Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	S	R	N	N	P	A	R	V	A	I	V	M	G	S	K	S	D	W	A	T	M	Q	F	A	A	E	I	F	E	I	L	N	V	P	H	H	V	E	V	V	S	A	H	R	T	P	D	K	L	F	S	F	A	E	S	A	E	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	G	Y	Q	V	I	I	A	G	A	G	G	A	A	H	L	P	G	M	I	A	A	K	T	L	V	P	V	L	G	V	P	V	Q	S	A	A	L	S	G	V	D	S	L	Y	S	I	V	Q	M	P	R	G	I	P	V	G	T	L	A
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?									?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Sequence		I	G	K	A	G	A	A	N	A	A	L	L	A	A	Q	I	L	A	T	H	D	K	E	L	H	Q	R	L	N	D	W	R	K	A	Q	T	D	E	V	L	E	N	P	D	P	R	G	A	A
Secondary structure
SS confidence
Disorder				?																																						?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qcz chain A Region: 7 - 168 Aligned: 162 Modelled: 162 Confidence: 100.0% Identity: 98% Fold: Flavodoxin-like Superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Phyre2 PDB 3lp6 chain D Region: 1 - 164 Aligned: 162 Modelled: 164 Confidence: 100.0% Identity: 49% PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution Phyre2 PDB 3trh chain I Region: 6 - 164 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 47% PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii Phyre2 PDB 2fw9 chain A Region: 6 - 163 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 59% PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8 Phyre2 PDB 1u11 chain A Region: 6 - 163 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 60% Fold: Flavodoxin-like Superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Phyre2 PDB 3ors chain D Region: 8 - 164 Aligned: 157 Modelled: 157 Confidence: 100.0% Identity: 49% PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus Phyre2 PDB 1o4v chain A Region: 8 - 164 Aligned: 155 Modelled: 157 Confidence: 100.0% Identity: 52% Fold: Flavodoxin-like Superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Phyre2 PDB 1xmp chain A Region: 7 - 161 Aligned: 155 Modelled: 155 Confidence: 100.0% Identity: 60% Fold: Flavodoxin-like Superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Phyre2 PDB 3rgg chain D Region: 7 - 164 Aligned: 153 Modelled: 158 Confidence: 100.0% Identity: 27% PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air Phyre2 PDB 2h31 chain A Region: 3 - 164 Aligned: 157 Modelled: 162 Confidence: 100.0% Identity: 23% PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis Phyre2 PDB 2ywx chain A Region: 10 - 164 Aligned: 149 Modelled: 154 Confidence: 100.0% Identity: 42% PDB header:lyase Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii Phyre2 PDB 1jq5 chain A Region: 4 - 97 Aligned: 94 Modelled: 94 Confidence: 98.0% Identity: 12% Fold: Dehydroquinate synthase-like Superfamily: Dehydroquinate synthase-like Family: Iron-containing alcohol dehydrogenase Phyre2 PDB 1ta9 chain A Region: 3 - 97 Aligned: 94 Modelled: 95 Confidence: 97.6% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe Phyre2 PDB 3ce9 chain A Region: 9 - 97 Aligned: 88 Modelled: 89 Confidence: 97.5% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution Phyre2 PDB 1o2d chain A Region: 9 - 97 Aligned: 89 Modelled: 89 Confidence: 97.4% Identity: 18% Fold: Dehydroquinate synthase-like Superfamily: Dehydroquinate synthase-like Family: Iron-containing alcohol dehydrogenase Phyre2 PDB 3ox4 chain D Region: 3 - 97 Aligned: 95 Modelled: 95 Confidence: 97.3% Identity: 16% PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 2; PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor Phyre2 PDB 1vlj chain A Region: 9 - 97 Aligned: 89 Modelled: 89 Confidence: 97.2% Identity: 17% Fold: Dehydroquinate synthase-like Superfamily: Dehydroquinate synthase-like Family: Iron-containing alcohol dehydrogenase Phyre2 PDB 3bfj chain K Region: 6 - 97 Aligned: 92 Modelled: 92 Confidence: 97.2% Identity: 13% PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase Phyre2 PDB 3jzd chain A Region: 6 - 97 Aligned: 90 Modelled: 92 Confidence: 97.1% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution Phyre2 PDB 3okf chain A Region: 9 - 93 Aligned: 85 Modelled: 85 Confidence: 97.1% Identity: 21% PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae Phyre2 1 d1qcza_ 2 c3lp6D_ 3 c3trhI_ 4 c2fw9A_ 5 d1u11a_ 6 c3orsD_ 7 d1o4va_ 8 d1xmpa_ 9 c3rggD_ 10 c2h31A_ 11 c2ywxA_ 12 d1jq5a_ 13 c1ta9A_ 14 c3ce9A_ 15 d1o2da_ 16 c3ox4D_ 17 d1vlja_ 18 c3bfjK_ 19 c3jzdA_ 20 c3okfA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1qcza_ 100.0 98 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 2 c3lp6D_ 100.0 49 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution 3 c3trhI_ 100.0 47 PDB header:lyase Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii 