Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	T	K	V	I	L	S	Q	Q	M	A	S	A	I	I	A	A	G	Q	E	E	A	Q	K	N	N	W	S	V	S	I	A	V	A	D	D	G	G	H	L	L	A	L	S	R	M	D	D	C	A	P	I	A	A	Y	I	S	Q	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	A	R	T	A	A	L	G	R	R	E	T	K	G	Y	E	E	M	V	N	N	G	R	T	A	F	V	T	A	P	L	L	T	S	L	E	G	G	V	P	V	V	V	D	G	Q	I	I	G	A	V	G	V	S	G	L	T	G	A	Q
Secondary structure
SS confidence
Disorder												?								?			?	?		?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.
Sequence		D	A	Q	V	A	K	A	A	A	A	V	L	A	K
Secondary structure
SS confidence
Disorder														?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2a2l chain A domain 1 Region: 1 - 133 Aligned: 133 Modelled: 133 Confidence: 100.0% Identity: 31% Fold: Profilin-like Superfamily: GlcG-like Family: GlcG-like Phyre2 PDB 3fpv chain C Region: 1 - 132 Aligned: 131 Modelled: 132 Confidence: 100.0% Identity: 31% PDB header:heme binding protein Chain: C: PDB Molecule:extracellular haem-binding protein; PDBTitle: crystal structure of hbps Phyre2 PDB 1ysq chain A Region: 8 - 134 Aligned: 121 Modelled: 125 Confidence: 92.3% Identity: 12% PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj; PDBTitle: the crystal structure of transcriptional regulator yaij Phyre2 PDB 2o9a chain A domain 1 Region: 6 - 134 Aligned: 126 Modelled: 129 Confidence: 88.8% Identity: 13% Fold: Profilin-like Superfamily: GAF domain-like Family: IclR ligand-binding domain-like Phyre2 PDB 1ysp chain A Region: 9 - 134 Aligned: 122 Modelled: 126 Confidence: 85.8% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator kdgr; PDBTitle: crystal structure of the c-terminal domain of e. coli transcriptional2 regulator kdgr. Phyre2 PDB 1tf1 chain A Region: 8 - 134 Aligned: 123 Modelled: 127 Confidence: 83.9% Identity: 10% Fold: Profilin-like Superfamily: GAF domain-like Family: IclR ligand-binding domain-like Phyre2 PDB 2w1r chain A Region: 99 - 133 Aligned: 35 Modelled: 35 Confidence: 78.7% Identity: 37% PDB header:transcription Chain: A: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of the c-terminal domain of b. subtilis2 spovt Phyre2 PDB 1mkm chain A domain 2 Region: 10 - 133 Aligned: 123 Modelled: 124 Confidence: 74.0% Identity: 17% Fold: Profilin-like Superfamily: GAF domain-like Family: IclR ligand-binding domain-like Phyre2 PDB 1mkm chain A Region: 11 - 134 Aligned: 123 Modelled: 124 Confidence: 71.1% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator; PDBTitle: crystal structure of the thermotoga maritima iclr Phyre2 PDB 2g7u chain B Region: 8 - 134 Aligned: 126 Modelled: 127 Confidence: 69.8% Identity: 22% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1 Phyre2 PDB 3bjn chain A Region: 5 - 133 Aligned: 128 Modelled: 129 Confidence: 68.3% Identity: 17% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, putative; PDBTitle: crystal structure of c-terminal domain of putative transcriptional2 regulator from vibrio cholerae, targeted domain 79-240 Phyre2 PDB 3r4k chain D Region: 98 - 134 Aligned: 37 Modelled: 37 Confidence: 62.3% Identity: 22% PDB header:dna binding protein Chain: D: PDB Molecule:transcriptional regulator, iclr family; PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution Phyre2 PDB 3obf chain A Region: 8 - 134 Aligned: 123 Modelled: 127 Confidence: 61.4% Identity: 9% PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator, iclr family; PDBTitle: crystal structure of putative transcriptional regulator, iclr family;2 targeted domain 129...302 Phyre2 PDB 3ksi chain A Region: 98 - 134 Aligned: 37 Modelled: 37 Confidence: 60.2% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol) Phyre2 PDB 1iru chain K Region: 4 - 39 Aligned: 36 Modelled: 36 Confidence: 57.6% Identity: 28% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Proteasome subunits Phyre2 PDB 1iru chain I Region: 4 - 39 Aligned: 36 Modelled: 36 Confidence: 55.8% Identity: 8% Fold: Ntn hydrolase-like Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family: Proteasome subunits Phyre2 PDB 3mq0 chain A Region: 98 - 134 Aligned: 37 Modelled: 37 Confidence: 51.4% Identity: 11% PDB header:transcription repressor Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon; PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr Phyre2 PDB 2ia2 chain D Region: 11 - 134 Aligned: 123 Modelled: 123 Confidence: 49.9% Identity: 19% PDB header:transcription Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1 Phyre2 PDB 2o9b chain A Region: 