Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	L	S	A	T	Q	P	L	S	E	K	L	P	A	H	G	C	R	H	V	A	I	I	M	D	G	N	G	R	W	A	K	K	Q	G	K	I	R	A	F	G	H	K	A	G	A	K	S	V	R	R	A	V	S	F	A	A	N	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?						?		?	?																			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	I	E	A	L	T	L	Y	A	F	S	S	E	N	W	N	R	P	A	Q	E	V	S	A	L	M	E	L	F	V	W	A	L	D	S	E	V	K	S	L	H	R	H	N	V	R	L	R	I	I	G	D	T	S	R	F	N	S	R	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	E	R	I	R	K	S	E	A	L	T	A	G	N	T	G	L	T	L	N	I	A	A	N	Y	G	G	R	W	D	I	V	Q	G	V	R	Q	L	A	E	K	V	Q	Q	G	N	L	Q	P	D	Q	I	D	E	E	M	L	N	Q	H
Secondary structure
SS confidence
Disorder																																													?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	C	M	H	E	L	A	P	V	D	L	V	I	R	T	G	G	E	H	R	I	S	N	F	L	L	W	Q	I	A	Y	A	E	L	Y	F	T	D	V	L	W	P	D	F	D	E	Q	D	F	E	G	A	L	N	A	F	A	N	R	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence		R	R	F	G	G	T	E	P	G	D	E	T	A
Secondary structure
SS confidence
Disorder					?			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2vg2 chain C Region: 14 - 246 Aligned: 233 Modelled: 233 Confidence: 100.0% Identity: 41% PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp Phyre2 PDB 1ueh chain A Region: 13 - 240 Aligned: 214 Modelled: 214 Confidence: 100.0% Identity: 97% Fold: Undecaprenyl diphosphate synthase Superfamily: Undecaprenyl diphosphate synthase Family: Undecaprenyl diphosphate synthase Phyre2 PDB 2vfw chain B Region: 16 - 239 Aligned: 222 Modelled: 224 Confidence: 100.0% Identity: 33% PDB header:transferase Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase; PDBTitle: rv1086 native Phyre2 PDB 1jp3 chain A Region: 13 - 240 Aligned: 214 Modelled: 214 Confidence: 100.0% Identity: 95% PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase Phyre2 PDB 1f75 chain A Region: 11 - 239 Aligned: 217 Modelled: 229 Confidence: 100.0% Identity: 38% Fold: Undecaprenyl diphosphate synthase Superfamily: Undecaprenyl diphosphate synthase Family: Undecaprenyl diphosphate synthase Phyre2 PDB 2d2r chain A Region: 18 - 241 Aligned: 213 Modelled: 224 Confidence: 100.0% Identity: 41% PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase Phyre2 PDB 3ugs chain B Region: 16 - 245 Aligned: 207 Modelled: 216 Confidence: 100.0% Identity: 38% PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni Phyre2 PDB 3bdk chain B Region: 29 - 159 Aligned: 130 Modelled: 131 Confidence: 92.3% Identity: 15% PDB header:lyase Chain: B: PDB Molecule:d-mannonate dehydratase; PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue Phyre2 PDB 3cny chain A Region: 29 - 158 Aligned: 130 Modelled: 130 Confidence: 91.4% Identity: 8% PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution Phyre2 PDB 1tz9 chain A Region: 42 - 158 Aligned: 117 Modelled: 117 Confidence: 85.7% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: UxuA-like Phyre2 PDB 2ou4 chain C Region: 43 - 158 Aligned: 116 Modelled: 116 Confidence: 84.2% Identity: 9% PDB header:isomerase Chain: C: PDB Molecule:d-tagatose 3-epimerase; PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii Phyre2 PDB 2hk1 chain D Region: 44 - 158 Aligned: 115 Modelled: 115 Confidence: 84.1% Identity: 12% PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose Phyre2 PDB 2nux chain B Region: 47 - 161 Aligned: 103 Modelled: 115 Confidence: 81.3% Identity: 9% PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution Phyre2 PDB 3dx5 chain A Region: 43 - 158 Aligned: 112 Modelled: 116 Confidence: 79.6% Identity: 13% PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis Phyre2 PDB 3eb2 chain A Region: 47 - 161 Aligned: 102 Modelled: 115 Confidence: 77.4% Identity: 20% PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution Phyre2 PDB 3b4u chain B Region: 47 - 167 Aligned: 108 Modelled: 121 Confidence: 75.9% Identity: 15% PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58 Phyre2 PDB 3flu chain D Region: 47 - 160 Aligned: 101 Modelled: 114 Confidence: 75.3% Identity: 20% PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis Phyre2 PDB 2rfg chain B Region: 47 - 161 Aligned: 102 Modelled: 115 Confidence: 73.9% Identity: 16% PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution Phyre2 PDB 3cqk chain B Region: 36 - 158 Aligned: 119 Modelled: 123 Confidence: 73.5% Identity: 16% PDB header:isomerase Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae; PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate Phyre2 PDB 3d0c chain B Region: 47 - 161 Aligned: 101 Modelled: 115 Confidence: 73.4% Identity: 17% PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution Phyre2 1 c2vg2C_ 2 d1ueha_ 3 c2vfwB_ 4 c1jp3A_ 5 d1f75a_ 6 c2d2rA_ 7 c3ugsB_ 8 c3bdkB_ 9 c3cnyA_ 10 d1tz9a_ 11 c2ou4C_ 12 c2hk1D_ 13 c2nuxB_ 14 c3dx5A_ 15 c3eb2A_ 16 c3b4uB_ 17 c3fluD_ 18 c2rfgB_ 19 c3cqkB_ 20 c3d0cB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vg2C_ 100.0 41 PDB header:transferase Chain: C: PDB Molecule:undecaprenyl pyrophosphate synthetase; PDBTitle: rv2361 with ipp 2 d1ueha_ 100.0 97 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 3 c2vfwB_ 100.0 33 PDB header:transferase Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase; PDBTitle: rv1086 native 4 c1jp3A_ 100.0 95 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase 5 d1f75a_ 100.0 38 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 