Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	N	R	K	Y	F	G	T	D	G	I	R	G	R	V	G	D	A	P	I	T	P	D	F	V	L	K	L	G	W	A	A	G	K	V	L	A	R	H	G	S	R	K	I	I	I	G	K	D	T	R	I	S	G	Y	M	L	E	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	L	E	A	G	L	A	A	A	G	L	S	A	L	F	T	G	P	M	P	T	P	A	V	A	Y	L	T	R	T	F	R	A	E	A	G	I	V	I	S	A	S	H	N	P	F	Y	D	N	G	I	K	F	F	S	I	D	G	T	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	P	D	A	V	E	E	A	I	E	A	E	M	E	K	E	I	S	C	V	D	S	A	E	L	G	K	A	S	R	I	V	D	A	A	G	R	Y	I	E	F	C	K	A	T	F	P	N	E	L	S	L	S	E	L	K	I	V	V	D
Secondary structure
SS confidence
Disorder																				?					?	?																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		C	A	N	G	A	T	Y	H	I	A	P	N	V	L	R	E	L	G	A	N	V	I	A	I	G	C	E	P	N	G	V	N	I	N	A	E	V	G	A	T	D	V	R	A	L	Q	A	R	V	L	A	E	K	A	D	L	G	I	A	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	G	D	G	D	R	V	I	M	V	D	H	E	G	N	K	V	D	G	D	Q	I	M	Y	I	I	A	R	E	G	L	R	Q	G	Q	L	R	G	G	A	V	G	T	L	M	S	N	M	G	L	E	L	A	L	K	Q	L	G	I	P
Secondary structure
SS confidence
Disorder																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	A	R	A	K	V	G	D	R	Y	V	L	E	K	M	Q	E	K	G	W	R	I	G	A	E	N	S	G	H	V	I	L	L	D	K	T	T	T	G	D	G	I	V	A	G	L	Q	V	L	A	A	M	A	R	N	H	M	S	L	H
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	L	C	S	G	M	K	M	F	P	Q	I	L	V	N	V	R	Y	T	A	G	S	G	D	P	L	E	H	E	S	V	K	A	V	T	A	E	V	E	A	A	L	G	N	R	G	R	V	L	L	R	K	S	G	T	E	P	L	I	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Sequence		V	M	V	E	G	E	D	E	A	Q	V	T	E	F	A	H	R	I	A	D	A	V	K	A	V
Secondary structure
SS confidence
Disorder																									?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3pdk chain B Region: 5 - 444 Aligned: 436 Modelled: 440 Confidence: 100.0% Identity: 46% PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: crystal structure of phosphoglucosamine mutase from b. anthracis Phyre2 PDB 1wqa chain B Region: 5 - 445 Aligned: 437 Modelled: 441 Confidence: 100.0% Identity: 33% PDB header:isomerase Chain: B: PDB Molecule:phospho-sugar mutase; PDBTitle: crystal structure of pyrococcus horikoshii2 phosphomannomutase/phosphoglucomutase complexed with mg2+ Phyre2 PDB 2f7l chain A Region: 5 - 444 Aligned: 437 Modelled: 440 Confidence: 100.0% Identity: 28% PDB header:isomerase Chain: A: PDB Molecule:455aa long hypothetical phospho-sugar mutase; PDBTitle: crystal structure of sulfolobus tokodaii2 phosphomannomutase/phosphoglucomutase Phyre2 PDB 3i3w chain B Region: 5 - 444 Aligned: 436 Modelled: 440 Confidence: 100.0% Identity: 43% PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis Phyre2 PDB 3c04 chain A Region: 3 - 445 Aligned: 432 Modelled: 443 Confidence: 100.0% Identity: 26% PDB header:isomerase Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase; PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa Phyre2 PDB 1tuo chain A Region: 1 - 443 Aligned: 429 Modelled: 443 Confidence: 100.0% Identity: 27% PDB header:biosynthetic protein Chain: A: PDB Molecule:putative phosphomannomutase; PDBTitle: crystal structure of putative phosphomannomutase from2 thermus thermophilus hb8 Phyre2 PDB 2fuv chain B Region: 1 - 445 Aligned: 444 Modelled: 443 Confidence: 100.0% Identity: 21% PDB header:isomerase Chain: B: PDB Molecule:phosphoglucomutase; PDBTitle: phosphoglucomutase from salmonella typhimurium. Phyre2 PDB 1c4g chain B Region: 3 - 443 Aligned: 440 Modelled: 440 Confidence: 100.0% Identity: 23% PDB header:transferase Chain: B: PDB Molecule:protein (alpha-d-glucose 1-phosphate PDBTitle: phosphoglucomutase vanadate based transition state analog2 complex Phyre2 PDB 2z0f chain A Region: 1 - 445 Aligned: 422 Modelled: 423 Confidence: 100.0% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:putative phosphoglucomutase; PDBTitle: crystal structure of putative phosphoglucomutase from thermus2 thermophilus hb8 Phyre2 PDB 1kfi chain A Region: 3 - 445 Aligned: 441 Modelled: 443 Confidence: 100.0% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:phosphoglucomutase 1; PDBTitle: crystal structure of the exocytosis-sensitive2 phosphoprotein, pp63/parafusin (phosphoglucomutase) from3 paramecium Phyre2 PDB 2dkd chain A Region: 29 - 443 Aligned: 401 Modelled: 401 Confidence: 100.0% Identity: 24% PDB header:isomerase Chain: A: PDB Molecule:phosphoacetylglucosamine mutase; PDBTitle: crystal structure of n-acetylglucosamine-phosphate mutase,2 a member of the alpha-d-phosphohexomutase superfamily, in3 the product complex Phyre2 