SS confidence
Disorder																																																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Sequence		L	Q	S	I	A	D	Y	P	V	K	V	R	K	L	I	R	R	L	R	R	I	R	I	D	R	L	I	S	R	I	L
Secondary structure
SS confidence
Disorder								?	?																					?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3hsi chain C Region: 6 - 451 Aligned: 444 Modelled: 446 Confidence: 100.0% Identity: 46% PDB header:transferase Chain: C: PDB Molecule:phosphatidylserine synthase; PDBTitle: crystal structure of phosphatidylserine synthase haemophilus2 influenzae rd kw20 Phyre2 PDB 1v0s chain A Region: 23 - 415 Aligned: 377 Modelled: 390 Confidence: 100.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:phospholipase d; PDBTitle: uninhibited form of phospholipase d from streptomyces sp.2 strain pmf Phyre2 PDB 1v0w chain A domain 1 Region: 33 - 192 Aligned: 153 Modelled: 160 Confidence: 99.9% Identity: 14% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Phospholipase D Phyre2 PDB 1xdo chain B Region: 29 - 414 Aligned: 280 Modelled: 291 Confidence: 99.9% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase Phyre2 PDB 1xdp chain A domain 3 Region: 254 - 416 Aligned: 136 Modelled: 140 Confidence: 99.9% Identity: 18% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 1byr chain A Region: 248 - 415 Aligned: 141 Modelled: 144 Confidence: 99.9% Identity: 15% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Nuclease Phyre2 PDB 1v0w chain A domain 2 Region: 250 - 416 Aligned: 162 Modelled: 167 Confidence: 99.9% Identity: 19% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Phospholipase D Phyre2 PDB 2o8r chain A Region: 29 - 414 Aligned: 283 Modelled: 306 Confidence: 99.6% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis Phyre2 PDB 2o8r chain A domain 3 Region: 245 - 414 Aligned: 140 Modelled: 143 Confidence: 98.5% Identity: 14% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 1xdp chain A domain 4 Region: 252 - 414 Aligned: 130 Modelled: 138 Confidence: 98.1% Identity: 15% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 1q32 chain C Region: 133 - 390 Aligned: 236 Modelled: 242 Confidence: 97.9% Identity: 14% PDB header:replication,transcription,hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna2 phosphodiesterase Phyre2 PDB 3sq3 chain C Region: 133 - 390 Aligned: 237 Modelled: 242 Confidence: 97.7% Identity: 14% PDB header:hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna phosphodiesterase2 h182a mutant Phyre2 PDB 2o8r chain A domain 4 Region: 245 - 414 Aligned: 135 Modelled: 145 Confidence: 97.4% Identity: 13% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Polyphosphate kinase C-terminal domain Phyre2 PDB 2c1l chain A Region: 245 - 391 Aligned: 122 Modelled: 123 Confidence: 97.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:restriction endonuclease; PDBTitle: structure of the bfii restriction endonuclease Phyre2 PDB 1jy1 chain A domain 2 Region: 351 - 390 Aligned: 40 Modelled: 40 Confidence: 95.8% Identity: 30% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Tyrosyl-DNA phosphodiesterase TDP1 Phyre2 PDB 1nop chain B Region: 351 - 390 Aligned: 40 Modelled: 40 Confidence: 95.6% Identity: 35% PDB header:hydrolase/dna Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide Phyre2 PDB 1q32 chain A domain 2 Region: 351 - 390 Aligned: 40 Modelled: 40 Confidence: 94.1% Identity: 30% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Tyrosyl-DNA phosphodiesterase TDP1 Phyre2 PDB 2f5t chain X domain 2 Region: 34 - 119 Aligned: 74 Modelled: 86 Confidence: 62.9% Identity: 16% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: TrmB middle domain-like Phyre2 PDB 1qzq chain A domain 1 Region: 354 - 377 Aligned: 24 Modelled: 24 Confidence: 62.8% Identity: 29% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Tyrosyl-DNA phosphodiesterase TDP1 Phyre2 PDB 1q32 chain A domain 1 Region: 346 - 381 Aligned: 36 Modelled: 36 Confidence: 51.7% Identity: 11% Fold: Phospholipase D/nuclease Superfamily: Phospholipase D/nuclease Family: Tyrosyl-DNA phosphodiesterase TDP1 Phyre2 1 c3hsiC_ 2 c1v0sA_ 3 d1v0wa1 4 c1xdoB_ 5 d1xdpa3 6 d1byra_ 7 d1v0wa2 8 c2o8rA_ 9 d2o8ra3 10 d1xdpa4 11 c1q32C_ 12 c3sq3C_ 13 d2o8ra4 14 c2c1lA_ 15 d1jy1a2 16 