Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP37906
DateThu Jan 5 11:57:45 GMT 2012
Unique Job IDa21924ac3c1a3242

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2gahB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit;
PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 89%
380 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTEHTSSYYAASANKYAPFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASR
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Disorder  ???????






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   .........70.........80.........90.........100.........110.........120
Sequence  IGFGASGRNGGQLVNSYSRDIDVIEKSYGMDTARMLGSMMFEGGEIIRERIKRYQIDCDY
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   .........130.........140.........150.........160.........170.........180
Sequence  RPGGLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAIRREVASDRYTGALLDHSGGH
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   .........190.........200.........210.........220.........230.........240
Sequence  IHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVVRTAKGQVTAKYVIVAGNAYLGD
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   .........250.........260.........270.........280.........290.........300
Sequence  KVEPELAKRSMPCGTQVITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGG
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   .........310.........320.........330.........340.........350.........360
Sequence  GVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDYRWTGNFLLTLSRMPQFGRLDTNIYYM
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   .........370.........380.........390.........400.........410.........420
Sequence  QGYSGHGVTCTHLAGRLIAELLRGDAERFDAFANLPHYPFPGGRTLRVPFTAMGAAYYSL
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   ......
Sequence  RDRLGV
Secondary structure 


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Disorder 



??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2gah chain B

3D model

Region: 1 - 413
Aligned: 380
Modelled: 399
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit;
PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution

Phyre2

PDB 1pj6 chain A

3D model

Region: 27 - 419
Aligned: 373
Modelled: 377
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid

Phyre2

PDB 3ps9 chain A

3D model

Region: 12 - 407
Aligned: 375
Modelled: 377
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of mnmc from e. coli

Phyre2

PDB 3pvc chain A

3D model

Region: 10 - 407
Aligned: 380
Modelled: 391
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase, transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of apo mnmc from yersinia pestis

Phyre2

PDB 1y56 chain B

3D model

Region: 24 - 406
Aligned: 360
Modelled: 363
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: B: PDB Molecule:sarcosine oxidase;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii

Phyre2

PDB 3dme chain B

3D model

Region: 26 - 383
Aligned: 341
Modelled: 347
Confidence: 100.0%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141

Phyre2

PDB 3nye chain A

3D model

Region: 25 - 402
Aligned: 358
Modelled: 364
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arginine dehydrogenase;
PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine

Phyre2

PDB 3dje chain A

3D model

Region: 23 - 388
Aligned: 349
Modelled: 364
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase;
PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa

Phyre2

PDB 3bhk chain A

3D model

Region: 25 - 407
Aligned: 367
Modelled: 369
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:monomeric sarcosine oxidase;
PDBTitle: crystal structure of r49k mutant of monomeric sarcosine oxidase2 crystallized in phosphate as precipitant

Phyre2

PDB 2oln chain A

3D model

Region: 27 - 398
Aligned: 357
Modelled: 358
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nikd protein;
PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution

Phyre2

PDB 2uzz chain D

3D model

Region: 27 - 400
Aligned: 352
Modelled: 361
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase;
PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)

Phyre2

PDB 1ryi chain B

3D model

Region: 24 - 399
Aligned: 354
Modelled: 371
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine oxidase;
PDBTitle: structure of glycine oxidase with bound inhibitor glycolate

Phyre2

PDB 2r4j chain A

3D model

Region: 27 - 419
Aligned: 370
Modelled: 381
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap

Phyre2

PDB 2rgo chain A

3D model

Region: 27 - 426
Aligned: 381
Modelled: 388
Confidence: 100.0%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase

Phyre2

PDB 1kif chain E

3D model

Region: 30 - 382
Aligned: 315
Modelled: 339
Confidence: 100.0%
Identity: 16%
PDB header:flavoprotein
Chain: E: PDB Molecule:d-amino acid oxidase;
PDBTitle: d-amino acid oxidase from pig kidney