4 c2fw9A_ 100.0 59 PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8 5 d1u11a_ 100.0 60 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 6 c3orsD_ 100.0 49 PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus 7 d1o4va_ 100.0 52 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 8 d1xmpa_ 100.0 60 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 9 c3rggD_ 100.0 27 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air 10 c2h31A_ 100.0 23 PDB header:ligase, lyase Chain: A: PDB Molecule:multifunctional protein ade2; PDBTitle: crystal structure of human paics, a bifunctional carboxylase and2 synthetase in purine biosynthesis 11 c2ywxA_ 100.0 42 PDB header:lyase Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from methanocaldococcus jannaschii 12 d1jq5a_ 98.0 12 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 13 c1ta9A_ 97.6 13 PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase from schizosaccharomyces2 pombe 14 c3ce9A_ 97.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution 15 d1o2da_ 97.4 18 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 16 c3ox4D_ 97.3 16 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 2; PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor 17 d1vlja_ 97.2 17 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 18 c3bfjK_ 97.2 13 PDB header:oxidoreductase Chain: K: PDB Molecule:1,3-propanediol oxidoreductase; PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase 19 c3jzdA_ 97.1 20 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution 20 c3okfA_ 97.1 21 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae 21 d1rrma_ not modelled 97.1 16 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 22 c3hl0B_ not modelled 96.9 17 PDB header:oxidoreductase Chain: B: PDB Molecule:maleylacetate reductase; PDBTitle: crystal structure of maleylacetate reductase from agrobacterium2 tumefaciens 23 c3uhjE_ not modelled 96.9 14 PDB header:oxidoreductase Chain: E: PDB Molecule:probable glycerol dehydrogenase; PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021 24 c3iv7B_ not modelled 96.8 23 PDB header:oxidoreductase Chain: B: PDB Molecule:alcohol dehydrogenase iv; PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution 25 c2gruB_ not modelled 95.9 23 PDB header:lyase Chain: B: PDB Molecule:2-deoxy-scyllo-inosose synthase; PDBTitle: crystal structure of 2-deoxy-scyllo-inosose synthase2 complexed with carbaglucose-6-phosphate, nad+ and co2+ 26 d1oj7a_ not modelled 95.9 20 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 27 d2pjua1 not modelled 95.9 11 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 28 d1sg6a_ not modelled 95.7 16 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Dehydroquinate synthase, DHQS 29 d1kq3a_ not modelled 95.7 18 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase 30 c3clhA_ not modelled 95.6 16 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori 31 c2q5cA_ not modelled 95.3 12 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 32 c3rf7A_ not modelled 94.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of an iron-containing alcohol dehydrogenase2 (sden_2133) from shewanella denitrificans os-217 at 2.12 a resolution 33 c2bonB_ not modelled 94.6 19 PDB header:transferase Chain: B: PDB Molecule:lipid kinase; PDBTitle: structure of an escherichia coli lipid kinase (yegs) 34 c1xahA_ not modelled 94.5 23 PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of staphlyococcus aureus 3-dehydroquinate2 synthase (dhqs) in complex with zn2+ and nad+ 35 c3lftA_ not modelled 93.9 10 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a 36 c2pjuD_ not modelled 92.8 14 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 37 d2bona1 not modelled 92.7 19 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 38 d1ujna_ not modelled 92.5 18 Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Dehydroquinate synthase, DHQS 39 d1guda_ not modelled 91.8 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 40 d2p1ra1 not modelled 91.5 16 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 41 c2qv7A_ not modelled 91.5 20 PDB header:transferase Chain: A: PDB Molecule:diacylglycerol kinase dgkb; PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg 42 c3s99A_ not modelled 91.2 13 PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak 43 d2qv7a1 not modelled 90.5 20 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 44 c3h8qB_ not modelled 90.