c1nopB_ 17 d1q32a2 18 d2f5tx2 19 d1qzqa1 20 d1q32a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3hsiC_ 100.0 46 PDB header:transferase Chain: C: PDB Molecule:phosphatidylserine synthase; PDBTitle: crystal structure of phosphatidylserine synthase haemophilus2 influenzae rd kw20 2 c1v0sA_ 100.0 16 PDB header:hydrolase Chain: A: PDB Molecule:phospholipase d; PDBTitle: uninhibited form of phospholipase d from streptomyces sp.2 strain pmf 3 d1v0wa1 99.9 14 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 4 c1xdoB_ 99.9 19 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 5 d1xdpa3 99.9 18 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 6 d1byra_ 99.9 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Nuclease 7 d1v0wa2 99.9 19 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 8 c2o8rA_ 99.6 18 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 9 d2o8ra3 98.5 14 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 10 d1xdpa4 98.1 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 11 c1q32C_ 97.9 14 PDB header:replication,transcription,hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna2 phosphodiesterase 12 c3sq3C_ 97.7 14 PDB header:hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna phosphodiesterase2 h182a mutant 13 d2o8ra4 97.4 13 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 14 c2c1lA_ 97.0 13 PDB header:hydrolase Chain: A: PDB Molecule:restriction endonuclease; PDBTitle: structure of the bfii restriction endonuclease 15 d1jy1a2 95.8 30 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 16 c1nopB_ 95.6 35 PDB header:hydrolase/dna Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide 17 d1q32a2 94.1 30 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 18 d2f5tx2 62.9 16 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:TrmB middle domain-like 19 d1qzqa1 62.8 29 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 20 d1q32a1 51.7 11 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 21 c2f5tX_ not modelled 51.3 16 PDB header:transcription Chain: X: PDB Molecule:archaeal transcriptional regulator trmb; PDBTitle: crystal structure of the sugar binding domain of the archaeal2 transcriptional regulator trmb 22 d1jy1a1 not modelled 38.2 14 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Tyrosyl-DNA phosphodiesterase TDP1 23 c2a5hC_ not modelled 37.2 11 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 24 d1vdda_ not modelled 22.7 22 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 25 c1vddC_ not modelled 20.0 22 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 26 d1f0ya2 not modelled 18.8 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 27 d1gz0a2 not modelled 17.3 11 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 28 c2x7mA_ not modelled 17.3 18 PDB header:hydrolase Chain: A: PDB Molecule:archaemetzincin; PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution 29 d1f8ya_ not modelled 16.8 6 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 30 c1t3gB_ not modelled 16.7 8 PDB header:membrane protein Chain: B: PDB Molecule:x-linked interleukin-1 receptor accessory PDBTitle: crystal structure of the toll/interleukin-1 receptor (tir)2 domain of human il-1rapl 31 c3hu5B_ not modelled 16.5 15 PDB header:hydrolase Chain: B: PDB Molecule:isochorismatase family protein; PDBTitle: crystal structure of isochorismatase family protein from desulfovibrio2 vulgaris subsp. vulgaris str. hildenborough 32 d2bdea1 not modelled 16.0 24 Fold:HAD-like Superfamily:HAD-like Family:5' nucleotidase-like 33 d1s2da_ not modelled 16.0 14 Fold:Flavodoxin-like Superfamily:N-(deoxy)ribosyltransferase-like Family:N-deoxyribosyltransferase 34 d1e8ob_ not modelled 15.8 11 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 35 c1b9xC_ not modelled 15.5 21 PDB header:signaling protein Chain: C: PDB Molecule:protein (phosducin); PDBTitle: structural analysis of phosducin and its phosphorylation-2 regulated interaction with transducin 36 c2l82A_ not modelled 15.5 26 PDB header:de novo protein Chain: A: PDB Molecule:designed protein or32; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32 37 d1x9ga_ not modelled 13.9 14 Fold:Isochorismatase-like hydrolases Superfamily:Isochorismatase-like hydrolases