Secondary structure and disorder prediction

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Sequence		M	C	I	G	V	P	G	Q	V	L	A	V	G	E	D	I	H	Q	L	A	Q	V	E	V	C	G	I	K	R	D	V	N	I	A	L	I	C	E	G	N	P	A	D	L	L	G	Q	W	V	L	V	H	V	G	F	A	M	S	I	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Sequence		D	E	D	E	A	K	A	T	L	D	A	L	R	Q	M	D	Y	D	I	T	S	A
Secondary structure
SS confidence
Disorder																					?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3d3r chain A Region: 1 - 80 Aligned: 76 Modelled: 79 Confidence: 100.0% Identity: 32% PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 Phyre2 PDB 2ot2 chain A domain 1 Region: 1 - 77 Aligned: 74 Modelled: 77 Confidence: 99.9% Identity: 57% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 3d3r chain A domain 1 Region: 2 - 80 Aligned: 75 Modelled: 79 Confidence: 99.9% Identity: 32% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 2z1c chain A domain 1 Region: 2 - 79 Aligned: 71 Modelled: 78 Confidence: 99.9% Identity: 38% Fold: OB-fold Superfamily: HupF/HypC-like Family: HupF/HypC-like Phyre2 PDB 1rl2 chain A domain 2 Region: 4 - 49 Aligned: 40 Modelled: 46 Confidence: 80.6% Identity: 28% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 2rcn chain A Region: 6 - 54 Aligned: 43 Modelled: 49 Confidence: 67.5% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. Phyre2 PDB 1vqo chain A domain 2 Region: 4 - 50 Aligned: 42 Modelled: 47 Confidence: 66.7% Identity: 24% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 4a2i chain V Region: 6 - 54 Aligned: 43 Modelled: 49 Confidence: 65.4% Identity: 26% PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor Phyre2 PDB 2zjr chain A domain 2 Region: 4 - 50 Aligned: 41 Modelled: 47 Confidence: 56.1% Identity: 34% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1u0l chain B Region: 5 - 51 Aligned: 44 Modelled: 44 Confidence: 55.1% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima Phyre2 PDB 2dgy chain A Region: 7 - 51 Aligned: 44 Modelled: 45 Confidence: 54.3% Identity: 16% PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein Phyre2 PDB 2yv5 chain A Region: 5 - 54 Aligned: 47 Modelled: 50 Confidence: 54.1% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus Phyre2 PDB 3mxn chain B Region: 7 - 59 Aligned: 50 Modelled: 53 Confidence: 53.7% Identity: 18% PDB header:replication Chain: B: PDB Molecule:recq-mediated genome instability protein 2; PDBTitle: crystal structure of the rmi core complex Phyre2 PDB 1g0d chain A Region: 2 - 10 Aligned: 9 Modelled: 9 Confidence: 43.4% Identity: 33% PDB header:transferase Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: crystal structure of red sea bream transglutaminase Phyre2 PDB 1kv3 chain F Region: 2 - 10 Aligned: 9 Modelled: 9 Confidence: 42.5% Identity: 44% PDB header:transferase Chain: F: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: human tissue transglutaminase in gdp bound form Phyre2 PDB 1l9m chain B Region: 2 - 10 Aligned: 9 Modelled: 9 Confidence: 42.3% Identity: 33% PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation Phyre2 PDB 1f13 chain A Region: 2 - 10 Aligned: 9 Modelled: 9 Confidence: 40.0% Identity: 33% PDB header:coagulation factor Chain: A: PDB Molecule:cellular coagulation factor xiii zymogen; PDBTitle: recombinant human cellular coagulation factor xiii Phyre2 PDB 2oqk chain A Region: 7 - 52 Aligned: 38 Modelled: 46 Confidence: 39.7% Identity: 34% PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a Phyre2 PDB 2j01 chain D domain 2 Region: 4 - 58 Aligned: 49 Modelled: 55 Confidence: 37.2% Identity: 27% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 PDB 1ny4 chain A Region: 4 - 50 Aligned: 41 Modelled: 47 Confidence: 35.6% Identity: 17% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: Cold shock DNA-binding domain-like Phyre2 1 c3d3rA_ 2 d2ot2a1 3 d3d3ra1 4 d2z1ca1 5 d1rl2a2 6 c2rcnA_ 7 d1vqoa2 8 c4a2iV_ 9 d2zjra2 10 c1u0lB_ 11 c2dgyA_ 12 c2yv5A_ 13 c3mxnB_ 14 c1g0dA_ 15 c1kv3F_ 16 c1l9mB_ 17 c1f13A_ 18 c2oqkA_ 19 d2j01d2 20 d1ny4a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3d3rA_ 100.0 32 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 2 d2ot2a1 99.9 57 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 3 d3d3ra1 99.9 32 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 4 d2z1ca1 99.9 38 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 5 d1rl2a2 80.6 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 6 c2rcnA_ 67.5 26 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 7 d1vqoa2 66.7 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 8 c4a2iV_ 65.4 26 PDB header:ribosome/hydrolase Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga; PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor 9 d2zjra2 56.1 34 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 10 c1u0lB_ 55.1 18 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 11 c2dgyA_ 54.3 16 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 12 c2yv5A_ 54.1 17 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 13 c3mxnB_ 53.7 18 PDB header:replication Chain: B: PDB Molecule:recq-mediated genome instability protein 2; PDBTitle: crystal structure of the rmi