98 - 133 Aligned: 36 Modelled: 36 Confidence: 48.1% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of bacteriophytochrome chromophore binding domain Phyre2 PDB 1q5r chain D Region: 4 - 49 Aligned: 46 Modelled: 46 Confidence: 46.5% Identity: 20% PDB header:hydrolase Chain: D: PDB Molecule:proteasome alpha-type subunit 1; PDBTitle: the rhodococcus 20s proteasome with unprocessed pro-peptides Phyre2 1 d2a2la1 2 c3fpvC_ 3 c1ysqA_ 4 d2o9aa1 5 c1yspA_ 6 d1tf1a_ 7 c2w1rA_ 8 d1mkma2 9 c1mkmA_ 10 c2g7uB_ 11 c3bjnA_ 12 c3r4kD_ 13 c3obfA_ 14 c3ksiA_ 15 d1iruk_ 16 d1irui_ 17 c3mq0A_ 18 c2ia2D_ 19 c2o9bA_ 20 c1q5rD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2a2la1 100.0 31 Fold:Profilin-like Superfamily:GlcG-like Family:GlcG-like 2 c3fpvC_ 100.0 31 PDB header:heme binding protein Chain: C: PDB Molecule:extracellular haem-binding protein; PDBTitle: crystal structure of hbps 3 c1ysqA_ 92.3 12 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj; PDBTitle: the crystal structure of transcriptional regulator yaij 4 d2o9aa1 88.8 13 Fold:Profilin-like Superfamily:GAF domain-like Family:IclR ligand-binding domain-like 5 c1yspA_ 85.8 16 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator kdgr; PDBTitle: crystal structure of the c-terminal domain of e. coli transcriptional2 regulator kdgr. 6 d1tf1a_ 83.9 10 Fold:Profilin-like Superfamily:GAF domain-like Family:IclR ligand-binding domain-like 7 c2w1rA_ 78.7 37 PDB header:transcription Chain: A: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of the c-terminal domain of b. subtilis2 spovt 8 d1mkma2 74.0 17 Fold:Profilin-like Superfamily:GAF domain-like Family:IclR ligand-binding domain-like 9 c1mkmA_ 71.1 17 PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator; PDBTitle: crystal structure of the thermotoga maritima iclr 10 c2g7uB_ 69.8 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1 11 c3bjnA_ 68.3 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, putative; PDBTitle: crystal structure of c-terminal domain of putative transcriptional2 regulator from vibrio cholerae, targeted domain 79-240 12 c3r4kD_ 62.3 22 PDB header:dna binding protein Chain: D: PDB Molecule:transcriptional regulator, iclr family; PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution 13 c3obfA_ 61.4 9 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator, iclr family; PDBTitle: crystal structure of putative transcriptional regulator, iclr family;2 targeted domain 129...302 14 c3ksiA_ 60.2 24 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol) 15 d1iruk_ 57.6 28 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 16 d1irui_ 55.8 8 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 17 c3mq0A_ 51.4 11 PDB header:transcription repressor Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon; PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr 18 c2ia2D_ 49.9 19 PDB header:transcription Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1 19 c2o9bA_ 48.1 25 PDB header:transferase Chain: A: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of bacteriophytochrome chromophore binding domain 20 c1q5rD_ 46.5 20 PDB header:hydrolase Chain: D: PDB Molecule:proteasome alpha-type subunit 1; PDBTitle: the rhodococcus 20s proteasome with unprocessed pro-peptides 21 d1vhma_ not modelled 46.4 36 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 22 c2oolA_ not modelled 46.3 25 PDB header:signaling protein Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris 23 d1iru2_ not modelled 44.5 16 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 24 d1p0za_ not modelled 43.4 23 Fold:Profilin-like Superfamily:Sensory domain-like Family:Sensory domain of two-component sensor kinase 25 d1irul_ not modelled 43.1 13 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 26 d1rypi_ not modelled 43.0 19 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 27 c3nzwH_ not modelled 42.6 19 PDB header:hydrolase/hydrolase inhibitor Chain: H: PDB Molecule:proteasome component pup1; PDBTitle: crystal structure of the yeast 20s proteasome in complex with 2b 28 d1iruh_ not modelled 39.8 11 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 29 d1ryph_ not modelled 39.6 17 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 30 c2o0yB_ not modelled 38.4 19 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp. 31 d1rypl_ not modelled 38.1 18 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 32 d1rypj_ not modelled 