Phyre2

PDB 2gf3 chain A domain 1

3D model

Region: 25 - 407
Aligned: 273
Modelled: 276
Confidence: 100.0%
Identity: 23%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 2rgh chain A

3D model

Region: 27 - 426
Aligned: 382
Modelled: 386
Confidence: 100.0%
Identity: 12%
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase

Phyre2

PDB 1ryi chain A domain 1

3D model

Region: 24 - 399
Aligned: 270
Modelled: 282
Confidence: 100.0%
Identity: 21%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 1c0i chain A

3D model

Region: 24 - 384
Aligned: 320
Modelled: 357
Confidence: 100.0%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-amino acid oxidase;
PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules

Phyre2

PDB 3da1 chain A

3D model

Region: 25 - 383
Aligned: 303
Modelled: 310
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.

Phyre2
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c2gahB_
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c1pj6A_
3

c3ps9A_
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c3pvcA_
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c1y56B_
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c3dmeB_
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c3nyeA_
8

c3djeA_
9

c3bhkA_
10

c2olnA_
11

c2uzzD_
12

c1ryiB_
13

c2r4jA_
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c2rgoA_
15

c1kifE_
16

d2gf3a1
17

c2rghA_
18

d1ryia1
19

c1c0iA_
20

c3da1A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2gahB_



100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit;
PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution
2c1pj6A_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
3c3ps9A_



100.0 18 PDB header:transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of mnmc from e. coli
4c3pvcA_



100.0 17 PDB header:oxidoreductase, transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of apo mnmc from yersinia pestis
5c1y56B_



100.0 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:sarcosine oxidase;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
6c3dmeB_



100.0 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141
7c3nyeA_



100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arginine dehydrogenase;
PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine
8c3djeA_



100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase;
PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa
9c3bhkA_



100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:monomeric sarcosine oxidase;
PDBTitle: crystal structure of r49k mutant of monomeric sarcosine oxidase2 crystallized in phosphate as precipitant
10c2olnA_



100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:nikd protein;
PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution
11c2uzzD_



100.0 17 PDB header:oxidoreductase
Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase;
PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)
12c1ryiB_



100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine oxidase;
PDBTitle: structure of glycine oxidase with bound inhibitor glycolate
13c2r4jA_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap
14c2rgoA_



100.0 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
15c1kifE_



100.0 16 PDB header:flavoprotein
Chain: E: PDB Molecule:d-amino acid oxidase;
PDBTitle: d-amino acid oxidase from pig kidney
16d2gf3a1



100.0 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
17c2rghA_



100.0 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
18d1ryia1



100.0 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
19c1c0iA_



100.0 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-amino acid oxidase;
PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules
20c3da1A_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.
21d1pj5a2



not modelled 99.9 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
22d1c0pa1



not modelled 99.9 16 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:D-aminoacid oxidase, N-terminal domain
23d1kifa1



not modelled 99.8 18 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:D-aminoacid oxidase, N-terminal domain
24c1ltxR_



not modelled 99.8 17 PDB header:transferase/protein binding
Chain: R: PDB Molecule:rab escort protein 1;
PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
25c3i6dA_



not modelled 99.7 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: crystal structure of ppo from bacillus subtilis with af
26c3atrA_



not modelled 99.7 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:conserved archaeal protein;
PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand
27c3cgvA_



not modelled 99.7 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:geranylgeranyl reductase related protein;
PDBTitle: crystal structure of geranylgeranyl bacteriochlorophyll reductase-like2 fixc homolog (np_393992.1) from thermoplasma acidophilum at 1.60 a3 resolution
28c3i3lA_



not modelled 99.7 19 PDB header:hydrolase
Chain: A: PDB Molecule:alkylhalidase cmls;
PDBTitle: crystal structure of cmls, a flavin-dependent halogenase
29c3e1tA_



not modelled 99.7 14 PDB header:flavoprotein
Chain: A: PDB Molecule:halogenase;
PDBTitle: structure and action of the myxobacterial chondrochloren2 halogenase cndh, a new variant of fad-dependent halogenases
30c2weuD_



