PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3oo2A_

Fold library id	PDB Header	Molecule	Title
c3oo2A_	PDB header: isomerase	Chain: A: PDB Molecule: alanine racemase 1;	PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col

Links to external resources
Added to library: Tue Oct 19 11:34:36 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S D K Y Y R S A Y M N V D L N A V A S N F K V F S T L H P N K T V M A V V K A N A Y G L G S V K V A R H L M E N G A T F F A V A T L D E A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T S
T T
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E L R M H G I T A K I L V L G V L P A K D I D K A I Q H R V A L T V P S K Q W L K E A I K N I S G E Q E K K L W L H I K L D T G M G R L G I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
S
G G G T T
T
S S
S
B
S S
S S B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K D T K T Y Q E V I E I I Q Q Y E Q L V F E G V F T H F A C A D E P G D M T T E Q Y Q R F K D M V N E A I K P E Y I H C Q N S A G S L L M D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T
S S T T S S S S T S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence C Q F C N A I R P G I S L Y G Y Y P S E Y V Q Q K V K V H L K P S V Q L I A N V V Q T K T L Q A G E S V S Y G Y T A T D P T T I A L L P I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G G T
S S
T T
B
B
S S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence Y A D G Y L R I M Q G S F V N V N G H Q C E V I G R V C M D Q T I V K V P D Q V K A G D S V I L I D N H R E S P Q S V E V V A E K Q H T I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T
G G G T T
T T S
S S
T T
T T
S
S S S T T S T T S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . .

Sequence Y E V L C N L S R R L P R I Y H D G D Q R F V T N E L L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	D	K	Y	Y	R	S	A	Y	M	N	V	D	L	N	A	V	A	S	N	F	K	V	F	S	T	L	H	P	N	K	T	V	M	A	V	V	K	A	N	A	Y	G	L	G	S	V	K	V	A	R	H	L	M	E	N	G	A	T	F	F	A	V	A	T	L	D	E	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S																					S	T	T	S												T	T												T	T							S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	L	R	M	H	G	I	T	A	K	I	L	V	L	G	V	L	P	A	K	D	I	D	K	A	I	Q	H	R	V	A	L	T	V	P	S	K	Q	W	L	K	E	A	I	K	N	I	S	G	E	Q	E	K	K	L	W	L	H	I	K	L	D	T	G	M	G	R	L	G	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T			S						S				G	G	G							T	T																	T			S	S			S								B			S	S			S	S	B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	D	T	K	T	Y	Q	E	V	I	E	I	I	Q	Q	Y	E	Q	L	V	F	E	G	V	F	T	H	F	A	C	A	D	E	P	G	D	M	T	T	E	Q	Y	Q	R	F	K	D	M	V	N	E	A	I	K	P	E	Y	I	H	C	Q	N	S	A	G	S	L	L	M	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S												T	T		T	T											S	S	T	T	S	S	S	S															T	S				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	C	Q	F	C	N	A	I	R	P	G	I	S	L	Y	G	Y	Y	P	S	E	Y	V	Q	Q	K	V	K	V	H	L	K	P	S	V	Q	L	I	A	N	V	V	Q	T	K	T	L	Q	A	G	E	S	V	S	Y	G	Y	T	A	T	D	P	T	T	I	A	L	L	P	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T								G	G	G	G	T			S	S																													T	T		B						B		S	S								S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	Y	A	D	G	Y	L	R	I	M	Q	G	S	F	V	N	V	N	G	H	Q	C	E	V	I	G	R	V	C	M	D	Q	T	I	V	K	V	P	D	Q	V	K	A	G	D	S	V	I	L	I	D	N	H	R	E	S	P	Q	S	V	E	V	V	A	E	K	Q	H	T	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	T			G	G	G	T	T						T	T							S				S	S								T	T			T	T								S		S	S	S	T	T	S								T	T	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Sequence	Y	E	V	L	C	N	L	S	R	R	L	P	R	I	Y	H	D	G	D	Q	R	F	V	T	N	E	L	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S							T	T							G	G	G