core complex 14 c1g0dA_ 43.4 33 PDB header:transferase Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: crystal structure of red sea bream transglutaminase 15 c1kv3F_ 42.5 44 PDB header:transferase Chain: F: PDB Molecule:protein-glutamine gamma-glutamyltransferase; PDBTitle: human tissue transglutaminase in gdp bound form 16 c1l9mB_ 42.3 33 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 17 c1f13A_ 40.0 33 PDB header:coagulation factor Chain: A: PDB Molecule:cellular coagulation factor xiii zymogen; PDBTitle: recombinant human cellular coagulation factor xiii 18 c2oqkA_ 39.7 34 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 19 d2j01d2 37.2 27 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 20 d1ny4a_ 35.6 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 21 d2qamc2 not modelled 35.4 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 22 d1jt8a_ not modelled 34.9 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 23 d1g0da4 not modelled 33.7 30 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 24 d1d7qa_ not modelled 33.3 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 25 d1njjb1 not modelled 33.1 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 26 d2q3za4 not modelled 32.8 44 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 27 d1ex0a4 not modelled 31.3 30 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 28 c1t9hA_ not modelled 31.2 9 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: the crystal structure of yloq, a circularly permuted gtpase. 29 d1vjja4 not modelled 29.6 30 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 30 c2xzm1_ not modelled 29.1 19 PDB header:ribosome Chain: 1: PDB Molecule:ribosomal protein s28e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 31 d2toda1 not modelled 28.4 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 32 c1rl2A_ not modelled 28.3 17 PDB header:ribosomal protein Chain: A: PDB Molecule:protein (ribosomal protein l2); PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus 33 d1d7ka1 not modelled 27.1 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 34 d1ne3a_ not modelled 26.7 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 35 c1njjC_ not modelled 23.3 33 PDB header:lyase Chain: C: PDB Molecule:ornithine decarboxylase; PDBTitle: crystal structure determination of t. brucei ornithine2 decarboxylase bound to d-ornithine and to g418 36 c3i4oA_ not modelled 22.8 21 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 37 c3fp9E_ not modelled 22.8 24 PDB header:hydrolase Chain: E: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis 38 d1f3ta1 not modelled 22.3 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 39 c2hc8A_ not modelled 22.2 24 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 40 c1oy5B_ not modelled 20.2 22 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus 41 d1u0la1 not modelled 19.7 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 42 d1knwa1 not modelled 19.5 25 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 43 c2qghA_ not modelled 19.5 17 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from helicobacter2 pylori complexed with l-lysine 44 d1t9ha1 not modelled 19.1 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 45 d7odca1 not modelled 18.6 33 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 46 d1oy5a_ not modelled 18.3 22 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 47 c1xniI_ not modelled 17.8 19 PDB header:cell cycle Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1; PDBTitle: tandem tudor domain of 53bp1 48 d1twia1 not modelled 17.8 8 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 49 c2p3eA_ not modelled 16.9 17 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus 50 c1kqsA_ not modelled 16.5 24 PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l2; PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis 51 c2nvaH_ not modelled 15.5 33 PDB header:lyase Chain: H: PDB Molecule:arginine decarboxylase, a207r protein; PDBTitle: the x-ray crystal structure of the paramecium bursaria2 chlorella virus arginine decarboxylase bound to agmatine 52 c1knwA_ not modelled 14.9 25 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase 53 d3pnpa_ not modelled 14.4 22 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 54 c2yxxA_ not modelled 14.3 25 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure analysis of diaminopimelate decarboxylate (lysa) 55 c1yr3A_ not modelled 13.7 15 PDB header:transferase Chain: A: PDB Molecule:xanthosine phosphorylase; PDBTitle: escherichia coli purine nucleoside phosphorylase ii, the2 product of the xapa gene 56 d1p3ha_ not modelled 13.6 28 Fold:GroES-like Superfamily:GroES-like Family:GroES 57 d1p3qq_ not modelled 13.5 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 58 c1w4sA_ not modelled 13.4 38 PDB header:nuclear protein Chain: A: PDB Molecule:polybromo 1 protein; PDBTitle: crystal structure of the proximal bah domain of polybromo 59 d1aono_ not modelled 13.3 24 Fold:GroES-like Superfamily:GroES-like Family:GroES 60 d1cb0a_ not modelled 13.2 11 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 61 d1fr3a_ not modelled 12.9 11 Fold:OB-fold Superfamily:MOP-like Family:Molybdate/tungstate binding protein MOP 62 d2id1a1 not modelled 12.8 27 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Iojap/YbeB-like 63 d1uala_ not modelled 12.7 38 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 64 d2a7ya1 not modelled 12.6 22 Fold:SH3-like barrel Superfamily:Cell growth inhibitor/plasmid maintenance toxic component Family:Rv2302-like 65 c2a7yA_ not modelled 12.