PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1q5rD_

Fold library id	PDB Header	Molecule	Title
c1q5rD_	PDB header: hydrolase	Chain: D: PDB Molecule: proteasome alpha-type subunit 1;	PDBTitle: the rhodococcus 20s proteasome with unprocessed pro-peptides

Links to external resources
Added to library: Tue Mar 16 11:57:30 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A E Q I M R D R S E L A R K G I A R G R S V V V L T F R D G V L F V A E N P S T A L H K V S E L Y D R L G F A A V G K Y N E F E N L R R A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S
S S S
S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I V H A D M R G Y S Y D R R D V T G R S L A N A Y A Q T L G T I F T E Q P K P Y E V E I C V A E V G R V G S P K A P Q L Y R I T Y D G S I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
S S S
S S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D E Q H F V V M G G T T E P I A T A M R E S Y R A D L D L E A A V G I A V N A L R Q G G V D V A S L E V A V L D Q S R P R R A F R R I A G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
T T
T T
S
S S
T T S S S
S

. . . . . . . . .

Sequence A L E Q L V P A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	E	Q	I	M	R	D	R	S	E	L	A	R	K	G	I	A	R	G	R	S	V	V	V	L	T	F	R	D	G	V	L	F	V	A	E	N	P	S	T	A	L	H	K	V	S	E	L	Y	D	R	L	G	F	A	A	V	G	K	Y	N	E	F	E	N	L	R	R	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S	S									S	S									S		S	S	S		S					S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	V	H	A	D	M	R	G	Y	S	Y	D	R	R	D	V	T	G	R	S	L	A	N	A	Y	A	Q	T	L	G	T	I	F	T	E	Q	P	K	P	Y	E	V	E	I	C	V	A	E	V	G	R	V	G	S	P	K	A	P	Q	L	Y	R	I	T	Y	D	G	S	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S		G	G	G																					S	S	S														S	S												T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	E	Q	H	F	V	V	M	G	G	T	T	E	P	I	A	T	A	M	R	E	S	Y	R	A	D	L	D	L	E	A	A	V	G	I	A	V	N	A	L	R	Q	G	G	V	D	V	A	S	L	E	V	A	V	L	D	Q	S	R	P	R	R	A	F	R	R	I	A	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S					S	S											T	T			T	T																S					S	S									T	T	S	S	S								S
	.	.	.	.	.	.	.	.	.
Sequence	A	L	E	Q	L	V	P	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T