PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3js3C_

Fold library id	PDB Header	Molecule	Title
c3js3C_	PDB header: lyase	Chain: C: PDB Molecule: 3-dehydroquinate dehydratase;	PDBTitle: crystal structure of type i 3-dehydroquinate dehydratase2 (arod) from clostridium difficile with covalent reaction3 intermediate

Links to external resources
Added to library: Sat Aug 28 16:54:15 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K R K V Q V K N I T I G E G R P K I C V P I I G K N K K D I I K E A K E L K D A C L D I I E W R V D F F E N V E N I K E V K E V L Y E L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S S S
S S T T T S S
S G G G
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S Y I H D I P L L F T F R S V V E G G E K L I S R D Y Y T T L N K E I S N T G L V D L I D V E L F M G D E V I D E V V N F A H K K E V K V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
G G G T
S
T S
S G G G
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I S N H D F N K T P K K E E I V S R L C R M Q E L G A D L P K I A V M P Q N E K D V L V L L E A T N E M F K I Y A D R P I I T M S M S G M G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
S
S S T T
S S
B
T G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . .

Sequence V I S R L C G E I F G S A L T F G A A K S V S A P G Q I S F K E L N S V L N L L H K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B
B S S S
S S T T
B T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	R	K	V	Q	V	K	N	I	T	I	G	E	G	R	P	K	I	C	V	P	I	I	G	K	N	K	K	D	I	I	K	E	A	K	E	L	K	D	A	C	L	D	I	I	E	W	R	V	D	F	F	E	N	V	E	N	I	K	E	V	K	E	V	L	Y	E	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T				T	S	S	S										S	S											T	T	T	S	S		S						G	G	G		T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	Y	I	H	D	I	P	L	L	F	T	F	R	S	V	V	E	G	G	E	K	L	I	S	R	D	Y	Y	T	T	L	N	K	E	I	S	N	T	G	L	V	D	L	I	D	V	E	L	F	M	G	D	E	V	I	D	E	V	V	N	F	A	H	K	K	E	V	K	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S									G	G	G	T		S																		T	S			S						G	G	G															T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	S	N	H	D	F	N	K	T	P	K	K	E	E	I	V	S	R	L	C	R	M	Q	E	L	G	A	D	L	P	K	I	A	V	M	P	Q	N	E	K	D	V	L	V	L	L	E	A	T	N	E	M	F	K	I	Y	A	D	R	P	I	I	T	M	S	M	S	G	M	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S																		T	T		S									S	S																	T	T		S	S		B						T	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence	V	I	S	R	L	C	G	E	I	F	G	S	A	L	T	F	G	A	A	K	S	V	S	A	P	G	Q	I	S	F	K	E	L	N	S	V	L	N	L	L	H	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T											B						B	S	S	S		S	S	T	T			B													T