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359; PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis 66 d1vmka_ not modelled 12.5 30 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 67 c2akwB_ not modelled 12.0 15 PDB header:ligase Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain; PDBTitle: crystal structure of t.thermophilus phenylalanyl-trna synthetase2 complexed with p-cl-phenylalanine 68 c2pljA_ not modelled 11.7 25 PDB header:lyase Chain: A: PDB Molecule:lysine/ornithine decarboxylase; PDBTitle: crystal structure of lysine/ornithine decarboxylase complexed with2 putrescine from vibrio vulnificus 69 c2k29A_ not modelled 11.5 25 PDB header:transcription Chain: A: PDB Molecule:antitoxin relb; PDBTitle: structure of the dbd domain of e. coli antitoxin relb 70 d1ntga_ not modelled 11.4 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Myf domain 71 d1pqwa_ not modelled 11.3 31 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 72 c3n29A_ not modelled 11.2 8 PDB header:lyase Chain: A: PDB Molecule:carboxynorspermidine decarboxylase; PDBTitle: crystal structure of carboxynorspermidine decarboxylase complexed with2 norspermidine from campylobacter jejuni 73 c3knuD_ not modelled 11.2 33 PDB header:transferase Chain: D: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (guanine-n1)-methyltransferase from2 anaplasma phagocytophilum 74 d1g2oa_ not modelled 11.1 22 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 75 c3upsA_ not modelled 11.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:iojap-like protein; PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis 76 c3quvB_ not modelled 10.9 33 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a trna-guanine-n1-methyltransferase from2 mycobacterium abscessus 77 c3khsB_ not modelled 10.8 26 PDB header:hydrolase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of grouper iridovirus purine nucleoside2 phosphorylase 78 d1v3va2 not modelled 10.8 31 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 79 c2j66A_ not modelled 10.7 45 PDB header:lyase Chain: A: PDB Molecule:btrk; PDBTitle: structural characterisation of btrk decarboxylase from2 butirosin biosynthesis 80 c3ky7A_ not modelled 10.7 21 PDB header:transferase Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: 2.35 angstrom resolution crystal structure of a putative trna2 (guanine-7-)-methyltransferase (trmd) from staphylococcus aureus3 subsp. aureus mrsa252 81 c3e6eC_ not modelled 10.6 15 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from e.faecalis2 complex with cycloserine 82 d2fzwa2 not modelled 10.6 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 83 d1p9pa_ not modelled 10.5 33 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 84 c1ltlE_ not modelled 10.4 22 PDB header:replication Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54); PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum 85 c2equA_ not modelled 10.4 17 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 86 c1tufA_ not modelled 10.4 8 PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of diaminopimelate decarboxylase from m.2 jannaschi 87 c3iefA_ not modelled 10.3 22 PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. 88 c3ggsA_ not modelled 10.2 22 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: human purine nucleoside phosphorylase double mutant e201q,n243d2 complexed with 2-fluoro-2'-deoxyadenosine 89 c3mt1B_ not modelled 10.2 8 PDB header:lyase Chain: B: PDB Molecule:putative carboxynorspermidine decarboxylase protein; PDBTitle: crystal structure of putative carboxynorspermidine decarboxylase2 protein from sinorhizobium meliloti 90 c2p4sA_ not modelled 10.1 19 PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: structure of purine nucleoside phosphorylase from anopheles gambiae in2 complex with dadme-immh 91 d2fsqa1 not modelled 10.0 6 Fold:LigT-like Superfamily:LigT-like Family:Atu0111-like 92 d2hd3a1 not modelled 10.0 33 Fold:OB-fold Superfamily:EutN/CcmL-like Family:EutN/CcmL-like 93 d2qw7a1 not modelled 9.9 24 Fold:OB-fold Superfamily:EutN/CcmL-like Family:EutN/CcmL-like 94 c3oo2A_ not modelled 9.8 16 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col 95 d2soba_ not modelled 9.7 9 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 96 d1ltla_ not modelled 9.6 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA replication initiator (cdc21/cdc54) N-terminal domain 97 d2nn6h1 not modelled 9.5 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 98 c2opkC_ not modelled 9.4 27 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 99 c2zkra_ not modelled 9.4 25 PDB header:ribosomal protein/rna Chain: A: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0