Family:Isochorismatase-like hydrolases 38 d1gz0f2 not modelled 13.0 11 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:RNA 2'-O ribose methyltransferase substrate binding domain 39 d1914a2 not modelled 11.5 12 Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14 Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14 40 d1j5pa4 not modelled 11.4 9 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 41 c1zrwA_ not modelled 10.9 46 PDB header:antimicrobial protein, antibiotic Chain: A: PDB Molecule:spinigerin; PDBTitle: solution structure of spinigerin in h20/tfe 10% 42 c1zrvA_ not modelled 10.9 46 PDB header:antimicrobial protein, antibiotic Chain: A: PDB Molecule:spinigerin; PDBTitle: solution structure of spinigerin in h20/tfe 50% 43 c2b34C_ not modelled 10.4 16 PDB header:hydrolase Chain: C: PDB Molecule:mar1 ribonuclease; PDBTitle: structure of mar1 ribonuclease from caenorhabditis elegans 44 c2jcmA_ not modelled 10.0 18 PDB header:hydrolase Chain: A: PDB Molecule:cytosolic purine 5'-nucleotidase; PDBTitle: crystal structure of human cytosolic 5'-nucleotidase ii in2 complex with beryllium trifluoride 45 c3gbcA_ not modelled 9.9 17 PDB header:hydrolase Chain: A: PDB Molecule:pyrazinamidase/nicotinamidas pnca; PDBTitle: determination of the crystal structure of the pyrazinamidase from2 m.tuberculosis : a structure-function analysis for prediction3 resistance to pyrazinamide 46 c2r60A_ not modelled 9.4 17 PDB header:transferase Chain: A: PDB Molecule:glycosyl transferase, group 1; PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii 47 c2jz2A_ not modelled 9.4 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ssl0352 protein; PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42 48 d1ldna1 not modelled 9.3 9 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 49 c3l2iB_ not modelled 9.3 8 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2. 50 c2kxeA_ not modelled 9.2 29 PDB header:transferase Chain: A: PDB Molecule:dna polymerase ii small subunit; PDBTitle: n-terminal domain of the dp1 subunit of an archaeal d-family dna2 polymerase 51 c1g4wR_ not modelled 8.9 11 PDB header:signaling protein Chain: R: PDB Molecule:protein tyrosine phosphatase sptp; PDBTitle: crystal structure of the salmonella tyrosine phosphatase2 and gtpase activating protein sptp 52 d1m6ia2 not modelled 8.8 19 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 53 d1guza1 not modelled 8.5 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 54 c3ua4A_ not modelled 8.1 14 PDB header:transferase Chain: A: PDB Molecule:protein arginine n-methyltransferase 5; PDBTitle: crystal structure of protein arginine methyltransferase prmt5 55 c3dy0B_ not modelled 7.9 20 PDB header:blood clotting, hydrolase inhibitor Chain: B: PDB Molecule:c-terminus plasma serine protease inhibitor; PDBTitle: crystal structure of cleaved pci bound to heparin 56 c1xeaD_ not modelled 7.8 8 PDB header:oxidoreductase Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae 57 d1ojua1 not modelled 7.7 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 58 d1im5a_ not modelled 7.5 11 Fold:Isochorismatase-like hydrolases Superfamily:Isochorismatase-like hydrolases Family:Isochorismatase-like hydrolases 59 c3gt0A_ not modelled 7.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:pyrroline-5-carboxylate reductase; PDBTitle: crystal structure of pyrroline 5-carboxylate reductase from bacillus2 cereus. northeast structural genomics consortium target bcr38b 60 c1lq8H_ not modelled 7.4 20 PDB header:blood clotting Chain: H: PDB Molecule:plasma serine protease inhibitor; PDBTitle: crystal structure of cleaved protein c inhibitor 61 d2g8la1 not modelled 7.2 24 Fold:AF1104-like Superfamily:AF1104-like Family:AF1104-like 62 c3oqhB_ not modelled 7.0 16 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein yvmc; PDBTitle: crystal structure of b. licheniformis cdps yvmc-blic 63 d1czan3 not modelled 6.9 22 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Hexokinase 64 d5ldha1 not modelled 6.7 9 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 65 d1x94a_ not modelled 6.4 10 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 66 d1sjpa3 not modelled 6.3 6 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:GroEL-like