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 3; PDBTitle: crystal structure of glutaredoxin domain of human thioredoxin2 reductase 3 45 c3rotA_ not modelled 88.8 15 PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila 46 c2e7pC_ not modelled 88.0 16 PDB header:electron transport Chain: C: PDB Molecule:glutaredoxin; PDBTitle: crystal structure of the holo form of glutaredoxin c1 from populus2 tremula x tremuloides 47 c2iy3A_ not modelled 86.9 19 PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome 48 c2ht9A_ not modelled 86.6 14 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin-2; PDBTitle: the structure of dimeric human glutaredoxin 2 49 d2gm3a1 not modelled 86.6 10 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 50 c2qh8A_ not modelled 85.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of conserved domain protein from vibrio2 cholerae o1 biovar eltor str. n16961 51 c2klxA_ not modelled 84.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston 52 d2jgra1 not modelled 83.7 20 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 53 c2f59B_ not modelled 83.6 17 PDB header:transferase Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 54 c2fqxA_ not modelled 83.5 12 PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine 55 d1nm3a1 not modelled 82.8 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 56 c3fysA_ not modelled 81.8 11 PDB header:fatty acid-binding protein Chain: A: PDB Molecule:protein degv; PDBTitle: crystal structure of degv, a fatty acid binding protein2 from bacillus subtilis 57 d1gega_ not modelled 81.5 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 58 c3fzaA_ not modelled 81.1 20 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: crystal structure of poplar glutaredoxin s12 in complex with2 glutathione and beta-mercaptoethanol 59 c3ak4C_ not modelled 81.1 20 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-dependent quinuclidinone reductase; PDBTitle: crystal structure of nadh-dependent quinuclidinone reductase from2 agrobacterium tumefaciens 60 d2f7wa1 not modelled 80.0 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 61 d1fova_ not modelled 79.7 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 62 c2dwuA_ not modelled 79.7 12 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis 63 d1gcaa_ not modelled 79.3 11 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 64 c3s40C_ not modelled 79.0 9 PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne 65 c3ksmA_ not modelled 78.4 18 PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis 66 c1tvmA_ not modelled 78.1 11 PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system 67 c3opyB_ not modelled 77.6 16 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 68 c3opyH_ not modelled 77.6 16 PDB header:transferase Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 69 c3k2qA_ not modelled 77.6 18 PDB header:transferase Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase; PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88 70 c1zuwA_ not modelled 77.6 14 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase 1; PDBTitle: crystal structure of b.subtilis glutamate racemase (race) with d-glu 71 d1wika_ not modelled 77.1 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 72 d1ejba_ not modelled 76.2 18 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 73 d1pfka_ not modelled 76.2 17 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 74 d1c2ya_ not modelled 75.5 22 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 75 c2fn9A_ not modelled 75.5 17 PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form 76 c1b74A_ not modelled 75.2 16 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: glutamate racemase from aquifex pyrophilus 77 c3dm5A_ not modelled 75.1 13 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 78 d1rvv1_ not modelled 74.2 23 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 79 d1nqua_ not modelled 74.2 16 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 80 c3brsA_ not modelled 73.9 13 PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans 81 c2jfzB_ not modelled 73.8 11 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor 82 d1obba1 not modelled 73.4 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 83 d1di6a_ not modelled 72.8 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 84 c1zxxA_ not modelled 72.4 11 PDB header:transferase Chain: A: PDB Molecule:6-phosphofructokinase; PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii 85 c1ykaA_ not modelled 72.1 5 PDB header:electron transport Chain: A: PDB Molecule:monothiol glutaredoxin ydhd; PDBTitle: solution structure of grx4, a monothiol glutaredoxin from2 e. coli. 86 d4pfka_ not modelled 71.7 