Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP39180
DateThu Jan 5 11:58:24 GMT 2012
Unique Job ID84345fea00e2cb4c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3sljA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
Confidence and coverage
Confidence:100.0% Coverage: 28%
287 residues ( 28% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
995 residues ( 96%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGVAVALSLAAVTSLPVLAADIVVHPG
Secondary structure 
















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   .........70.........80.........90.........100.........110.........120
Sequence  ETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQWVQDGGTANKTTVTSGGL
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   .........130.........140.........150.........160.........170.........180
Sequence  QRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNGGEQWMHEGAIATGTVINDKGWQVVKPG
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Disorder 



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   .........190.........200.........210.........220.........230.........240
Sequence  TVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINKNGRQIVRAEGTANTTVVYAGGD
Secondary structure 




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   .........250.........260.........270.........280.........290.........300
Sequence  QTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQIVKNGGVAGNTTVNQKGRLQVDAG
Secondary structure 






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   .........310.........320.........330.........340.........350.........360
Sequence  GTATNVTLKQGGALVTSTAATVTGINRLGAFSVVEGKADNVVLENGGRLDVLTGHTATNT
Secondary structure 




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   .........370.........380.........390.........400.........410.........420
Sequence  RVDDGGTLDVRNGGTATTVSMGNGGVLLADSGAAVSGTRSDGKAFSIGGGQADALMLEKG
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   .........430.........440.........450.........460.........470.........480
Sequence  SSFTLNAGDTATDTTVNGGLFTARGGTLAGTTTLNNGAILTLSGKTVNNDTLTIREGDAL
Secondary structure 



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   .........490.........500.........510.........520.........530.........540
Sequence  LQGGSLTGNGSVEKSGSGTLTVSNTTLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALKL
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   .........550.........560.........570.........580.........590.........600
Sequence  TGSTVLNGAIDPTNVTLASGATWNIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATLK
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   .........610.........620.........630.........640.........650.........660
Sequence  VKNLNGQNGTISLRVRPDMAQNNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQ
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   .........670.........680.........690.........700.........710.........720
Sequence  VVEAINGATTEEGAFVQGNRLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQA
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   .........730.........740.........750.........760.........770.........780
Sequence  MDYDRIVAGSRSHQTGVNGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEG
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   .........790.........800.........810.........820.........830.........840
Sequence  DLMRTEVAGMSVTAGVYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWA
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   .........850.........860.........870.........880.........890.........900
Sequence  DIVAQGTRHSMKASSDNNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDD
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   .........910.........920.........930.........940.........950.........960
Sequence  GKDNAGYVKFGHGSAQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWVQ
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  PSVIRTFSSRGDMRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHS
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?
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   .........1030.........
Sequence  VSGSSAEGYNGQATLNVTF
Secondary structure 







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Disorder  ???????










?
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3slj chain A

3D model

Region: 710 - 1039
Aligned: 287
Modelled: 310
Confidence: 100.0%
Identity: 19%
PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant

Phyre2

PDB 3aeh chain B

3D model

Region: 710 - 1039
Aligned: 260
Modelled: 280
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp

Phyre2

PDB 1uyn chain X

3D model

Region: 715 - 1039
Aligned: 268
Modelled: 288
Confidence: 100.0%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: Autotransporter
Family: Autotransporter

Phyre2

PDB 3qq2 chain C

3D model

Region: 740 - 1039
Aligned: 243
Modelled: 262
Confidence: 100.0%
Identity: 19%
PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka

Phyre2

PDB 2qom chain B

3D model

Region: 730 - 1039
Aligned: 265
Modelled: 286
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.

Phyre2

PDB 3kvn chain A

3D model

Region: 710 - 1039
Aligned: 292
Modelled: 307
Confidence: 100.0%
Identity: 13%
PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa

Phyre2

PDB 1dab chain A

3D model

Region: 172 - 707
Aligned: 526
Modelled: 526
Confidence: 99.5%
Identity: 13%
Fold: Single-stranded right-handed beta-helix
Superfamily: Pectin lyase-like
Family: Virulence factor P.69 pertactin

Phyre2

PDB 3ml3 chain A

3D model

Region: 580 - 703
Aligned: 117
Modelled: 124
Confidence: 99.1%
Identity: 26%
PDB header:protein transport
Chain: A: PDB Molecule:outer membrane protein icsa autotransporter;
PDBTitle: crystal structure of the icsa autochaperone region

Phyre2

PDB 1g90 chain A

3D model

Region: 832 - 1039
Aligned: 165
Modelled: 172
Confidence: 99.0%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2k0l chain A

3D model

Region: 832 - 1039
Aligned: 170
Modelled: 181
Confidence: 98.9%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.

