Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	E	L	V	V	V	A	I	G	G	N	S	I	I	K	D	N	A	S	Q	S	I	E	H	Q	A	E	A	V	K	A	V	A	D	T	V	L	E	M	L	A	S	D	Y	D	I	V	L	T	H	G	N	G	P	Q	V	G	L	D
Secondary structure
SS confidence
Disorder		?	?	?														?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	R	R	A	E	I	A	H	K	R	E	G	L	P	L	T	P	L	A	N	C	V	A	D	T	Q	G	G	I	G	Y	L	I	Q	Q	A	L	N	N	R	L	A	R	H	G	E	K	K	A	V	T	V	V	T	Q	V	E	V	D	K
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	D	P	G	F	A	H	P	T	K	P	I	G	A	F	F	S	D	S	Q	R	D	E	L	Q	K	A	N	P	D	W	C	F	V	E	D	A	G	R	G	Y	R	R	V	V	A	S	P	E	P	K	R	I	V	E	A	P	A	I	K
Secondary structure
SS confidence
Disorder						?	?																				?	?	?	?	?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	L	I	Q	Q	G	F	V	V	I	G	A	G	G	G	G	I	P	V	V	R	T	D	A	G	D	Y	Q	S	V	D	A	V	I	D	K	D	L	S	T	A	L	L	A	R	E	I	H	A	D	I	L	V	I	T	T	G	V	E	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	C	I	H	F	G	K	P	Q	Q	Q	A	L	D	R	V	D	I	A	T	M	T	R	Y	M	Q	E	G	H	F	P	P	G	S	M	L	P	K	I	I	A	S	L	T	F	L	E	Q	G	G	K	E	V	I	I	T	T	P	E	C
Secondary structure
SS confidence
Disorder																												?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Sequence		L	P	A	A	L	R	G	E	T	G	T	H	I	I	K	T
Secondary structure
SS confidence
Disorder																?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1e19 chain A Region: 3 - 314 Aligned: 310 Modelled: 312 Confidence: 100.0% Identity: 45% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: Carbamate kinase Phyre2 PDB 2e9y chain A Region: 3 - 314 Aligned: 309 Modelled: 310 Confidence: 100.0% Identity: 38% PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 Phyre2 PDB 1b7b chain A Region: 3 - 313 Aligned: 303 Modelled: 311 Confidence: 100.0% Identity: 44% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: Carbamate kinase Phyre2 PDB 3kzf chain C Region: 3 - 315 Aligned: 282 Modelled: 289 Confidence: 100.0% Identity: 41% PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase Phyre2 PDB 2buf chain A domain 1 Region: 2 - 315 Aligned: 258 Modelled: 282 Confidence: 100.0% Identity: 22% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 2rd5 chain A Region: 2 - 315 Aligned: 258 Modelled: 279 Confidence: 100.0% Identity: 20% PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana Phyre2 PDB 2ap9 chain A domain 1 Region: 2 - 315 Aligned: 261 Modelled: 286 Confidence: 100.0% Identity: 20% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 2r98 chain A Region: 2 - 316 Aligned: 249 Modelled: 258 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae Phyre2 PDB 1gs5 chain A Region: 1 - 314 Aligned: 252 Modelled: 289 Confidence: 100.0% Identity: 21% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 2v5h chain B Region: 2 - 316 Aligned: 258 Modelled: 279 Confidence: 100.0% Identity: 20% PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 Phyre2 PDB 2hmf chain A domain 1 Region: 4 - 314 Aligned: 285 Modelled: 308 Confidence: 100.0% Identity: 16% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2bty chain A domain 1 Region: 2 - 316 Aligned: 255 Modelled: 280 Confidence: 100.0% Identity: 18% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: N-acetyl-l-glutamate kinase Phyre2 PDB 3l86 chain A Region: 1 - 314 Aligned: 243 Modelled: 278 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:acetylglutamate kinase; PDBTitle: the crystal structure of smu.665 from streptococcus mutans ua159 Phyre2 PDB 2j5t chain F Region: 3 - 314 Aligned: 235 Modelled: 256 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate Phyre2 PDB 3c1n chain A Region: 4 - 316 Aligned: 287 Modelled: 313 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine Phyre2 PDB 2egx chain A Region: 4 - 313 Aligned: 236 Modelled: 245 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acetylglutamate kinase; PDBTitle: crystal structure of the putative acetylglutamate kinase from thermus2 thermophilus Phyre2 PDB 2w21 chain A Region: 3 - 314 Aligned: 236 Modelled: 256 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. Phyre2 PDB 2cdq chain A domain 1 Region: 3 - 316 Aligned: 287 Modelled: 300 Confidence: 100.0% Identity: 14% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 2j0w chain A domain 1 Region: 3 - 315 Aligned: 281 Modelled: 298 Confidence: 100.0% Identity: 18% Fold: Carbamate kinase-like Superfamily: Carbamate kinase-like Family: PyrH-like Phyre2 PDB 3l76 chain B Region: 4 - 314 Aligned: 229 Modelled: 262 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis Phyre2 1 d1e19a_ 2 c2e9yA_ 3 d1b7ba_ 4 c3kzfC_ 5 d2bufa1 6 c2rd5A_ 7 d2ap9a1 8 c2r98A_ 9 d1gs5a_ 10 c2v5hB_ 11 d2hmfa1 12 d2btya1 13 c3l86A_ 14 c2j5tF_ 15 c3c1nA_ 16 c2egxA_ 17 c2w21A_ 18 d2cdqa1 19 d2j0wa1 20 c3l76B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1e19a_ 100.0 45 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 2 c2e9yA_ 100.0 38 PDB header:transferase Chain: A: PDB Molecule:carbamate kinase; PDBTitle: crystal structure of project ape1968 from aeropyrum pernix k1 3 d1b7ba_ 100.0 44 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:Carbamate kinase 4 c3kzfC_ 100.0 41 PDB header:transferase Chain: C: PDB Molecule:carbamate kinase; PDBTitle: structure of giardia carbamate kinase 5 d2bufa1 100.0 22 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 6 c2rd5A_ 100.0 20 PDB header:protein binding Chain: A: PDB Molecule:acetylglutamate kinase-like protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 7 d2ap9a1 100.0 20 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 8 c2r98A_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:putative acetylglutamate synthase; PDBTitle: crystal structure of n-acetylglutamate synthase (selenomet2 substituted) from neisseria gonorrhoeae 9 d1gs5a_ 100.0 21 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 10 c2v5hB_ 100.0 20 PDB header:transcription Chain: B: PDB Molecule:acetylglutamate kinase; PDBTitle: controlling the storage of nitrogen as arginine: the2 complex of pii and acetylglutamate kinase from3 synechococcus elongatus pcc 7942 11 d2hmfa1 100.0 16 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 12 d2btya1 100.0 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:N-acetyl-l-glutamate kinase 13 c3l86A_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:acetylglutamate kinase; PDBTitle: the crystal structure of smu.665 from streptococcus mutans ua159 14 c2j5tF_ 100.0 18 PDB header:transferase Chain: F: PDB Molecule:glutamate 5-kinase; PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate 15 c3c1nA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 16 c2egxA_ 100.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative acetylglutamate kinase; PDBTitle: crystal structure of the putative acetylglutamate kinase from thermus2 thermophilus 17 c2w21A_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:glutamate 5-kinase; PDBTitle: crystal structure of the aminoacid kinase domain of the2 glutamate 5 kinase of escherichia coli. 18 d2cdqa1 100.0 14 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 19 d2j0wa1 100.0 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 20 c3l76B_ 100.0 17 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 21 d2bnea1 not modelled 100.0 15 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 22 c2cdqB_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 23 c2j0wA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 24 d1ybda1 not modelled 100.0 16 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 25 c3ab4K_ not modelled 100.0 19 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 26 d1z9da1 not modelled 100.0 17 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 27 c3ll5C_ not modelled 100.0 18 PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyl kinase related protein; PDBTitle: crystal structure of t. acidophilum isopentenyl phosphate kinase2 product complex 28 c3ll9A_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: x-ray structures of isopentenyl phosphate kinase 29 c3ek5A_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: unique gtp-binding pocket and allostery of ump kinase from a gram-2 negative phytopathogen bacterium 30 d2akoa1 not modelled 100.0 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 