19 Fold:Phosphofructokinase Superfamily:Phosphofructokinase Family:Phosphofructokinase 87 d1xi8a3 not modelled 71.2 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 88 c1x60A_ not modelled 71.1 16 PDB header:hydrolase Chain: A: PDB Molecule:sporulation-specific n-acetylmuramoyl-l-alanine PDBTitle: solution structure of the peptidoglycan binding domain of2 b. subtilis cell wall lytic enzyme cwlc 89 d1a4ia2 not modelled 70.8 11 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 90 c2khpA_ not modelled 69.2 15 PDB header:electron transport Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from brucella melitensis 91 c3hcwB_ not modelled 69.1 7 PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus 92 c3h75A_ not modelled 69.1 15 PDB header:sugar binding protein Chain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens 93 c1k0nB_ not modelled 68.7 15 PDB header:metal transport Chain: B: PDB Molecule:chloride intracellular channel protein 1; PDBTitle: chloride intracellular channel 1 (clic1) complexed with glutathione 94 d1jhba_ not modelled 68.6 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 95 c3toxG_ not modelled 68.2 22 PDB header:oxidoreductase Chain: G: PDB Molecule:short chain dehydrogenase; PDBTitle: crystal structure of a short chain dehydrogenase in complex with2 nad(p) from sinorhizobium meliloti 1021 96 d1o6ca_ not modelled 68.1 19 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 97 c3mk3L_ not modelled 67.3 22 PDB header:transferase Chain: L: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase; PDBTitle: crystal structure of lumazine synthase from salmonella typhimurium lt2 98 d1um0a_ not modelled 66.8 15 Fold:Chorismate synthase, AroC Superfamily:Chorismate synthase, AroC Family:Chorismate synthase, AroC 99 c3l49D_ not modelled 66.6 15 PDB header:transport protein Chain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1 100 c2vk2A_ not modelled 66.5 9 PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein 101 d1u0ta_ not modelled 66.1 22 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like 102 c2jfoB_ not modelled 65.6 16 PDB header:isomerase Chain: B: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of enterococcus faecalis glutamate2 racemase in complex with d- and l-glutamate 103 d3eeqa2 not modelled 65.6 11 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like 104 c2qvcC_ not modelled 65.5 12 PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima 105 c2h1fB_ not modelled 64.8 17 PDB header:transferase Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1; PDBTitle: e. coli heptosyltransferase waac with adp 106 c2jahB_ not modelled 64.2 22 PDB header:oxidoreductase Chain: B: PDB Molecule:clavulanic acid dehydrogenase; PDBTitle: biochemical and structural analysis of the clavulanic acid2 dehydeogenase (cad) from streptomyces clavuligerus 107 c3p2oB_ not modelled 64.1 11 PDB header:oxidoreductase, hydrolase Chain: B: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 108 c3rfqC_ not modelled 64.0 12 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 109 c3fy7B_ not modelled 63.8 14 PDB header:transport protein Chain: B: PDB Molecule:chloride intracellular channel protein 3; PDBTitle: crystal structure of homo sapiens clic3 110 c3p2oA_ not modelled 63.6 12 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni 111 d1ktea_ not modelled 63.6 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 112 c2pd6D_ not modelled 63.1 12 PDB header:oxidoreductase Chain: D: PDB Molecule:estradiol 17-beta-dehydrogenase 8; PDBTitle: structure of human hydroxysteroid dehydrogenase type 8, hsd17b8 113 d1pq4a_ not modelled 62.9 14 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:TroA-like 114 c2hzfA_ not modelled 62.9 9 PDB header:electron transport, oxidoreductase Chain: A: PDB Molecule:glutaredoxin-1; PDBTitle: crystal structures of a poxviral glutaredoxin in the oxidized and2 reduced states show redox-correlated structural changes 115 c2higA_ not modelled 62.9 21 PDB header:transferase Chain: A: PDB Molecule:6-phospho-1-fructokinase; PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei. 116 c3se7A_ not modelled 62.8 15 PDB header:ligase Chain: A: PDB Molecule:vana; PDBTitle: ancient vana 117 c2yhsA_ not modelled 61.0 16 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the e. coli srp receptor ftsy 118 d1zema1 not modelled 60.9 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 119 c1z0zC_ not modelled 60.1 19 PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad 120 d1z0sa1 not modelled 60.1 19 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0