Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionQ46904
DateThu Jan 5 12:35:41 GMT 2012
Unique Job ID8ab9be47114320a3

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2qa2A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:polyketide oxygenase cabe;
PDBTitle: crystal structure of cabe, an aromatic hydroxylase from angucycline2 biosynthesis, determined to 2.7 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 84%
354 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
418 residues ( 99%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQ
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Disorder  ???
























































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   .........70.........80.........90.........100.........110.........120
Sequence  FHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECI
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   .........130.........140.........150.........160.........170.........180
Sequence  PGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIK
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   .........190.........200.........210.........220.........230.........240
Sequence  EVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQ
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???
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   .........250.........260.........270.........280.........290.........300
Sequence  SRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALR
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Disorder  ??






































?

















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   .........310.........320.........330.........340.........350.........360
Sequence  SCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQH
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?
























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   .........370.........380.........390.........400.........410.........420
Sequence  VPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSL
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Disorder 






?


















?????













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   ...
Sequence  RCL
Secondary structure 

SS confidence 


Disorder  ???
Disorder confidence 


 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2qa2 chain A

3D model

Region: 4 - 383
Aligned: 354
Modelled: 363
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:polyketide oxygenase cabe;
PDBTitle: crystal structure of cabe, an aromatic hydroxylase from angucycline2 biosynthesis, determined to 2.7 a resolution

Phyre2

PDB 2dkh chain A

3D model

Region: 1 - 378
Aligned: 363
Modelled: 366
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of 3-hydroxybenzoate hydroxylase from comamonas2 testosteroni, in complex with the substrate

Phyre2

PDB 3fmw chain C

3D model

Region: 4 - 420
Aligned: 366
Modelled: 378
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: C: PDB Molecule:oxygenase;
PDBTitle: the crystal structure of mtmoiv, a baeyer-villiger2 monooxygenase from the mithramycin biosynthetic pathway in3 streptomyces argillaceus.

Phyre2

PDB 3i3l chain A

3D model

Region: 1 - 350
Aligned: 331
Modelled: 350
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:alkylhalidase cmls;
PDBTitle: crystal structure of cmls, a flavin-dependent halogenase

Phyre2

PDB 3nix chain F

3D model

Region: 5 - 407
Aligned: 383
Modelled: 390
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: F: PDB Molecule:flavoprotein/dehydrogenase;
PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43.

Phyre2

PDB 2gmh chain A

3D model

Region: 3 - 392
Aligned: 380
Modelled: 381
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone

Phyre2

PDB 3ihg chain A

3D model

Region: 1 - 369
Aligned: 351
Modelled: 369
Confidence: 100.0%
Identity: 15%
PDB header:flavoprotein, oxidoreductase
Chain: A: PDB Molecule:rdme;
PDBTitle: crystal structure of a ternary complex of aklavinone-112 hydroxylase with fad and aklavinone

Phyre2

PDB 3e1t chain A

3D model

Region: 2 - 369
Aligned: 354
Modelled: 368
Confidence: 100.0%
Identity: 19%
PDB header:flavoprotein
Chain: A: PDB Molecule:halogenase;
PDBTitle: structure and action of the myxobacterial chondrochloren2 halogenase cndh, a new variant of fad-dependent halogenases

Phyre2

PDB 1pn0 chain A

3D model

Region: 2 - 367
Aligned: 340
Modelled: 349
Confidence: 100.0%
Identity: 12%
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenol 2-monooxygenase;
PDBTitle: phenol hydroxylase from trichosporon cutaneum

Phyre2

PDB 3cgv chain A

3D model

Region: 2 - 403
Aligned: 375
Modelled: 390
Confidence: 100.0%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:geranylgeranyl reductase related protein;
PDBTitle: crystal structure of geranylgeranyl bacteriochlorophyll reductase-like2 fixc homolog (np_393992.1) from thermoplasma acidophilum at 1.60 a3 resolution

Phyre2

PDB 2gmh chain A domain 1

3D model

Region: 1 - 392
Aligned: 304
Modelled: 314
Confidence: 100.0%
Identity: 24%
Fold: FAD/NAD(P)-binding domain
Superfamily: FAD/NAD(P)-binding domain
Family: FAD-linked reductases, N-terminal domain

Phyre2

PDB 3atr chain A

3D model

Region: 4 - 376
Aligned: 354
Modelled: 368
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:conserved archaeal protein;
PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand

Phyre2

PDB 2r0g chain B

3D model

Region: 4 - 367
Aligned: 334
Modelled: 364
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:rebc;
PDBTitle: chromopyrrolic acid-soaked rebc with bound 7-carboxy-k252c

Phyre2

PDB 1phh chain A

3D model

Region: 4 - 401
Aligned: 378
Modelled: 384
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:p-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of p-hydroxybenzoate hydroxylase complexed with its2 reaction product 3,4-dihydroxybenzoate

Phyre2

PDB 3gmb chain B

3D model

Region: 6 - 362
Aligned: 336
Modelled: 348
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid
PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic2 acid oxygenase

Phyre2

PDB 2x3n chain A

3D model

Region: 3 - 374
Aligned: 354
Modelled: 360
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable fad-dependent monooxygenase;
PDBTitle: crystal structure of pqsl, a probable fad-dependent2 monooxygenase from pseudomonas aeruginosa

Phyre2

PDB 3all chain A

3D model

Region: 3 - 368
Aligned: 345
Modelled: 355
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase;
PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a

Phyre2

PDB 2rgj chain A

3D model

Region: 4 - 365
Aligned: 355
Modelled: 361
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-containing monooxygenase;
PDBTitle: crystal structure of flavin-containing monooxygenase phzs

Phyre2

PDB 3c4a chain A

3D model

Region: 7 - 374
Aligned: 337
Modelled: 355
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable tryptophan hydroxylase viod;
PDBTitle: crystal structure of viod hydroxylase in complex with fad2 from chromobacterium violaceum. northeast structural3 genomics consortium target cvr158

Phyre2

PDB 2bry chain A

3D model

Region: 3 - 347
Aligned: 319
Modelled: 325
Confidence: 100.0%
Identity: 15%
PDB header:transport
Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology
PDBTitle: crystal structure of the native monooxygenase domain of2 mical at 1.45 a resolution

Phyre2
1

c2qa2A_
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c2dkhA_
3

c3fmwC_
4

c3i3lA_
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c3nixF_
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c2gmhA_
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c3ihgA_
8

c3e1tA_
9

c1pn0A_
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c3cgvA_
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d2gmha1
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c3atrA_
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c2r0gB_
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c1phhA_
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c3gmbB_
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c2x3nA_
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c3allA_
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c2rgjA_
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c3c4aA_
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c2bryA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qa2A_



100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:polyketide oxygenase cabe;
PDBTitle: crystal structure of cabe, an aromatic hydroxylase from angucycline2 biosynthesis, determined to 2.7 a resolution
2c2dkhA_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of 3-hydroxybenzoate hydroxylase from comamonas2 testosteroni, in complex with the substrate
3c3fmwC_



100.0 19 PDB header:oxidoreductase
Chain: C: PDB Molecule:oxygenase;
PDBTitle: the crystal structure of mtmoiv, a baeyer-villiger2 monooxygenase from the mithramycin biosynthetic pathway in3 streptomyces argillaceus.
4c3i3lA_



100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:alkylhalidase cmls;
PDBTitle: crystal structure of cmls, a flavin-dependent halogenase
5c3nixF_



100.0 16 PDB header:oxidoreductase
Chain: F: PDB Molecule:flavoprotein/dehydrogenase;
PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43.
6c2gmhA_



100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
7c3ihgA_



100.0 15 PDB header:flavoprotein, oxidoreductase
Chain: A: PDB Molecule:rdme;
PDBTitle: crystal structure of a ternary complex of aklavinone-112 hydroxylase with fad and aklavinone
8c3e1tA_



100.0 19 PDB header:flavoprotein
Chain: A: PDB Molecule:halogenase;
PDBTitle: structure and action of the myxobacterial chondrochloren2 halogenase cndh, a new variant of fad-dependent halogenases
9c1pn0A_



100.0 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:phenol 2-monooxygenase;
PDBTitle: phenol hydroxylase from trichosporon cutaneum
10c3cgvA_



100.0 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:geranylgeranyl reductase related protein;
PDBTitle: crystal structure of geranylgeranyl bacteriochlorophyll reductase-like2 fixc homolog (np_393992.1) from thermoplasma acidophilum at 1.60 a3 resolution
11d2gmha1



100.0 24 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
12c3atrA_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:conserved archaeal protein;
PDBTitle: geranylgeranyl reductase (ggr) from sulfolobus acidocaldarius co-2 crystallized with its ligand
13c2r0gB_