chaperone, intermediate domain 67 d1obba1 not modelled 6.3 11 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 68 d1llda1 not modelled 6.3 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 69 d1gqna_ not modelled 6.3 6 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 70 c3qufB_ not modelled 6.3 14 PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis 71 d1ez4a1 not modelled 6.2 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 72 d1u8xx1 not modelled 6.2 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 73 d1up7a1 not modelled 6.1 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 74 d2zdra2 not modelled 6.1 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 75 c1llcA_ not modelled 6.1 14 PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: structure determination of the allosteric l-lactate dehydrogenase from2 lactobacillus casei at 3.0 angstroms resolution 76 c2x0dA_ not modelled 6.1 23 PDB header:transferase Chain: A: PDB Molecule:wsaf; PDBTitle: apo structure of wsaf 77 d1jjcb4 not modelled 6.1 13 Fold:Ferredoxin-like Superfamily:Anticodon-binding domain of PheRS Family:Anticodon-binding domain of PheRS 78 d1a0rp_ not modelled 6.1 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Phosducin 79 c2v6bB_ not modelled 5.7 7 PDB header:oxidoreductase Chain: B: PDB Molecule:l-lactate dehydrogenase; PDBTitle: crystal structure of lactate dehydrogenase from deinococcus2 radiodurans (apo form) 80 c2yvaB_ not modelled 5.7 7 PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa 81 c2qupA_ not modelled 5.7 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh1478 protein; PDBTitle: crystal structure of uncharacterized protein bh1478 from bacillus2 halodurans 82 c2krcA_ not modelled 5.6 17 PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit delta; PDBTitle: solution structure of the n-terminal domain of bacillus2 subtilis delta subunit of rna polymerase 83 d4pgaa_ not modelled 5.6 12 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 84 c1a5zA_ not modelled 5.6 10 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: lactate dehydrogenase from thermotoga maritima (tmldh) 85 d1llca1 not modelled 5.6 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 86 d1ldma1 not modelled 5.5 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 87 c3js3C_ not modelled 5.5 8 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of type i 3-dehydroquinate dehydratase (arod) from2 clostridium difficile with covalent reaction intermediate 88 d2dx5a1 not modelled 5.5 19 Fold:PH domain-like barrel Superfamily:PH domain-like Family:VPS36 N-terminal domain-like 89 c3bsmD_ not modelled 5.5 12 PDB header:lyase Chain: D: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of d-mannonate dehydratase from2 chromohalobacter salexigens 90 d1x92a_ not modelled 5.4 15 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 91 d2bisa1 not modelled 5.4 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Glycosyl transferases group 1 92 c1914A_ not modelled 5.3 12 PDB header:alu domain Chain: A: PDB Molecule:signal recognition particle 9/14 fusion protein; PDBTitle: signal recognition particle alu rna binding heterodimer, srp9/14 93 d2p61a1 not modelled 5.3 7 Fold:Four-helical up-and-down bundle Superfamily:TM1646-like Family:TM1646-like 94 c2pr7A_ not modelled 5.3 12 PDB header:hydrolase Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family; PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution 95 d2bf5a1 not modelled 5.2 14 Fold:Monooxygenase (hydroxylase) regulatory protein Superfamily:Monooxygenase (hydroxylase) regulatory protein Family:Monooxygenase (hydroxylase) regulatory protein 96 c2x3yA_ not modelled 5.2 7 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei 97 c2aj6A_ not modelled 5.1 19 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein mw0638; PDBTitle: crystal structure of a putative gnat family acetyltransferase (mw0638)2 from staphylococcus aureus subsp. aureus at 1.63 a resolution 98 c2p61A_ not modelled 5.1 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tm_1646; PDBTitle: crystal structure of protein tm1646 from thermotoga2 maritima, pfam duf327

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0