35.7 11 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 33 d1q5qa_ not modelled 35.6 20 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 34 c3bchA_ not modelled 34.7 25 PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor 35 c1vhmB_ not modelled 34.5 36 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein yebr; PDBTitle: crystal structure of an hypothetical protein 36 d1iruj_ not modelled 34.4 8 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 37 c3dbaB_ not modelled 33.7 14 PDB header:hydrolase Chain: B: PDB Molecule:cone cgmp-specific 3',5'-cyclic phosphodiesterase subunit PDBTitle: crystal structure of the cgmp-bound gaf a domain from the2 photoreceptor phosphodiesterase 6c 38 c2w1tB_ not modelled 32.0 33 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 39 d1q5rh_ not modelled 31.8 8 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 40 c3ajvA_ not modelled 31.5 21 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: splicing endonuclease from aeropyrum pernix 41 d1iru1_ not modelled 29.6 16 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 42 c2zyzA_ not modelled 29.4 10 PDB header:splicing Chain: A: PDB Molecule:putative uncharacterized protein pae0789; PDBTitle: pyrobaculum aerophilum splicing endonuclease 43 d1ryp1_ not modelled 29.0 11 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 44 c2gx5B_ not modelled 28.2 24 PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody 45 c3nzxK_ not modelled 28.0 14 PDB header:hydrolase/hydrolase inhibitor Chain: K: PDB Molecule:proteasome component pre2; PDBTitle: crystal structure of the yeast 20s proteasome in complex with ligand2 2c 46 c3d3oA_ not modelled 27.7 11 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator, icir family; PDBTitle: crystal structure of the effector domain of the putative2 transcriptional regulator iclr from acinetobacter sp. adp1 47 c2k31A_ not modelled 27.3 16 PDB header:hydrolase Chain: A: PDB Molecule:phosphodiesterase 5a, cgmp-specific; PDBTitle: solution structure of cgmp-binding gaf domain of2 phosphodiesterase 5 48 d1k3sa_ not modelled 25.5 30 Fold:Secretion chaperone-like Superfamily:Type III secretory system chaperone-like Family:Type III secretory system chaperone 49 c1h4uA_ not modelled 24.9 26 PDB header:extracellular matrix protein Chain: A: PDB Molecule:nidogen-1; PDBTitle: domain g2 of mouse nidogen-1 50 d2veaa1 not modelled 24.7 19 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 51 d2o9ca1 not modelled 24.6 44 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 52 c3p01C_ not modelled 24.1 11 PDB header:signaling protein Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 53 d2uubb1 not modelled 23.5 36 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 54 d1rypk_ not modelled 23.4 14 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 55 c3eeaB_ not modelled 23.3 28 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:gaf domain/hd domain protein; PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens 56 d1b28a_ not modelled 22.8 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 57 d3c2wa1 not modelled 22.3 27 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 58 d1r5ta_ not modelled 21.1 6 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 59 c3mmhA_ not modelled 20.5 17 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: x-ray structure of free methionine-r-sulfoxide reductase from2 neisseria meningitidis in complex with its substrate 60 c3bbnB_ not modelled 20.3 14 PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 61 c2fhgC_ not modelled 19.4 8 PDB header:hydrolase Chain: C: PDB Molecule:proteasome, beta subunit; PDBTitle: crystal structure of mycobacterial tuberculosis proteasome 62 c3izbA_ not modelled 18.6 29 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 63 d2oola1 not modelled 17.5 19 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 64 d1mq0a_ not modelled 17.4 13 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 65 c2zkqb_ not modelled 17.1 25 PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 66 c3h4pj_ not modelled 16.4 17 PDB header:hydrolase Chain: J: PDB Molecule:proteasome subunit alpha; PDBTitle: proteasome 20s core particle from methanocaldococcus2 jannaschii 67 d1bdta_ not modelled 16.3 17 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 68 d1xmta_ not modelled 16.2 29 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 69 d1iruc_ not modelled 16.1 12 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 70 d1ktea_ not modelled 16.0 38 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 71 d2gy9b1 not modelled 15.9 23 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 72 c3c1sA_ not modelled 15.6 38 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin-1; PDBTitle: crystal structure of grx1 in glutathionylated form 73 d1irub_ not modelled 15.6 11 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 74 c3d5jB_ not modelled 15.5 46 PDB header:oxidoreductase Chain: B: PDB Molecule:glutaredoxin-2, mitochondrial; PDBTitle: structure of yeast grx2-c30s mutant with glutathionyl mixed2 disulfide 75 d1wosa1 not modelled 15.2 21 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 76 c2jacA_ not modelled 15.1 38 PDB header:electron transport Chain: A: PDB Molecule:glutaredoxin-1; PDBTitle: glutaredoxin grx1p c30s mutant from yeast 77 d1egoa_ not modelled 14.8 54 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 78 c3ipzA_ not modelled 14.7 25 PDB header:electron transport, oxidoreductase Chain: A: PDB Molecule:monothiol glutaredoxin-s14, chloroplastic; PDBTitle: crystal structure of arabidopsis monothiol glutaredoxin atgrxcp 79 d1q5qh_ not modelled 14.5 8 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 80 c2h6jI_ not modelled 14.5 8 PDB header:hydrolase Chain: I: PDB Molecule:proteasome beta-type subunit 1; PDBTitle: crystal structure of the beta f145a rhodococcus proteasome (casp2 target) 81 c3ieyB_ not modelled 14.3 13 PDB header:hydrolase/rna binding protein Chain: B: PDB Molecule:neq261; PDBTitle: crystal structure of the functional nanoarchaeum equitans trna2 splicing endonuclease 82 c2hzfA_ not modelled 14.0 31 PDB header:electron transport, oxidoreductase Chain: A: PDB Molecule:glutaredoxin-1; PDBTitle: crystal structures of a poxviral glutaredoxin in the oxidized and2 reduced states show redox-correlated structural changes 83 c2ht9A_ not modelled 13.8 46 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin-2; PDBTitle: the structure of dimeric human glutaredoxin 2 84 c3ef5A_ not modelled 13.7 18 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 85 c1s1hB_ not modelled 13.2 33 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 86 c3r2nC_ not modelled 13.0 13 PDB header:hydrolase Chain: C: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae 87 d1jhba_ not modelled 12.9 38 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 88 c2e7pC_ not modelled 12.8 46 PDB header:electron transport Chain: C: PDB Molecule:glutaredoxin; PDBTitle: crystal structure of the holo form of glutaredoxin c1 from populus2 tremula x tremuloides 89 c2wulB_ not modelled 12.5 33 PDB header:oxidoreductase Chain: B: PDB Molecule:glutaredoxin related protein 5; PDBTitle: crystal structure of the human glutaredoxin 5 with bound2 glutathione in an fes cluster 90 d1pj5a1 not modelled 12.5 21 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:Aminomethyltransferase beta-barrel domain Family:Aminomethyltransferase beta-barrel domain 91 c3p01A_ not modelled 12.4 11 PDB header:signaling protein Chain: A: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 92 c2c5sA_ not modelled 12.4 47 PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain 93 c3o5yA_ not modelled 12.1 14 PDB header:transcription regulator Chain: A: PDB Molecule:sensor protein; PDBTitle: the crystal structure of the gaf domain of a two-component sensor2 histidine kinase from bacillus halodurans to 2.45a 94 d1j2qh_ not modelled 12.1 8 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 95 c1mc0A_ not modelled 12.0 22 PDB header:hydrolase Chain: A: PDB Molecule:3',5'-cyclic nucleotide phosphodiesterase 2a; PDBTitle: regulatory segment of mouse 3',5'-cyclic nucleotide phosphodiesterase2 2a, containing the gaf a and gaf b domains 96 c2xznB_ not modelled 11.7 33 PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 97 d1yarh1 not modelled 11.5 8 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Proteasome subunits 98 c3h8qB_ not modelled 11.0 31 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 3; PDBTitle: crystal structure of glutaredoxin domain of human thioredoxin2 reductase 3 99 c3l4nA_ not modelled 11.0 42 PDB header:oxidoreductase Chain: A: PDB Molecule:monothiol glutaredoxin-6; PDBTitle: crystal structure of yeast monothiol glutaredoxin grx6

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0