100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:rebc;
PDBTitle: chromopyrrolic acid-soaked rebc with bound 7-carboxy-k252c
14c1phhA_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:p-hydroxybenzoate hydroxylase;
PDBTitle: crystal structure of p-hydroxybenzoate hydroxylase complexed with its2 reaction product 3,4-dihydroxybenzoate
15c3gmbB_



100.0 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid
PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic2 acid oxygenase
16c2x3nA_



100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable fad-dependent monooxygenase;
PDBTitle: crystal structure of pqsl, a probable fad-dependent2 monooxygenase from pseudomonas aeruginosa
17c3allA_



100.0 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase;
PDBTitle: crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid2 oxygenase, mutant y270a
18c2rgjA_



100.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-containing monooxygenase;
PDBTitle: crystal structure of flavin-containing monooxygenase phzs
19c3c4aA_



100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable tryptophan hydroxylase viod;
PDBTitle: crystal structure of viod hydroxylase in complex with fad2 from chromobacterium violaceum. northeast structural3 genomics consortium target cvr158
20c2bryA_



100.0 15 PDB header:transport
Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology
PDBTitle: crystal structure of the native monooxygenase domain of2 mical at 1.45 a resolution
21d1k0ia1



not modelled 99.9 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
22c2xdoC_



not modelled 99.9 14 PDB header:oxidoreductase
Chain: C: PDB Molecule:tetx2 protein;
PDBTitle: structure of the tetracycline degrading monooxygenase tetx2 from2 bacteroides thetaiotaomicron
23c2vouA_



not modelled 99.9 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:2,6-dihydroxypyridine hydroxylase;
PDBTitle: structure of 2,6-dihydroxypyridine-3-hydroxylase from2 arthrobacter nicotinovorans
24c3ihmB_



not modelled 99.9 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:styrene monooxygenase a;
PDBTitle: structure of the oxygenase component of a pseudomonas styrene2 monooxygenase
25c2e4gB_



not modelled 99.9 12 PDB header:biosynthetic protein, flavoprotein
Chain: B: PDB Molecule:tryptophan halogenase;
PDBTitle: rebh with bound l-trp
26c2ardA_



not modelled 99.9 12 PDB header:biosynthetic protein
Chain: A: PDB Molecule:tryptophan halogenase prna;
PDBTitle: the structure of tryptophan 7-halogenase (prna) suggests a mechanism2 for regioselective chlorination
27d3c96a1



not modelled 99.9 23 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
28c2pyxA_



not modelled 99.9 16 PDB header:biosynthetic protein
Chain: A: PDB Molecule:tryptophan halogenase;
PDBTitle: crystal structure of tryptophan halogenase (yp_750003.1) from2 shewanella frigidimarina ncimb 400 at 1.50 a resolution
29d1pn0a1



not modelled 99.9 12 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
30c2weuD_



not modelled 99.9 14 PDB header:antifungal protein
Chain: D: PDB Molecule:tryptophan 5-halogenase;
PDBTitle: crystal structure of tryptophan 5-halogenase (pyrh) complex2 with substrate tryptophan
31d2voua1



not modelled 99.9 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
32c1y56B_



not modelled 99.8 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:sarcosine oxidase;
PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
33c3bhkA_



not modelled 99.8 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:monomeric sarcosine oxidase;
PDBTitle: crystal structure of r49k mutant of monomeric sarcosine oxidase2 crystallized in phosphate as precipitant
34c3nyeA_



not modelled 99.8 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arginine dehydrogenase;
PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine
35c3nrnA_



not modelled 99.7 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pf1083;
PDBTitle: crystal structure of pf1083 protein from pyrococcus furiosus,2 northeast structural genomics consortium target pfr223
36c3dmeB_



not modelled 99.7 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141
37c1yvvB_



not modelled 99.7 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase, flavin-containing;
PDBTitle: x-ray structurure of p. syringae q888a4 oxidoreductase at2 resolution 2.5a. northeast structural genomics consortium3 target psr10.
38c2olnA_



not modelled 99.7 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:nikd protein;
PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution
39c2gahB_



not modelled 99.7 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:heterotetrameric sarcosine oxidase beta-subunit;
PDBTitle: heterotetrameric sarcosine: structure of a diflavin2 metaloenzyme at 1.85 a resolution
40c1pj6A_



not modelled 99.7 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
41c1ryiB_



not modelled 99.7 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine oxidase;
PDBTitle: structure of glycine oxidase with bound inhibitor glycolate
42c3da1A_



not modelled 99.7 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.
43c2r4jA_



