Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	Q	F	T	Q	N	T	A	M	P	S	S	L	W	Q	Y	W	R	G	L	S	G	W	N	F	Y	F	L	V	K	F	G	L	L	W	A	G	Y	L	N	F	H	P	L	L	N	L	V	F	A	A	F	L	L	M	P	L	P	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Y	S	L	H	R	L	R	H	W	I	A	L	P	I	G	F	A	L	F	W	H	D	T	W	L	P	G	P	E	S	I	M	S	Q	G	S	Q	V	A	G	F	S	T	D	Y	L	I	D	L	V	T	R	F	I	N	W	Q	M	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	I	F	V	L	L	V	A	W	L	F	L	S	Q	W	I	R	I	T	V	F	V	V	A	I	L	L	W	L	N	V	L	T	L	A	G	P	S	F	S	L	W	P	A	G	Q	P	T	T	T	V	T	T	T	G	G	N	A	A	A
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	V	A	A	T	G	G	A	P	V	V	G	D	M	P	A	Q	T	A	P	P	T	T	A	N	L	N	A	W	L	N	N	F	Y	N	A	E	A	K	R	K	S	T	F	P	S	S	L	P	A	D	A	Q	P	F	E	L	L	V	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?													?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	I	C	S	L	S	W	S	D	I	E	A	A	G	L	M	S	H	P	L	W	S	H	F	D	I	E	F	K	N	F	N	S	A	T	S	Y	S	G	P	A	A	I	R	L	L	R	A	S	C	G	Q	T	S	H	T	N	L	Y	Q
Secondary structure
SS confidence
Disorder																																					?																	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		P	A	N	N	D	C	Y	L	F	D	N	L	S	K	L	G	F	T	Q	H	L	M	M	G	H	N	G	Q	F	G	G	F	L	K	E	V	R	E	N	G	G	M	Q	S	E	L	M	D	Q	T	N	L	P	V	I	L	L	G	F	D
Secondary structure
SS confidence
Disorder																?															?										?	?	?					?	?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		G	S	P	V	Y	D	D	T	A	V	L	N	R	W	L	D	V	T	E	K	D	K	N	S	R	S	A	T	F	Y	N	T	L	P	L	H	D	G	N	H	Y	P	G	V	S	K	T	A	D	Y	K	A	R	A	Q	K	F	F	D	E
Secondary structure
SS confidence
Disorder		?			?															?	?	?	?	?																					?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		L	D	A	F	F	T	E	L	E	K	S	G	R	K	V	M	V	V	V	V	P	E	H	G	G	A	L	K	G	D	R	M	Q	V	S	G	L	R	D	I	P	S	P	S	I	T	D	V	P	V	G	V	K	F	F	G	M	K	A	P
Secondary structure
SS confidence
Disorder																												?	?	?	?		?		?	?	?	?	?																			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		H	Q	G	A	P	I	V	I	E	Q	P	S	S	F	L	A	I	S	D	L	V	V	R	V	L	D	G	K	I	F	T	E	D	N	V	D	W	K	K	L	T	S	G	L	P	Q	T	A	P	V	S	E	N	S	N	A	V	V	I	Q
Secondary structure
SS confidence
Disorder		?	?	?	?																							?	?	?	?	?	?	?	?	?											?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Sequence		Y	Q	D	K	P	Y	V	R	L	N	G	G	D	W	V	P	Y	P	Q
Secondary structure
SS confidence
Disorder				?										?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3lxq chain B Region: 227 - 551 Aligned: 309 Modelled: 325 Confidence: 99.1% Identity: 13% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a Phyre2 PDB 2w8d chain B Region: 237 - 505 Aligned: 259 Modelled: 268 Confidence: 98.9% Identity: 15% PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis Phyre2 PDB 2w5t chain A Region: 202 - 505 Aligned: 290 Modelled: 301 Confidence: 98.6% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. Phyre2 PDB 3ed4 chain A Region: 237 - 557 Aligned: 314 Modelled: 321 Confidence: 98.2% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli Phyre2 PDB 2qzu chain A Region: 237 - 554 Aligned: 310 Modelled: 317 Confidence: 98.2% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 Phyre2 PDB 1auk chain A Region: 237 - 523 Aligned: 280 Modelled: 287 Confidence: 98.0% Identity: 15% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 1fsu chain A Region: 237 - 558 Aligned: 300 Modelled: 304 Confidence: 97.8% Identity: 15% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 2vqr chain A Region: 237 - 557 Aligned: 313 Modelled: 318 Confidence: 97.5% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily Phyre2 PDB 1hdh chain A Region: 237 - 557 Aligned: 313 Modelled: 321 Confidence: 97.4% Identity: 18% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 3b5q chain B Region: 237 - 551 Aligned: 293 Modelled: 297 Confidence: 97.1% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution Phyre2 PDB 1o98 chain A domain 2 Region: 237 - 505 Aligned: 246 Modelled: 266 Confidence: 96.1% Identity: 13% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain Phyre2 PDB 3q3q chain A Region: 230 - 446 Aligned: 217 Modelled: 217 Confidence: 94.8% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 Phyre2 PDB 1p49 chain A Region: 237 - 523 Aligned: 280 Modelled: 280 Confidence: 92.9% Identity: 13% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Arylsulfatase Phyre2 PDB 2xrg chain A Region: 237 - 547 Aligned: 272 Modelled: 272 Confidence: 92.6% Identity: 14% PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor Phyre2 PDB 3szz chain A Region: 237 - 444 Aligned: 197 Modelled: 199 Confidence: 91.8% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:phosphonoacetate hydrolase; PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate