 |
| Job Description | P23830 | | Confidence | 6.97% | Date | Wed Jan 25 15:20:43 GMT 2012 |
| Rank | 62 | Aligned Residues | 76 |
| % Identity | 16% | Template | c3oqhB_ |
| PDB info |
PDB header:ligase | Chain: B: PDB Molecule:putative uncharacterized protein yvmc; |
PDBTitle: crystal structure of b. licheniformis cdps yvmc-blic
|
| Resolution | 1.90 Å |
|
 |
|   |   |
271 | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
T | P | Y | F | N | L | P | A | I | L | V | R | N | I | I | Q | L | L | R | E | G | K | K | V | E | I | I | V | G | D | K | T | A | N | D | F | Y | I | P | E | D | E | P | F | K | I | I | G | A | L | P | Y | L | Y | E | I | N | L | R | R | F | L | S | R | L | Q | Y | Y | V | N | T | D | Q | L | V | V | R |
| Query Conservation |   |
|
|
|
|   |
|   |   |   |
|   |   |
|
|   |   |
|   |   |
|
|
|   |
|   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |
| Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|
|
|
|   | . |   |   |
|   |   |
|   |   |
|
|   |   |   |
|   |   |
|   |
|   |   |
|
|   |   |   |   |   |   |
|   |
|
|
|   |   |   |   |   |
|   |
|
|
|
|
|   |   |   |   |   |
|
|   |   |   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |
| Template Sequence |   |
N | S | R | F | S | E | . |
D | Y | I | H | R | L | I | A | W | A | V | R | E | F | Q | S | V | S | V | L | L | A | G | K | E | A | A | N | L | L | E | A | L | G | T | P | H | G | K | A | E | R | K | V | R | K | E | V | S | R | N | R | R | F | A | E | K | A | L | E | A | H | G | G | N | P | E | D | I | H |
| Template Known Secondary structure |   |
B | T | T |
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S |  |  |  |  |  |  |
|
| T | T |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| T | T |
|  |  |
| Template Predicted Secondary structure |   |
|
|
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
40 | . | . | . | . | . | |
. | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|