PDB 1p5d chain X domain 1 Region: 3 - 137 Aligned: 133 Modelled: 135 Confidence: 100.0% Identity: 26% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 PDB 1kfi chain A domain 1 Region: 3 - 135 Aligned: 132 Modelled: 133 Confidence: 100.0% Identity: 26% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 PDB 3pmg chain A domain 1 Region: 3 - 135 Aligned: 132 Modelled: 133 Confidence: 100.0% Identity: 27% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 PDB 1p5d chain X domain 3 Region: 259 - 366 Aligned: 107 Modelled: 108 Confidence: 99.9% Identity: 19% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 PDB 3pmg chain A domain 3 Region: 258 - 370 Aligned: 112 Modelled: 113 Confidence: 99.9% Identity: 17% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 PDB 1p5d chain X domain 2 Region: 154 - 257 Aligned: 101 Modelled: 104 Confidence: 99.9% Identity: 40% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 PDB 1kfi chain A domain 3 Region: 243 - 370 Aligned: 112 Modelled: 113 Confidence: 99.9% Identity: 18% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 PDB 3pmg chain A domain 2 Region: 155 - 257 Aligned: 103 Modelled: 103 Confidence: 99.9% Identity: 29% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 PDB 1kfi chain A domain 2 Region: 155 - 257 Aligned: 102 Modelled: 103 Confidence: 99.8% Identity: 20% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 1 c3pdkB_ 2 c1wqaB_ 3 c2f7lA_ 4 c3i3wB_ 5 c3c04A_ 6 c1tuoA_ 7 c2fuvB_ 8 c1c4gB_ 9 c2z0fA_ 10 c1kfiA_ 11 c2dkdA_ 12 d1p5dx1 13 d1kfia1 14 d3pmga1 15 d1p5dx3 16 d3pmga3 17 d1p5dx2 18 d1kfia3 19 d3pmga2 20 d1kfia2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3pdkB_ 100.0 46 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: crystal structure of phosphoglucosamine mutase from b. anthracis 2 c1wqaB_ 100.0 33 PDB header:isomerase Chain: B: PDB Molecule:phospho-sugar mutase; PDBTitle: crystal structure of pyrococcus horikoshii2 phosphomannomutase/phosphoglucomutase complexed with mg2+ 3 c2f7lA_ 100.0 28 PDB header:isomerase Chain: A: PDB Molecule:455aa long hypothetical phospho-sugar mutase; PDBTitle: crystal structure of sulfolobus tokodaii2 phosphomannomutase/phosphoglucomutase 4 c3i3wB_ 100.0 43 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis 5 c3c04A_ 100.0 26 PDB header:isomerase Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase; PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa 6 c1tuoA_ 100.0 27 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative phosphomannomutase; PDBTitle: crystal structure of putative phosphomannomutase from2 thermus thermophilus hb8 7 c2fuvB_ 100.0 21 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucomutase; PDBTitle: phosphoglucomutase from salmonella typhimurium. 8 c1c4gB_ 100.0 23 PDB header:transferase Chain: B: PDB Molecule:protein (alpha-d-glucose 1-phosphate PDBTitle: phosphoglucomutase vanadate based transition state analog2 complex 9 c2z0fA_ 100.0 22 PDB header:isomerase Chain: A: PDB Molecule:putative phosphoglucomutase; PDBTitle: crystal structure of putative phosphoglucomutase from thermus2 thermophilus hb8 10 c1kfiA_ 100.0 20 PDB header:isomerase Chain: A: PDB Molecule:phosphoglucomutase 1; PDBTitle: crystal structure of the exocytosis-sensitive2 phosphoprotein, pp63/parafusin (phosphoglucomutase) from3 paramecium 11 c2dkdA_ 100.0 24 PDB header:isomerase Chain: A: PDB Molecule:phosphoacetylglucosamine mutase; PDBTitle: crystal structure of n-acetylglucosamine-phosphate mutase,2 a member of the alpha-d-phosphohexomutase superfamily, in3 the product complex 12 d1p5dx1 100.0 26 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 13 d1kfia1 100.0 26 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 14 d3pmga1 100.0 27 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 15 d1p5dx3 99.9 19 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 16 d3pmga3 99.9 17 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 17 d1p5dx2 99.9 40 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 18 d1kfia3 99.9 18 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 19 d3pmga2 99.9 29 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 20 d1kfia2 99.8 20 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 21 d1p5dx4 not modelled 99.6 19 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 22 d1wjwa_ not modelled 99.4 18 