Phyre2 PDB 1ei6 chain A Region: 237 - 444 Aligned: 195 Modelled: 195 Confidence: 90.7% Identity: 15% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: Phosphonoacetate hydrolase Phyre2 PDB 2i09 chain A domain 1 Region: 237 - 521 Aligned: 259 Modelled: 285 Confidence: 90.1% Identity: 11% Fold: Alkaline phosphatase-like Superfamily: Alkaline phosphatase-like Family: DeoB catalytic domain-like Phyre2 PDB 2gso chain B Region: 233 - 444 Aligned: 193 Modelled: 193 Confidence: 90.0% Identity: 10% PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate Phyre2 PDB 2i09 chain A Region: 258 - 521 Aligned: 217 Modelled: 243 Confidence: 71.9% Identity: 13% PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans Phyre2 PDB 1esf chain A domain 1 Region: 380 - 402 Aligned: 23 Modelled: 23 Confidence: 71.3% Identity: 26% Fold: OB-fold Superfamily: Bacterial enterotoxins Family: Superantigen toxins, N-terminal domain Phyre2 1 c3lxqB_ 2 c2w8dB_ 3 c2w5tA_ 4 c3ed4A_ 5 c2qzuA_ 6 d1auka_ 7 d1fsua_ 8 c2vqrA_ 9 d1hdha_ 10 c3b5qB_ 11 d1o98a2 12 c3q3qA_ 13 d1p49a_ 14 c2xrgA_ 15 c3szzA_ 16 d1ei6a_ 17 d2i09a1 18 c2gsoB_ 19 c2i09A_ 20 d1esfa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3lxqB_ 99.1 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein vp1736; PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a 2 c2w8dB_ 98.9 15 PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis 3 c2w5tA_ 98.6 14 PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. 4 c3ed4A_ 98.2 15 PDB header:transferase Chain: A: PDB Molecule:arylsulfatase; PDBTitle: crystal structure of putative arylsulfatase from escherichia coli 5 c2qzuA_ 98.2 14 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123 6 d1auka_ 98.0 15 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 7 d1fsua_ 97.8 15 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 8 c2vqrA_ 97.5 20 PDB header:hydrolase Chain: A: PDB Molecule:putative sulfatase; PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily 9 d1hdha_ 97.4 18 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 10 c3b5qB_ 97.1 18 PDB header:hydrolase Chain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution 11 d1o98a2 96.1 13 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain 12 c3q3qA_ 94.8 21 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 13 d1p49a_ 92.9 13 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 14 c2xrgA_ 92.6 14 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor 15 c3szzA_ 91.8 15 PDB header:hydrolase Chain: A: PDB Molecule:phosphonoacetate hydrolase; PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate 16 d1ei6a_ 90.7 15 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Phosphonoacetate hydrolase 17 d2i09a1 90.1 11 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:DeoB catalytic domain-like 18 c2gsoB_ 90.0 10 PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase; PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate 19 c2i09A_ 71.9 13 PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans 20 d1esfa1 71.3 26 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 21 c2xr9A_ not modelled 69.3 16 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) 22 d1qhfa_ not modelled 68.4 25 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 23 c3f3kA_ not modelled 67.9 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ykr043c; PDBTitle: the structure of uncharacterized protein ykr043c from saccharomyces2 cerevisiae. 24 c3c7tB_ not modelled 56.6 21 PDB header:hydrolase Chain: B: PDB Molecule:ecdysteroid-phosphate phosphatase; PDBTitle: crystal structure of the ecdysone phosphate phosphatase, eppase, from2 bombix mori in complex with tungstate 25 c1yjxD_ not modelled 52.5 28 PDB header:isomerase, hydrolase Chain: D: PDB Molecule:phosphoglycerate mutase 1; PDBTitle: crystal structure of human b type phosphoglycerate mutase 26 d2hhja1 not modelled 43.8 18 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 27 d1klud1 not modelled 43.4 24 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 28 d2aq2b1 not modelled 42.2 24 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 29 d1ck1a1 not modelled 41.6 25 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 30 d1xq9a_ not modelled 40.4 23 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 31 c2ikqA_ not modelled 38.4 21 PDB header:signaling protein, immune system Chain: A: PDB Molecule:suppressor of t-cell receptor signaling 1; PDBTitle: crystal structure of mouse sts-1 pgm domain in complex with phosphate 32 c3d4iD_ not modelled 35.4 19 PDB header:hydrolase Chain: D: PDB