not modelled 99.7 14 PDB header:antifungal protein
Chain: D: PDB Molecule:tryptophan 5-halogenase;
PDBTitle: crystal structure of tryptophan 5-halogenase (pyrh) complex2 with substrate tryptophan
31c2ardA_



not modelled 99.7 11 PDB header:biosynthetic protein
Chain: A: PDB Molecule:tryptophan halogenase prna;
PDBTitle: the structure of tryptophan 7-halogenase (prna) suggests a mechanism2 for regioselective chlorination
32c2qa2A_



not modelled 99.7 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:polyketide oxygenase cabe;
PDBTitle: crystal structure of cabe, an aromatic hydroxylase from angucycline2 biosynthesis, determined to 2.7 a resolution
33c3ka7A_



not modelled 99.7 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208
34c3nixF_



not modelled 99.6 17 PDB header:oxidoreductase
Chain: F: PDB Molecule:flavoprotein/dehydrogenase;
PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43.
35c1yq4A_



not modelled 99.6 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone
36d2gqfa1



not modelled 99.6 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
37c2e4gB_



not modelled 99.6 13 PDB header:biosynthetic protein, flavoprotein
Chain: B: PDB Molecule:tryptophan halogenase;
PDBTitle: rebh with bound l-trp
38d1o5wa1



not modelled 99.6 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
39c2pyxA_



not modelled 99.6 11 PDB header:biosynthetic protein
Chain: A: PDB Molecule:tryptophan halogenase;
PDBTitle: crystal structure of tryptophan halogenase (yp_750003.1) from2 shewanella frigidimarina ncimb 400 at 1.50 a resolution
40c2aczA_



not modelled 99.6 13 PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site
41c2dkhA_



not modelled 99.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of 3-hydroxybenzoate hydroxylase from comamonas2 testosteroni, in complex with the substrate
42c2vvlD_



not modelled 99.6 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:monoamine oxidase n;
PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger.
43c1phhA_



not modelled 99.6 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:p-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of p-hydroxybenzoate hydroxylase complexed with its2 reaction product 3,4-dihydroxybenzoate
44c2gmhA_



not modelled 99.6 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
45c2bs3A_



not modelled 99.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a;
PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes
46d1y0pa2



not modelled 99.6 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
47c2ivdA_



not modelled 99.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: structure of protoporphyrinogen oxidase from myxococcus2 xanthus with acifluorfen
48c3ihgA_



not modelled 99.6 15 PDB header:flavoprotein, oxidoreductase
Chain: A: PDB Molecule:rdme;
PDBTitle: crystal structure of a ternary complex of aklavinone-112 hydroxylase with fad and aklavinone
49d2i0za1



not modelled 99.6 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
50d1qo8a2



not modelled 99.5 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
51c1qo8A_



not modelled 99.5 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase;
PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
52c3fmwC_



not modelled 99.5 17 PDB header:oxidoreductase
Chain: C: PDB Molecule:oxygenase;
PDBTitle: the crystal structure of mtmoiv, a baeyer-villiger2 monooxygenase from the mithramycin biosynthetic pathway in3 streptomyces argillaceus.
53d1neka2



not modelled 99.5 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
54c1jrxA_



not modelled 99.5 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
55d2bs2a2



not modelled 99.5 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
56c1pn0A_



not modelled 99.5 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:phenol 2-monooxygenase;
PDBTitle: phenol hydroxylase from trichosporon cutaneum
57c1s3bB_



not modelled 99.5 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase [flavin-containing] b;
PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
58d1kf6a2



not modelled 99.5 13 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
59c3k7tB_



not modelled 99.5 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:6-hydroxy-l-nicotine oxidase;
PDBTitle: crystal structure of apo-form 6-hydroxy-l-nicotine oxidase,2 crystal form p3121
60c1d4cB_



not modelled 99.5 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:flavocytochrome c fumarate reductase;
PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1
61c3lovA_



not modelled 99.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: crystal structure of putative protoporphyrinogen oxidase2 (yp_001813199.1) from exiguobacterium sp. 255-15 at 2.06 a resolution
62c3p4rM_