6 c2d2rA_ 100.0 41 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase 7 c3ugsB_ 100.0 38 PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni 8 c3bdkB_ 92.3 15 PDB header:lyase Chain: B: PDB Molecule:d-mannonate dehydratase; PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue 9 c3cnyA_ 91.4 8 PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution 10 d1tz9a_ 85.7 18 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:UxuA-like 11 c2ou4C_ 84.2 9 PDB header:isomerase Chain: C: PDB Molecule:d-tagatose 3-epimerase; PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii 12 c2hk1D_ 84.1 12 PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose 13 c2nuxB_ 81.3 9 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution 14 c3dx5A_ 79.6 13 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 15 c3eb2A_ 77.4 20 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution 16 c3b4uB_ 75.9 15 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58 17 c3fluD_ 75.3 20 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis 18 c2rfgB_ 73.9 16 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution 19 c3cqkB_ 73.5 16 PDB header:isomerase Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae; PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate 20 c3d0cB_ 73.4 17 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution 21 c3qxbB_ not modelled 72.1 9 PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution 22 c3si9B_ not modelled 70.7 19 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae 23 c2zdsB_ not modelled 66.6 15 PDB header:dna binding protein Chain: B: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2) 24 c3pueA_ not modelled 63.5 16 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 25 c3s5oA_ not modelled 59.4 10 PDB header:lyase Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase, mitochondrial; PDBTitle: crystal structure of human 4-hydroxy-2-oxoglutarate aldolase bound to2 pyruvate 26 c2r8wB_ not modelled 57.4 13 PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 27 c3cprB_ not modelled 56.4 16 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthetase; PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution 28 d1bxba_ not modelled 55.5 9 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 29 c2v9dB_ not modelled 54.9 17 PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 30 c3fkkA_ not modelled 52.6 21 PDB header:lyase Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase; PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase 31 c3kwsB_ not modelled 52.3 3 PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution 32 d1m5wa_ not modelled 51.6 15 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 33 c3qfeB_ not modelled 51.3 13 PDB header:lyase Chain: B: PDB Molecule:putative dihydrodipicolinate synthase family protein; PDBTitle: crystal structures of a putative dihydrodipicolinate synthase family2 protein from coccidioides immitis 34 c3noeA_ not modelled 49.5 17 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa 35 d1xxxa1 not modelled 49.2 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 36 c3n2xB_ not modelled 48.4 18 PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate 37 c3ktcB_ not modelled 46.8 8 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution 38 c2ehhE_ not modelled 46.6 16 PDB header:lyase Chain: E: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 aquifex aeolicus 39 c3h5dD_ not modelled 46.6 13 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: dihydrodipicolinate synthase from drug-resistant streptococcus2 pneumoniae 40 c2vc6A_ not modelled 45.3 18 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of mosa from s. meliloti with pyruvate bound 41 c3bi8A_ not modelled 44.1 12 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum 42 c2r94B_ not modelled 43.7 15 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase; PDBTitle: crystal structure of kd(p)ga from t.tenax 43 c2zvrA_ not modelled 42.9 9 PDB header:isomerase Chain: A: PDB Molecule:uncharacterized protein tm_0416; PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima 44 c2ksnA_ not modelled 41.9 20 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin domain-containing protein 2; PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2 45 d1hl2a_ not modelled 41.9 16 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 46 d1vhua_ not modelled 41.7 15 Fold:Macro domain-like Superfamily:Macro domain-like Family:Macro domain 47 d1i60a_ not modelled 41.6 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 48 d1bxca_ not modelled 39.3 7 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 49 c3daqB_ not modelled 38.9 15 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus 50 d1otha2 not modelled 37.7 21 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 51 c2ejaB_ not modelled 37.6 12 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus 52 d1o5ka_ not modelled 37.5 21 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 53 c3g0sA_ not modelled 36.0 14 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: dihydrodipicolinate synthase from salmonella typhimurium lt2 54 c3na8A_ not modelled 35.9 15 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa 55 c3dz1A_ not modelled 35.7 22 