not modelled 99.7 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap
44c3ps9A_



not modelled 99.7 18 PDB header:transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of mnmc from e. coli
45c3pvcA_



not modelled 99.7 19 PDB header:oxidoreductase, transferase
Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis
PDBTitle: crystal structure of apo mnmc from yersinia pestis
46c3djeA_



not modelled 99.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:fructosyl amine: oxygen oxidoreductase;
PDBTitle: crystal structure of the deglycating enzyme fructosamine2 oxidase from aspergillus fumigatus (amadoriase ii) in3 complex with fsa
47c2rgoA_



not modelled 99.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
48c1c0iA_



not modelled 99.6 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-amino acid oxidase;
PDBTitle: crystal structure of d-amino acid oxidase in complex with2 two anthranylate molecules
49d1qo8a2



not modelled 99.6 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
50c2uzzD_



not modelled 99.6 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase;
PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)
51c3qj4A_



not modelled 99.6 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:renalase;
PDBTitle: crystal structure of human renalase (isoform 1)
52c3ka7A_



not modelled 99.6 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208
53d2bs2a2



not modelled 99.6 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
54d1ryia1



not modelled 99.6 22 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
55c2rghA_



not modelled 99.6 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
56d1d4ca2



not modelled 99.6 24 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
57d2gqfa1



not modelled 99.6 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
58d2gf3a1



not modelled 99.5 25 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
59c3f8rD_



not modelled 99.5 14 PDB header:oxidoreductase
Chain: D: PDB Molecule:thioredoxin reductase (trxb-3);
PDBTitle: crystal structure of sulfolobus solfataricus thioredoxin2 reductase b3 in complex with two nadp molecules
60c3i6dA_



not modelled 99.5 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: crystal structure of ppo from bacillus subtilis with af
61c1s3bB_



not modelled 99.5 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase [flavin-containing] b;
PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
62d1kf6a2



not modelled 99.5 16 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
63c2zxiC_



not modelled 99.5 16 PDB header:fad-binding protein
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: structure of aquifex aeolicus gida in the form ii crystal
64d1neka2



not modelled 99.5 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
65c3fbsB_



not modelled 99.5 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of the oxidoreductase from agrobacterium2 tumefaciens
66c1ltxR_



not modelled 99.5 17 PDB header:transferase/protein binding
Chain: R: PDB Molecule:rab escort protein 1;
PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
67c3g05B_



not modelled 99.5 26 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
68c3cesB_



not modelled 99.5 24 PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
69d1y0pa2



not modelled 99.5 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
70c2zbwA_



not modelled 99.5 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase-like protein from thermus2 thermophilus hb8
71c2gqfA_



not modelled 99.4 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hi0933;
PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd
72c3cp8C_



not modelled 99.4 18 PDB header:oxidoreductase
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: crystal structure of gida from chlorobium tepidum
73c2ivdA_



not modelled 99.4 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase;
PDBTitle: structure of protoporphyrinogen oxidase from myxococcus2 xanthus with acifluorfen
74d1pj5a2



not modelled 99.4 27 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
75c3jskN_



not modelled 99.4 20 PDB header:biosynthetic protein
Chain: N: PDB Molecule:cypbp37 protein;
PDBTitle: thiazole synthase from neurospora crassa
76d1jnra2



not modelled 99.4 17 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
77c1yq4A_



not modelled 99.4 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone
78d2ivda1



not modelled 99.4 26 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
79c1kf6A_



not modelled 99.4 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase flavoprotein;
PDBTitle: e. coli quinol-fumarate reductase with bound inhibitor hqno
80c2bs3A_



not modelled 99.4 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinol-fumarate reductase flavoprotein subunit a;
PDBTitle: glu c180 -> gln variant quinol:fumarate reductase from2 wolinella succinogenes
81c3p4rM_



not modelled 99.4 13 PDB header:oxidoreductase
Chain: M: PDB Molecule:fumarate reductase flavoprotein subunit;
PDBTitle: crystal structure of menaquinol:fumarate oxidoreductase in complex2 with glutarate
82d2i0za1



not modelled 99.4 25 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
83d1w4xa1



not modelled 99.4 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
84d1d5ta1



not modelled 99.4 21 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
85c2yg4B_



not modelled 99.4 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:putrescine oxidase;
PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine
86c3r9uA_



not modelled 99.4 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: thioredoxin-disulfide reductase from campylobacter jejuni.
87c3rhaA_