not modelled 99.5 14 PDB header:oxidoreductase
Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit;
PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate
63d2gmha1



not modelled 99.5 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
64c1kf6A_



not modelled 99.4 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase flavoprotein;
PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno
65c1yvvB_



not modelled 99.4 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase, flavin-containing;
PDBTitle: x-ray structurure of p. syringae q888a4 oxidoreductase at2 resolution 2.5a. northeast structural genomics consortium3 target psr10.
66c3nrnA_



not modelled 99.4 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pf1083;
PDBTitle: crystal structure of pf1083 protein from pyrococcus furiosus,2 northeast structural genomics consortium target pfr223
67c3gmbB_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid
PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic2 acid oxygenase
68c3nksA_



not modelled 99.4 16 PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: structure of human protoporphyrinogen ix oxidase
69c3allA_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase;
PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a
70d1d4ca2



not modelled 99.4 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
71c2r0gB_



not modelled 99.4 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:rebc;
PDBTitle: chromopyrrolic acid-soaked rebc with bound 7-carboxy-k252c
72c2x3nA_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable fad-dependent monooxygenase;
PDBTitle: crystal structure of pqsl, a probable fad-dependent2 monooxygenase from pseudomonas aeruginosa
73c2zxiC_



not modelled 99.3 22 PDB header:fad-binding protein
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: structure of aquifex aeolicus gida in the form ii crystal
74c2xdoC_



not modelled 99.3 15 PDB header:oxidoreductase
Chain: C: PDB Molecule:tetx2 protein;
PDBTitle: structure of the tetracycline degrading monooxygenase tetx2 from2 bacteroides thetaiotaomicron
75c3g05B_



not modelled 99.3 24 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
76c2b9yA_



not modelled 99.3 15 PDB header:isomerase
Chain: A: PDB Molecule:putative aminooxidase;
PDBTitle: crystal structure of cla-producing fatty acid isomerase2 from p. acnes
77c3cesB_



not modelled 99.3 24 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
78c3c4aA_



not modelled 99.3 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable tryptophan hydroxylase viod;
PDBTitle: crystal structure of viod hydroxylase in complex with fad2 from chromobacterium violaceum. northeast structural3 genomics consortium target cvr158
79c3v76A_



not modelled 99.3 18 PDB header:flavoprotein
Chain: A: PDB Molecule:flavoprotein;
PDBTitle: the crystal structure of a flavoprotein from sinorhizobium meliloti
80c2fjaC_



not modelled 99.3 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:adenylylsulfate reductase, subunit a;
PDBTitle: adenosine 5'-phosphosulfate reductase in complex with2 substrate
81c3gyxA_



not modelled 99.3 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
82c1h83A_



not modelled 99.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:polyamine oxidase;
PDBTitle: structure of polyamine oxidase in complex with2 1,8-diaminooctane
83c3cp8C_



not modelled 99.3 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: crystal structure of gida from chlorobium tepidum
84c2e5vA_



not modelled 99.3 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate oxidase;
PDBTitle: crystal structure of l-aspartate oxidase from2 hyperthermophilic archaeon sulfolobus tokodaii
85c3jskN_



not modelled 99.3 18 PDB header:biosynthetic protein
Chain: N: PDB Molecule:cypbp37 protein;
PDBTitle: thiazole synthase from neurospora crassa
86d1rp0a1



not modelled 99.2 19 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Thi4-like
87c2i0zA_



not modelled 99.2 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(fad)-utilizing dehydrogenases;
PDBTitle: crystal structure of a fad binding protein from bacillus2 cereus, a putative nad(fad)-utilizing dehydrogenases
88c3nlcA_



not modelled 99.2 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein vp0956;
PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147
89d1chua2



not modelled 99.2 22 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
90c1x31A_



not modelled 99.2 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
91d1d5ta1



not modelled 99.2 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
92c2yg4B_