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution 56 c3lciA_ not modelled 34.7 16 PDB header:lyase Chain: A: PDB Molecule:n-acetylneuraminate lyase; PDBTitle: the d-sialic acid aldolase mutant v251w 57 c3bzjA_ not modelled 33.3 17 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 58 c1xhoB_ not modelled 33.2 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:chorismate mutase; PDBTitle: chorismate mutase from clostridium thermocellum cth-682 59 d1xhoa_ not modelled 33.2 19 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 60 c3vh1A_ not modelled 31.8 20 PDB header:metal binding protein Chain: A: PDB Molecule:ubiquitin-like modifier-activating enzyme atg7; PDBTitle: crystal structure of saccharomyces cerevisiae atg7 (1-595) 61 c3gk0H_ not modelled 31.4 15 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 62 d1fnja_ not modelled 31.2 22 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 63 c3q71A_ not modelled 30.9 13 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 14; PDBTitle: human parp14 (artd8) - macro domain 2 in complex with adenosine-5-2 diphosphoribose 64 c3grfA_ not modelled 30.8 15 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: x-ray structure of ornithine transcarbamoylase from giardia2 lamblia 65 d1vk1a_ not modelled 29.8 60 Fold:ParB/Sulfiredoxin Superfamily:ParB/Sulfiredoxin Family:Hypothetical protein PF0380 66 c1ut8B_ not modelled 28.1 8 PDB header:hydrolase Chain: B: PDB Molecule:exodeoxyribonuclease; PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease 67 c2yxgD_ not modelled 27.7 18 PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) 68 d1dbfa_ not modelled 25.6 22 Fold:Bacillus chorismate mutase-like Superfamily:YjgF-like Family:Chorismate mutase 69 c2pfuA_ not modelled 25.6 10 PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli 70 c2f9iC_ not modelled 25.5 16 PDB header:transferase Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 71 c3gzaB_ not modelled 24.6 16 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution 72 d1cmwa2 not modelled 24.5 10 Fold:PIN domain-like Superfamily:PIN domain-like Family:5' to 3' exonuclease catalytic domain 73 d1xkya1 not modelled 23.2 18 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 74 d2f9ya1 not modelled 22.9 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 75 d2a6na1 not modelled 22.7 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 76 c3lmzA_ not modelled 22.5 14 PDB header:isomerase Chain: A: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution 77 c3e96B_ not modelled 22.4 16 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 bacillus clausii 78 c3ngfA_ not modelled 22.3 18 PDB header:isomerase Chain: A: PDB Molecule:ap endonuclease, family 2; PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis 79 d1nw9b_ not modelled 21.7 16 Fold:Caspase-like Superfamily:Caspase-like Family:Caspase catalytic domain 80 c3ju2A_ not modelled 21.6 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 81 d1xima_ not modelled 21.5 21 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 82 c2qtzA_ not modelled 20.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine synthase reductase; PDBTitle: crystal structure of the nadp+-bound fad-containing fnr-like module of2 human methionine synthase reductase 83 c3gqeA_ not modelled 19.4 13 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 3; PDBTitle: crystal structure of macro domain of venezuelan equine encephalitis2 virus 84 c3q6zA_ not modelled 16.3 12 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 14; PDBTitle: human parp14 (artd8)-macro domain 1 in complex with adenosine-5-2 diphosphoribose 85 d1f1ja_ not modelled 16.1 16 Fold:Caspase-like Superfamily:Caspase-like Family:Caspase catalytic domain 86 d1fmta2 not modelled 16.1 17 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 87 d2eyqa6 not modelled 15.9 9 Fold:TRCF domain-like Superfamily:TRCF domain-like Family:TRCF domain 88 d1wsca1 not modelled 15.7 16 Fold:AMMECR1-like Superfamily:AMMECR1-like Family:AMMECR1-like 89 c2bpoA_ not modelled 15.6 9 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 90 c1nmqB_ not modelled 15.6 20 PDB header:apoptosis, hydrolase Chain: B: PDB Molecule:caspase-3; PDBTitle: extendend tethering: in situ assembly of inhibitors 91 c3lerA_ not modelled 15.5 14 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168 92 d1w3ia_ not modelled 15.2 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 93 c2btdA_ not modelled 15.0 23 PDB header:transferase Chain: A: PDB Molecule:pts-dependent dihydroxyacetone kinase; PDBTitle: crystal structure of dhal from e. coli 94 d1bg4a_ not modelled 14.9 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 95 c3eyxB_ not modelled 14.5 36 PDB header:lyase Chain: B: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of carbonic anhydrase nce103 from2 saccharomyces cerevisiae 96 d2pp4a1 not modelled 14.4 13 Fold:TAFH domain-like Superfamily:TAFH domain-like Family:TAFH domain-like 97 d1yvka1 not modelled 14.4 17 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 98 c2x7vA_ not modelled 14.3 16 PDB header:hydrolase Chain: A: PDB Molecule:probable endonuclease 4; PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc 99 d2q02a1 not modelled 13.7 19 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0