Phyre2

PDB 3h09 chain B

3D model

Region: 11 - 700
Aligned: 665
Modelled: 690
Confidence: 98.8%
Identity: 13%
PDB header:hydrolase
Chain: B: PDB Molecule:immunoglobulin a1 protease;
PDBTitle: the structure of haemophilus influenzae iga1 protease

Phyre2

PDB 3nb3 chain C

3D model

Region: 835 - 1039
Aligned: 133
Modelled: 168
Confidence: 98.8%
Identity: 15%
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

Phyre2

PDB 1p4t chain A

3D model

Region: 833 - 1039
Aligned: 152
Modelled: 186
Confidence: 98.8%
Identity: 19%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 1qjp chain A

3D model

Region: 835 - 1039
Aligned: 133
Modelled: 168
Confidence: 98.6%
Identity: 17%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2

PDB 2jmm chain A

3D model

Region: 835 - 1039
Aligned: 147
Modelled: 184
Confidence: 98.5%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein

Phyre2

PDB 2f1t chain B

3D model

Region: 838 - 1039
Aligned: 165
Modelled: 175
Confidence: 98.4%
Identity: 12%
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw

Phyre2

PDB 2x27 chain X

3D model

Region: 832 - 1039
Aligned: 180
Modelled: 187
Confidence: 98.3%
Identity: 15%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa

Phyre2

PDB 3qra chain A

3D model

Region: 844 - 1039
Aligned: 146
Modelled: 157
Confidence: 98.3%
Identity: 14%
PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis

Phyre2

PDB 2wjq chain A

3D model

Region: 803 - 1039
Aligned: 162
Modelled: 178
Confidence: 97.9%
Identity: 12%
PDB header:transport protein
Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel
PDBTitle: nanc porin structure in hexagonal crystal form.

Phyre2

PDB 1qj8 chain A

3D model

Region: 865 - 1039
Aligned: 130
Modelled: 141
Confidence: 97.7%
Identity: 14%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2
1

c3sljA_
2

c3aehB_
3

d1uynx_
4

c3qq2C_
5

c2qomB_
6

c3kvnA_
7

d1daba_
8

c3ml3A_
9

d1g90a_
10

c2k0lA_
11

c3h09B_
12

c3nb3C_
13

d1p4ta_
14

d1qjpa_
15

c2jmmA_
16

c2f1tB_
17

c2x27X_
18

c3qraA_
19

c2wjqA_
20

d1qj8a_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3sljA_



100.0 19 PDB header:protein transport
Chain: A: PDB Molecule:serine protease espp;
PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
2c3aehB_



100.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter;
PDBTitle: integral membrane domain of autotransporter hbp
3d1uynx_



100.0 13 Fold:Transmembrane beta-barrels
Superfamily:Autotransporter
Family:Autotransporter
4c3qq2C_



100.0 19 PDB header:membrane protein/protein transport
Chain: C: PDB Molecule:brka autotransporter;
PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
5c2qomB_



100.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:serine protease espp;
PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.
6c3kvnA_



100.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:esterase esta;
PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa
7d1daba_



99.5 13 Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Virulence factor P.69 pertactin
8c3ml3A_



99.1 26 PDB header:protein transport
Chain: A: PDB Molecule:outer membrane protein icsa autotransporter;
PDBTitle: crystal structure of the icsa autochaperone region
9d1g90a_



99.0 13 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
10c2k0lA_



98.9 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
11c3h09B_



98.8 13 PDB header:hydrolase
Chain: B: PDB Molecule:immunoglobulin a1 protease;
PDBTitle: the structure of haemophilus influenzae iga1 protease
12c3nb3C_



98.8 15 PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
13d1p4ta_



98.8 19 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
14d1qjpa_



98.6 17 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
15c2jmmA_



98.5 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein
16c2f1tB_



98.4 12 PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw
17c2x27X_



98.3 15 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
18c3qraA_



98.3 14 PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
19c2wjqA_



97.9 12 PDB header:transport protein
Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel
PDBTitle: nanc porin structure in hexagonal crystal form.
20d1qj8a_



97.7 14 Fold:Transmembrane beta-barrels
Superfamily:OMPA-like
Family:Outer membrane protein
21c3syjA_



not modelled 97.6 9 PDB header:cell adhesion
Chain: A: PDB Molecule:adhesion and penetration protein autotransporter;
PDBTitle: crystal structure of the haemophilus influenzae hap adhesin
22c2iwvD_



not modelled 96.9 13 PDB header:ion channel
Chain: D: PDB Molecule:outer membrane protein g;
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
23c2x4mD_



not modelled 96.7 16 PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla
24c3a2rX_



not modelled 96.5 14 PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein ii;
PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis
25c2lhfA_



not modelled 95.8 14 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles
26d1i78a_



not modelled 95.5 14 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane protease OMPT
27d3prna_



not modelled 91.8 15 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
28d2zfga1



not modelled 90.6 5 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
29d1phoa_