not modelled 99.2 37 PDB header:oxidoreductase
Chain: B: PDB Molecule:putrescine oxidase;
PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine
93c2rgjA_



not modelled 99.2 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-containing monooxygenase;
PDBTitle: crystal structure of flavin-containing monooxygenase phzs
94d1jnra2



not modelled 99.2 24 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
95d2bcgg1



not modelled 99.2 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
96c3rhaA_



not modelled 99.2 40 PDB header:oxidoreductase
Chain: A: PDB Molecule:putrescine oxidase;
PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens
97c2vouA_



not modelled 99.2 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,6-dihydroxypyridine hydroxylase;
PDBTitle: structure of 2,6-dihydroxypyridine-3-hydroxylase from2 arthrobacter nicotinovorans
98d1vg0a1



not modelled 99.2 22 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
99d3coxa1



not modelled 99.2 25 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
100d1k0ia1



not modelled 99.2 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
101c3hdqI_



not modelled 99.2 29 PDB header:isomerase
Chain: I: PDB Molecule:udp-galactopyranose mutase;
PDBTitle: crystal structure of udp-galactopyranose mutase (oxidized2 form) in complex with substrate
102c2gewA_



not modelled 99.2 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:cholesterol oxidase;
PDBTitle: atomic resolution structure of cholesterol oxidase @ ph 9.02 (streptomyces sp. sa-coo)
103c3ihmB_



not modelled 99.2 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:styrene monooxygenase a;
PDBTitle: structure of the oxygenase component of a pseudomonas styrene2 monooxygenase
104c2q7vA_



not modelled 99.1 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of deinococcus radiodurans thioredoxin2 reductase
105c3cpiH_



not modelled 99.1 22 PDB header:protein transport
Chain: H: PDB Molecule:rab gdp-dissociation inhibitor;
PDBTitle: crystal structure of yeast rab-gdi
106d2v5za1



not modelled 99.1 46 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
107c2bryA_



not modelled 99.1 24 PDB header:transport
Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology
PDBTitle: crystal structure of the native monooxygenase domain of2 mical at 1.45 a resolution
108c1chuA_



not modelled 99.1 23 PDB header:flavoenzyme
Chain: A: PDB Molecule:protein (l-aspartate oxidase);
PDBTitle: structure of l-aspartate oxidase: implications for the2 succinate dehydrogenase/ fumarate reducatse family
109c1i8tB_



not modelled 99.1 30 PDB header:isomerase
Chain: B: PDB Molecule:udp-galactopyranose mutase;
PDBTitle: strcuture of udp-galactopyranose mutase from e.coli
110c1gndA_



not modelled 99.1 23 PDB header:gtpase activation
Chain: A: PDB Molecule:guanine nucleotide dissociation inhibitor;
PDBTitle: guanine nucleotide dissociation inhibitor, alpha-isoform
111c1zmcG_



not modelled 99.1 34 PDB header:oxidoreductase
Chain: G: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 complexed to nad+
112d2dw4a2



not modelled 99.1 36 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
113c3o0hA_



not modelled 99.1 33 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase from bartonella henselae
114c1v0jB_



not modelled 99.1 34 PDB header:isomerase
Chain: B: PDB Molecule:udp-galactopyranose mutase;
PDBTitle: udp-galactopyranose mutase from mycobacterium tuberculosis
115c3ctyA_



not modelled 99.1 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of t. acidophilum thioredoxin reductase
116c3fbsB_



not modelled 99.1 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of the oxidoreductase from agrobacterium2 tumefaciens
117c1hyuA_



not modelled 99.1 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf
118d2cula1



not modelled 99.1 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GidA-like
119c3bnuA_



not modelled 99.1 33 PDB header:oxidoreductase
Chain: A: PDB Molecule:polyamine oxidase fms1;
PDBTitle: crystal structure of polyamine oxidase fms1 from2 saccharomyces cerevisiae in complex with bis-(3s,3's)-3 methylated spermine
120c1f6mF_



not modelled 99.0 18 PDB header:oxidoreductase
Chain: F: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0