PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3nzwH_

Fold library id	PDB Header	Molecule	Title
c3nzwH_	PDB header: hydrolase/hydrolase inhibitor	Chain: H: PDB Molecule: proteasome component pup1;	PDBTitle: crystal structure of the yeast 20s proteasome in complex with 2b

Links to external resources
Added to library: Sat Feb 19 08:40:20 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T T I V G V K F N N G V V I A A D T R S T Q G P I V A D K N C A K L H R I S P K I W C A G A G T A A D T E A V T Q L I G S N I E L H S L Y T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S R E P R V V S A L Q M L K Q H L F K Y Q G H I G A Y L I V A G V D P T G S H L F S I H A H G S T D V G Y Y L S L G S G S L A A M A V L E S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T T
S
T T
T T S
S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H W K Q D L T K E E A I K L A S D A I Q A G I W N D L G S G S N V D V C V M E I G K D A E Y L R N Y L T P N V R E E K Q K S Y K F P R G T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S
T T S
S S
T T
S

. . . . . . . . . 220 . .

Sequence A V L K E S I V N I C D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	T	I	V	G	V	K	F	N	N	G	V	V	I	A	A	D	T	R	S	T	Q	G	P	I	V	A	D	K	N	C	A	K	L	H	R	I	S	P	K	I	W	C	A	G	A	G	T	A	A	D	T	E	A	V	T	Q	L	I	G	S	N	I	E	L	H	S	L	Y	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T													T	T					T	T									T	T								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	R	E	P	R	V	V	S	A	L	Q	M	L	K	Q	H	L	F	K	Y	Q	G	H	I	G	A	Y	L	I	V	A	G	V	D	P	T	G	S	H	L	F	S	I	H	A	H	G	S	T	D	V	G	Y	Y	L	S	L	G	S	G	S	L	A	A	M	A	V	L	E	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S																		T	T	T		S											T	T									T	T	S						S					S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	W	K	Q	D	L	T	K	E	E	A	I	K	L	A	S	D	A	I	Q	A	G	I	W	N	D	L	G	S	G	S	N	V	D	V	C	V	M	E	I	G	K	D	A	E	Y	L	R	N	Y	L	T	P	N	V	R	E	E	K	Q	K	S	Y	K	F	P	R	G	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S																						T	T			S									T	T	S																		S	S						T	T		S
	.	.	.	.	.	.	.	.	.	220	.	.
Sequence	A	V	L	K	E	S	I	V	N	I	C	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S