Molecule:sts-2 protein; PDBTitle: crystal structure of the 2h-phosphatase domain of sts-2 33 d1s0yb_ not modelled 30.3 26 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 34 c3ej9D_ not modelled 29.5 26 PDB header:hydrolase Chain: D: PDB Molecule:beta-subunit of trans-3-chloroacrylic acid dehalogenase; PDBTitle: structural and mechanistic analysis of trans-3-chloroacrylic acid2 dehalogenase activity 35 d1riia_ not modelled 28.7 23 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 36 d1ugpb_ not modelled 27.3 9 Fold:SH3-like barrel Superfamily:Electron transport accessory proteins Family:Nitrile hydratase beta chain 37 c3czpA_ not modelled 27.2 13 PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from pseudomonas2 aeruginosa pa01 38 d1bifa2 not modelled 26.8 24 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain 39 c1bplA_ not modelled 24.6 27 PDB header:glycosyltransferase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: glycosyltransferase 40 d2bvya2 not modelled 24.2 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 41 d1xbta1 not modelled 23.6 32 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Type II thymidine kinase 42 d1e58a_ not modelled 23.5 20 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 43 c3sr2A_ not modelled 23.2 23 PDB header:dna binding protein/protein binding Chain: A: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of human xlf-xrcc4 complex 44 c2bvtB_ not modelled 23.1 17 PDB header:hydrolase Chain: B: PDB Molecule:beta-1,4-mannanase; PDBTitle: the structure of a modular endo-beta-1,4-mannanase from2 cellulomonas fimi explains the product specificity of3 glycoside hydrolase family 26 mannanases. 45 d1ud2a2 not modelled 22.5 23 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 46 d1bxta1 not modelled 22.3 30 Fold:OB-fold Superfamily:Bacterial enterotoxins Family:Superantigen toxins, N-terminal domain 47 c3eznB_ not modelled 22.3 22 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; PDBTitle: crystal structure of phosphoglyceromutase from burkholderia2 pseudomallei 1710b 48 c3mudA_ not modelled 21.8 23 PDB header:contractile protein Chain: A: PDB Molecule:dna repair protein xrcc4, tropomyosin alpha-1 chain; PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle 49 c3k8kB_ not modelled 21.6 27 PDB header:membrane protein Chain: B: PDB Molecule:alpha-amylase, susg; PDBTitle: crystal structure of susg 50 c1cygA_ not modelled 21.1 19 PDB header:glycosyltransferase Chain: A: PDB Molecule:cyclodextrin glucanotransferase; PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase) 51 c3ll4B_ not modelled 20.7 19 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein ykr043c; PDBTitle: structure of the h13a mutant of ykr043c in complex with fructose-1,6-2 bisphosphate 52 c1jd7A_ not modelled 18.8 12 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase 53 c1k6mA_ not modelled 18.6 24 PDB header:transferase, hydrolase Chain: A: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of human liver 6-phosphofructo-2-2 kinase/fructose-2,6-bisphosphatase 54 c1tcmB_ not modelled 18.3 15 PDB header:glycosyltransferase Chain: B: PDB Molecule:cyclodextrin glycosyltransferase; PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251 55 d1mxga2 not modelled 18.2 28 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 56 d1gjwa2 not modelled 17.9 23 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 57 d1ob0a2 not modelled 17.6 27 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 58 c3qz9D_ not modelled 17.4 7 PDB header:lyase Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit; PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida. 59 c1mwoA_ not modelled 17.4 31 PDB header:hydrolase Chain: A: PDB Molecule:alpha amylase; PDBTitle: crystal structure analysis of the hyperthermostable2 pyrocoocus woesei alpha-amylase 60 c2wskA_ not modelled 17.2 29 PDB header:hydrolase Chain: A: PDB Molecule:glycogen debranching enzyme; PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12 61 c3rgiA_ not modelled 16.3 15 PDB header:transferase Chain: A: PDB Molecule:disd protein; PDBTitle: trans-acting transferase from disorazole synthase 62 c1jaeA_ not modelled 16.1 15 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: structure of tenebrio molitor larval alpha-amylase 63 c1qhoA_ not modelled 16.0 31 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex 64 c2qpuB_ not modelled 15.8 24 PDB header:hydrolase Chain: B: PDB Molecule:alpha-amylase type a isozyme; PDBTitle: sugar tongs mutant s378p in complex with acarbose 65 d2fhfa5 not modelled 15.8 21 