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 23 d1kfia4 not modelled 95.2 18 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 24 d3pmga4 not modelled 94.9 18 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 25 c3he8A_ not modelled 90.8 30 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b 26 d1nn4a_ not modelled 89.2 28 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 27 c3s5pA_ not modelled 89.2 19 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia 28 c3k7pA_ not modelled 88.8 24 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi. 29 c3m1pA_ not modelled 87.5 24 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate 30 d3bula2 not modelled 86.6 14 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 31 d2vvpa1 not modelled 84.2 28 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 32 c3qayC_ not modelled 77.5 18 PDB header:lyase Chain: C: PDB Molecule:endolysin; PDBTitle: catalytic domain of cd27l endolysin targeting clostridia difficile 33 c1k98A_ not modelled 75.9 15 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: adomet complex of meth c-terminal fragment 34 c2g04B_ not modelled 72.4 30 PDB header:isomerase Chain: B: PDB Molecule:probable fatty-acid-coa racemase far; PDBTitle: crystal structure of fatty acid-coa racemase from mycobacterium2 tuberculosis h37rv 35 c2yxbA_ not modelled 71.4 16 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 36 d1ycga1 not modelled 71.1 27 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 37 d1o1xa_ not modelled 71.0 25 Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB 38 d1ccwa_ not modelled 69.7 18 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 39 d1x74a1 not modelled 68.3 39 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 40 c1bmtB_ not modelled 67.4 13 PDB header:methyltransferase Chain: B: PDB Molecule:methionine synthase; PDBTitle: how a protein binds b12: a 3.o angstrom x-ray structure of2 the b12-binding domains of methionine synthase 41 c3sz8D_ not modelled 66.6 9 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 42 d1xk7a1 not modelled 66.3 33 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 43 c2i2xD_ not modelled 64.0 13 PDB header:transferase Chain: D: PDB Molecule:methyltransferase 1; PDBTitle: crystal structure of methanol:cobalamin methyltransferase complex2 mtabc from methanosarcina barkeri 44 c3hlyA_ not modelled 63.3 14 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 45 c2ppwA_ not modelled 63.2 12 PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae 46 c2ohiB_ not modelled 63.0 12 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 47 c1xa3B_ not modelled 62.8 33 PDB header:transferase Chain: B: PDB Molecule:crotonobetainyl-coa:carnitine coa-transferase; PDBTitle: crystal structure of caib, a type iii coa transferase in2 carnitine metabolism 48 c3qd5B_ not modelled 62.7 26 PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr 49 d2vjma1 not modelled 60.5 30 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 50 d1e5da1 not modelled 58.8 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 51 c1y80A_ not modelled 58.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted cobalamin binding protein; PDBTitle: structure of a corrinoid (factor iiim)-binding protein from2 moorella thermoacetica 52 d1q7ea_ not modelled 57.9 30 Fold:CoA-transferase family III (CaiB/BaiF) Superfamily:CoA-transferase family III (CaiB/BaiF) Family:CoA-transferase family III (CaiB/BaiF) 53 c3c5yD_ not modelled 56.5 17 PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution 54 c3ne8A_ not modelled 54.0 17 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of a domain from n-acetylmuramoyl-l-alanine2 amidase of bartonella henselae str. houston-1 55 c2q9uB_ not modelled 53.4 15 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 56 c3nvtA_ not modelled 49.1 12 PDB header:transferase/isomerase Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase; PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e 57 d1b1ca_ not modelled 48.1 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 58 c2yh5A_ not modelled 46.0 13 PDB header:lipid binding protein Chain: A: PDB Molecule:dapx protein; PDBTitle: structure of the c-terminal domain of bamc 59 d1dxha2 not modelled 43.8 15 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 60 c1e5dA_ not modelled 42.