not modelled 88.6 9 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
30d2pora_



not modelled 87.8 9 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
31c3brzA_



not modelled 80.7 13 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
32d1t16a_



not modelled 77.4 16 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Outer membrane protein transport protein
33d2fgqx1



not modelled 76.5 11 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
34d1osma_



not modelled 73.9 10 Fold:Transmembrane beta-barrels
Superfamily:Porins
Family:Porin
35c3dwoX_



not modelled 60.7 17 PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
36d1g5aa1



not modelled 53.9 32 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
37c3bryB_



not modelled 49.6 16 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
38d2vdfa1



not modelled 45.2 11 Fold:Transmembrane beta-barrels
Superfamily:OMPT-like
Family:Outer membrane adhesin/invasin OpcA
39c1qd6C_



not modelled 38.3 18 PDB header:membrane protein
Chain: C: PDB Molecule:protein (outer membrane phospholipase (ompla));
PDBTitle: outer membrane phospholipase a from escherichia coli
40d3ulla_



not modelled 37.7 33 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
41c2ihfA_



not modelled 32.7 44 PDB header:dna binding protein
Chain: A: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: crystal structure of deletion mutant delta 228-252 r190a of the2 single-stranded dna binding protein from thermus aquaticus
42c3rbhC_



not modelled 27.7 12 PDB header:transport protein
Chain: C: PDB Molecule:alginate production protein alge;
PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa
43c2ervA_



not modelled 25.4 10 PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein paer03002360;
PDBTitle: crystal structure of the outer membrane enzyme pagl
44c3nsgA_



not modelled 22.8 12 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein f;
PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi
45d1pm6a_



not modelled 18.1 6 Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
46d1wv8a1



not modelled 16.9 22 Fold:TTHA1013/TTHA0281-like
Superfamily:TTHA1013/TTHA0281-like
Family:TTHA1013-like
47d1gxya_



not modelled 16.8 11 Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:Ecto-ART
48c3alzB_



not modelled 14.7 17 PDB header:viral protein/membrane protein
Chain: B: PDB Molecule:cdw150;
PDBTitle: crystal structure of the measles virus hemagglutinin bound to its2 cellular receptor slam (form i)
49c2z5vA_



not modelled 14.1 7 PDB header:immune system
Chain: A: PDB Molecule:myeloid differentiation primary response protein
PDBTitle: solution structure of the tir domain of human myd88
50d2hrva_



not modelled 13.8 17 Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral cysteine protease of trypsin fold
51c1fw3A_



not modelled 13.2 18 PDB header:hydrolase, membrane protein
Chain: A: PDB Molecule:outer membrane phospholipase a;
PDBTitle: outer membrane phospholipase a from escherichia coli
52c3fmfA_



not modelled 12.8 24 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate
53d1nrja_



not modelled 12.2 33 Fold:Profilin-like
Superfamily:SNARE-like
Family:SRP alpha N-terminal domain-like
54c2hw2A_



not modelled 12.2 38 PDB header:transferase
Chain: A: PDB Molecule:rifampin adp-ribosyl transferase;
PDBTitle: crystal structure of rifampin adp-ribosyl transferase in2 complex with rifampin
55d1rh6a_



not modelled 11.2 6 Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
56c2hdiA_



not modelled 10.7 17 PDB header:protein transport,antimicrobial protein
Chain: A: PDB Molecule:colicin i receptor;
PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
57c2wvyA_



not modelled 10.4 25 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt21992 from bacteroides thetaiotaomicron vpi-5482
58c3jtyB_



not modelled 9.9 13 PDB header:transport protein
Chain: B: PDB Molecule:benf-like porin;
PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5
59c2ww1B_



not modelled 9.0 22 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt39902 from bacteroides thetaiotaomicron vpi-5482 in complex with3 thiomannobioside
60c2pe4A_



not modelled 8.8 42 PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase-1;
PDBTitle: structure of human hyaluronidase 1, a hyaluronan hydrolyzing enzyme2 involved in tumor growth and angiogenesis
61d1jmxa4



not modelled 8.3 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5
62c1fdfA_



not modelled 8.3 33 PDB header:signaling protein
Chain: A: PDB Molecule:rhodopsin;
PDBTitle: helix 7 bovine rhodopsin
63d2f15a1



not modelled 8.2 11 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:AMPK-beta glycogen binding domain-like
64c2gr7C_



not modelled 8.1 11 PDB header:membrane protein
Chain: C: PDB Molecule:adhesin;
PDBTitle: hia 992-1098
65d2gr7a1



not modelled 8.1 11 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
66c3fidA_



not modelled 8.0 9 PDB header:membrane protein
Chain: A: PDB Molecule:putative outer membrane protein (lpxr);
PDBTitle: lpxr from salmonella typhimurium
67d1qqga2