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 66 c3k25B_ not modelled 15.7 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1438 protein; PDBTitle: crystal structure of slr1438 protein from synechocystis sp. pcc 6803,2 northeast structural genomics consortium target sgr112 67 c3d8hB_ not modelled 15.5 19 PDB header:isomerase Chain: B: PDB Molecule:glycolytic phosphoglycerate mutase; PDBTitle: crystal structure of phosphoglycerate mutase from cryptosporidium2 parvum, cgd7_4270 68 d1avaa2 not modelled 15.4 23 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 69 d3pgma_ not modelled 15.1 24 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Cofactor-dependent phosphoglycerate mutase 70 c1jdaA_ not modelled 14.9 35 PDB header:hydrolase Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase; PDBTitle: maltotetraose-forming exo-amylase 71 d1hvxa2 not modelled 14.6 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 72 d1q6za1 not modelled 14.6 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 73 c1bf2A_ not modelled 14.4 31 PDB header:hydrolase Chain: A: PDB Molecule:isoamylase; PDBTitle: structure of pseudomonas isoamylase 74 d1cyga4 not modelled 14.2 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 75 c3bmwA_ not modelled 13.9 19 PDB header:transferase Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase; PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor 76 c2ya0A_ not modelled 13.9 25 PDB header:hydrolase Chain: A: PDB Molecule:putative alkaline amylopullulanase; PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua 77 c3bv6D_ not modelled 13.7 14 PDB header:hydrolase Chain: D: PDB Molecule:metal-dependent hydrolase; PDBTitle: crystal structure of uncharacterized metallo protein from vibrio2 cholerae with beta-lactamase like fold 78 c2i1vB_ not modelled 13.6 32 PDB header:transferase, hydrolase Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate 79 c2aaaA_ not modelled 13.6 38 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus 80 d2gjpa2 not modelled 13.5 27 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 81 c3faxA_ not modelled 13.5 31 PDB header:hydrolase Chain: A: PDB Molecule:reticulocyte binding protein; PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose 82 d2btya1 not modelled 13.5 31 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 83 c2wcsA_ not modelled 13.4 14 PDB header:hydrolase Chain: A: PDB Molecule:alpha amylase, catalytic region; PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde) 84 c3blpX_ not modelled 13.2 27 PDB header:hydrolase Chain: X: PDB Molecule:alpha-amylase 1; PDBTitle: role of aromatic residues in human salivary alpha-amylase 85 d3bmva4 not modelled 13.0 17 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 86 c3q4fG_ not modelled 12.9 23 PDB header:dna binding protein/protein binding Chain: G: PDB Molecule:dna repair protein xrcc4; PDBTitle: crystal structure of xrcc4/xlf-cernunnos complex 87 c2b78A_ not modelled 12.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein smu.776; PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans 88 d1iv8a2 not modelled 12.3 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 89 d2io8a1 not modelled 12.2 24 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Glutathionylspermidine synthase substrate-binding domain-like 90 d1e43a2 not modelled 12.0 27 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 91 d3bzka5 not modelled 11.8 37 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Tex RuvX-like domain-like 92 c1w4rC_ not modelled 11.8 40 PDB header:transferase Chain: C: PDB Molecule:thymidine kinase; PDBTitle: structure of a type ii thymidine kinase with bound dttp 93 d2bhua3 not modelled 11.8 27 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 94 c3dhuC_ not modelled 11.7 24 PDB header:hydrolase Chain: C: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum 95 c3m07A_ not modelled 11.7 29 PDB header:unknown function Chain: A: PDB Molecule:putative alpha amylase; PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium. 96 d1k6ma2 not modelled 11.5 21 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain 97 d1m7xa3 not modelled 11.5 27 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 98 c1o7dC_ not modelled 11.5 23 PDB header:hydrolase Chain: C: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation 99 c3rhfB_ not modelled 11.4 25 PDB header:transferase Chain: B: PDB Molecule:putative polyphosphate kinase 2 family protein; PDBTitle: crystal structure of polyphosphate kinase 2 from arthrobacter2 aurescens tc1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0