not modelled 99.4 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:putrescine oxidase;
PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens
88c3ab1B_



not modelled 99.4 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin--nadp reductase;
PDBTitle: crystal structure of ferredoxin nadp+ oxidoreductase
89c3dgzA_



not modelled 99.4 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase 2;
PDBTitle: crystal structure of mouse mitochondrial thioredoxin reductase, c-2 terminal 3-residue truncation
90c3nlcA_



not modelled 99.4 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein vp0956;
PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147
91c2vvlD_



not modelled 99.4 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:monoamine oxidase n;
PDBTitle: the structure of mao-n-d3, a variant of monoamine oxidase2 from aspergillus niger.
92c3lzxB_



not modelled 99.4 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin--nadp reductase 2;
PDBTitle: crystal structure of ferredoxin-nadp+ oxidoreductase from bacillus2 subtilis (form ii)
93c1f6mF_



not modelled 99.4 22 PDB header:oxidoreductase
Chain: F: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of a complex between thioredoxin2 reductase, thioredoxin, and the nadp+ analog, aadp+
94d1rp0a1



not modelled 99.4 20 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Thi4-like
95c3k7tB_



not modelled 99.4 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:6-hydroxy-l-nicotine oxidase;
PDBTitle: crystal structure of apo-form 6-hydroxy-l-nicotine oxidase,2 crystal form p3121
96d2bcgg1



not modelled 99.4 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
97c1f8sA_



not modelled 99.3 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:l-amino acid oxidase;
PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate.
98c1kifE_



not modelled 99.3 14 PDB header:flavoprotein
Chain: E: PDB Molecule:d-amino acid oxidase;
PDBTitle: d-amino acid oxidase from pig kidney
99c1h83A_



not modelled 99.3 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:polyamine oxidase;
PDBTitle: structure of polyamine oxidase in complex with2 1,8-diaminooctane
100c1jrxA_



not modelled 99.3 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
101c1qo8A_



not modelled 99.3 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase;
PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase
102c1sezA_



not modelled 99.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:protoporphyrinogen oxidase, mitochondrial;
PDBTitle: crystal structure of protoporphyrinogen ix oxidase
103c3gwdA_



not modelled 99.3 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:cyclohexanone monooxygenase;
PDBTitle: closed crystal structure of cyclohexanone monooxygenase
104c1vqwB_



not modelled 99.3 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein with similarity to flavin-containing
PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases
105d1o5wa1



not modelled 99.3 15 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
106c2q0lA_



not modelled 99.2 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin reductase;
PDBTitle: helicobacter pylori thioredoxin reductase reduced by sodium dithionite2 in complex with nadp+
107c2aczA_



not modelled 99.2 20 PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site
108c1w4xA_



not modelled 99.2 19 PDB header:oxygenase
Chain: A: PDB Molecule:phenylacetone monooxygenase;
PDBTitle: phenylacetone monooxygenase, a baeyer-villiger2 monooxygenase
109c1d4cB_



not modelled 99.2 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:flavocytochrome c fumarate reductase;
PDBTitle: crystal structure of the uncomplexed form of the2 flavocytochrome c fumarate reductase of shewanella3 putrefaciens strain mr-1
110d2gjca1



not modelled 99.2 18 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Thi4-like
111c2eq7B_



not modelled 99.2 30 PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
112c3o0hA_



not modelled 99.2 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:glutathione reductase;
PDBTitle: crystal structure of glutathione reductase from bartonella henselae
113c1hyuA_



not modelled 99.2 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf
114d2cula1



not modelled 99.2 24 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GidA-like
115d2gv8a1



not modelled 99.2 14 Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
116c1ojtA_



not modelled 99.1 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:surface protein;
PDBTitle: structure of dihydrolipoamide dehydrogenase
117c2i0zA_



not modelled 99.1 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:nad(fad)-utilizing dehydrogenases;
PDBTitle: crystal structure of a fad binding protein from bacillus2 cereus, a putative nad(fad)-utilizing dehydrogenases
118c3v76A_



not modelled 99.1 23 PDB header:flavoprotein
Chain: A: PDB Molecule:flavoprotein;
PDBTitle: the crystal structure of a flavoprotein from sinorhizobium meliloti
119d1kifa1



not modelled 99.1 20 Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:D-aminoacid oxidase, N-terminal domain
120c3urhB_



not modelled 99.1 28 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure of a dihydrolipoamide dehydrogenase from2 sinorhizobium meliloti 1021

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0