not modelled 7.7 10 Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Phosphotyrosine-binding domain (PTB)
68d2gr8a1



not modelled 7.7 11 Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
69c1z8rA_



not modelled 7.5 11 PDB header:hydrolase
Chain: A: PDB Molecule:coxsackievirus b4 polyprotein;
PDBTitle: 2a cysteine proteinase from human coxsackievirus b4 (strain2 jvb / benschoten / new york / 51)
70d1euza2



not modelled 7.3 21 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
71d2gc9a1



not modelled 7.1 31 Fold:Lipocalins
Superfamily:Lipocalins
Family:Phenolic acid decarboxylase (PAD)
72d1bgva2



not modelled 6.9 42 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
73c1ahuB_



not modelled 6.8 18 PDB header:flavoenzyme
Chain: B: PDB Molecule:vanillyl-alcohol oxidase;
PDBTitle: structure of the octameric flavoenzyme vanillyl-alcohol2 oxidase in complex with p-cresol
74d2pi0a1



not modelled 6.8 36 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Interferon regulatory factor
75d1cm7a_



not modelled 6.6 13 Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
76c2dllA_



not modelled 6.5 27 PDB header:cytokine
Chain: A: PDB Molecule:interferon regulatory factor 4;
PDBTitle: solution structure of the irf domain of human interferon2 regulator factors 4
77d1k0ra4



not modelled 6.3 50 Fold:Transcription factor NusA, N-terminal domain
Superfamily:Transcription factor NusA, N-terminal domain
Family:Transcription factor NusA, N-terminal domain
78d1zrua1



not modelled 6.3 13 Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Lactophage receptor-binding protein head domain
79d1tf3a3



not modelled 6.3 36 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
80c2atmA_



not modelled 6.3 27 PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: crystal structure of the recombinant allergen ves v 2
81c1kq8A_



not modelled 6.3 40 PDB header:transcription
Chain: A: PDB Molecule:hepatocyte nuclear factor 3 forkhead homolog 1;
PDBTitle: solution structure of winged helix protein hfh-1
82d1kq8a_



not modelled 6.3 40 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Forkhead DNA-binding domain
83d2zkmx2



not modelled 6.3 13 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
84c3dvkB_



not modelled 6.3 33 PDB header:membrane protein
Chain: B: PDB Molecule:voltage-dependent r-type calcium channel subunit alpha-1e;
PDBTitle: crystal structure of ca2+/cam-cav2.3 iq domain complex
85d1dcea2



not modelled 6.3 29 Fold:C2 domain-like
Superfamily:Rab geranylgeranyltransferase alpha-subunit, insert domain
Family:Rab geranylgeranyltransferase alpha-subunit, insert domain
86d1bvua2



not modelled 6.3 21 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
87c3s2xB_



not modelled 6.2 50 PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha;
PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain
88d1hwxa2



not modelled 6.2 16 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
89d1qvca_



not modelled 6.1 33 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
90d1dwka1



not modelled 6.1 20 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Cyanase N-terminal domain
91c3o7vX_



not modelled 6.1 27 PDB header:rna binding protein/rna
Chain: X: PDB Molecule:piwi-like protein 1;
PDBTitle: crystal structure of human hiwi1 (v361m) paz domain (residues 277-399)2 in complex with 14-mer rna (12-bp + 2-nt overhang) containing 2'-och33 at its 3'-end
92c2ic7A_



not modelled 6.0 9 PDB header:transferase
Chain: A: PDB Molecule:maltose transacetylase;
PDBTitle: crystal structure of maltose transacetylase from2 geobacillus kaustophilus
93c1z1sA_



not modelled 6.0 29 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa3332;
PDBTitle: crystal structure of putative isomerase pa3332 from2 pseudomonas aeruginosa
94c3nadB_



not modelled 5.9 31 PDB header:lyase
Chain: B: PDB Molecule:ferulate decarboxylase;
PDBTitle: crystal structure of phenolic acid decarboxylase from bacillus pumilus2 ui-670
95d1jx4a1



not modelled 5.9 38 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
96c2lakA_



not modelled 5.8 8 PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:ahsa1-like protein rhe_ch02687;
PDBTitle: solution nmr structure of the ahsa1-like protein rhe_ch02687 (1-152)2 from rhizobium etli, northeast structural genomics consortium target3 rer242
97d2irfg_



not modelled 5.8 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Interferon regulatory factor
98c1qqgA_



not modelled 5.8 15 PDB header:signal transduction
Chain: A: PDB Molecule:insulin receptor substrate 1;
PDBTitle: crystal structure of the ph-ptb targeting region of irs-1
99c3qu3A_



not modelled 5.7 36 PDB header:dna binding protein
Chain: A: PDB Molecule:interferon regulatory factor 7;
PDBTitle: crystal structure of irf-7 dbd apo form

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0