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas 61 d1d9ea_ not modelled 41.6 9 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 62 c3ezxA_ not modelled 40.5 12 PDB header:transferase Chain: A: PDB Molecule:monomethylamine corrinoid protein 1; PDBTitle: structure of methanosarcina barkeri monomethylamine2 corrinoid protein 63 c3fniA_ not modelled 38.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 64 d3eeqa2 not modelled 38.2 10 Fold:CbiG N-terminal domain-like Superfamily:CbiG N-terminal domain-like Family:CbiG N-terminal domain-like 65 d1xrsb1 not modelled 37.5 13 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 66 d1vmea1 not modelled 35.2 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 67 c2pfsA_ not modelled 34.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:universal stress protein; PDBTitle: crystal structure of universal stress protein from nitrosomonas2 europaea 68 c1xrsB_ not modelled 33.6 13 PDB header:isomerase Chain: B: PDB Molecule:d-lysine 5,6-aminomutase beta subunit; PDBTitle: crystal structure of lysine 5,6-aminomutase in complex with plp,2 cobalamin, and 5'-deoxyadenosine 69 c3onoA_ not modelled 32.4 8 PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus 70 c3lopA_ not modelled 32.1 16 PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum 71 c2rejA_ not modelled 31.6 6 PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation 72 d7reqa2 not modelled 31.0 10 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 73 c3n0wA_ not modelled 30.6 13 PDB header:transport protein Chain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution 74 c2zkiH_ not modelled 30.2 16 PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) 75 d2cc0a1 not modelled 29.0 20 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 76 d1fmfa_ not modelled 28.0 22 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 77 d1ws6a1 not modelled 27.1 18 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:YhhF-like 78 d1tubb1 not modelled 27.0 4 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 79 c2zf8A_ not modelled 27.0 9 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 80 d2p1ra1 not modelled 24.7 17 Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like 81 c3k6qB_ not modelled 24.5 13 PDB header:ligand binding protein Chain: B: PDB Molecule:putative ligand binding protein; PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution 82 c3qqzA_ not modelled 24.3 0 PDB header:metal binding protein Chain: A: PDB Molecule:putative uncharacterized protein yjik; PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073 83 d1duvg2 not modelled 23.9 14 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 84 d2ebfx2 not modelled 22.5 10 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:PMT domain-like 85 d2btoa1 not modelled 22.5 10 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 86 d1ml4a2 not modelled 22.2 17 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 87 d1qo0a_ not modelled 22.2 14 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 88 d1q77a_ not modelled 21.8 4 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 89 c3ff1B_ not modelled 21.4 13 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus 90 d1a9xa4 not modelled 21.4 25 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 91 c3hjtB_ not modelled 21.3 15 PDB header:cell adhesion, transport protein Chain: B: PDB Molecule:lmb; PDBTitle: structure of laminin binding protein (lmb) of streptococcus2 agalactiae a bifunctional protein with adhesin and metal3 transporting activity 92 d2a5la1 not modelled 21.1 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 93 c3s3tD_ not modelled 20.6 5 PDB header:chaperone Chain: D: PDB Molecule:nucleotide-binding protein, universal stress protein uspa PDBTitle: universal stress protein uspa from lactobacillus plantarum 94 d2z3va1 not modelled 20.3 13 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:Universal stress protein-like 95 d1yt8a4 not modelled 19.9 13 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 96 d1vp8a_ not modelled 19.8 20 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 97 c2x41A_ not modelled 19.7 17 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 98 d1of8a_ not modelled 19.7 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 99 d1ak2a1 not modelled 19.5 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0