31 c2jjxC_ not modelled 100.0 18 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: the crystal structure of ump kinase from bacillus anthracis2 (ba1797) 32 c3k4yB_ not modelled 100.0 21 PDB header:transferase Chain: B: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: crystal structure of isopentenyl phosphate kinase from m. jannaschii2 in complex with ipp 33 c3nwyB_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis 34 d2a1fa1 not modelled 100.0 18 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 35 c2ogxB_ not modelled 100.0 19 PDB header:metal binding protein Chain: B: PDB Molecule:molybdenum storage protein subunit beta; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 36 c3d40A_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:foma protein; PDBTitle: crystal structure of fosfomycin resistance kinase foma from2 streptomyces wedmorensis complexed with diphosphate 37 d2ij9a1 not modelled 100.0 25 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 38 d2brxa1 not modelled 100.0 22 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 39 c2va1A_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of ump kinase from ureaplasma parvum 40 c2ogxA_ not modelled 100.0 20 PDB header:metal binding protein Chain: A: PDB Molecule:molybdenum storage protein subunit alpha; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 41 c2j4kC_ not modelled 100.0 19 PDB header:transferase Chain: C: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of uridylate kinase from sulfolobus2 solfataricus in complex with ump to 2.2 angstrom3 resolution 42 c3bq9A_ not modelled 56.9 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain- PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145 43 d2zdra2 not modelled 52.9 22 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 44 d1iowa1 not modelled 44.3 20 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain 45 c2dlnA_ not modelled 41.1 20 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 46 c4a1aI_ not modelled 38.5 29 PDB header:ribosome Chain: I: PDB Molecule:60s ribosomal protein l13a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. 47 d1xpja_ not modelled 35.5 13 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 48 c3mn1B_ not modelled 33.4 12 PDB header:hydrolase Chain: B: PDB Molecule:probable yrbi family phosphatase; PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a 49 c2re2A_ not modelled 26.8 12 PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized protein ta1041; PDBTitle: crystal structure of a putative iron-molybdenum cofactor (femo-co)2 dinitrogenase (ta1041m) from thermoplasma acidophilum dsm 1728 at3 1.30 a resolution 50 c3dnpA_ not modelled 26.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:stress response protein yhax; PDBTitle: crystal structure of stress response protein yhax from bacillus2 subtilis 51 c2yx6C_ not modelled 24.3 5 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein ph0822; PDBTitle: crystal structure of ph0822 52 d2b0ja2 not modelled 23.8 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 53 c3r4cA_ not modelled 21.8 18 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, haloacid dehalogenase-like hydrolase; PDBTitle: divergence of structure and function among phosphatases of the2 haloalkanoate (had) enzyme superfamily: analysis of bt1666 from3 bacteroides thetaiotaomicron 54 d1t3va_ not modelled 21.5 9 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 55 d1o13a_ not modelled 21.3 9 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 56 c3izcK_ not modelled 21.0 26 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 57 d2nx2a1 not modelled 20.6 20 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:YpsA-like 58 c2q5cA_ not modelled 19.0 11 PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum 59 c2q4dB_ not modelled 18.9 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950 60 c3f46A_ not modelled 18.8 23 PDB header:oxidoreductase Chain: A: PDB Molecule:5,10-methenyltetrahydromethanopterin hydrogenase; PDBTitle: the crystal structure of c176a mutated [fe]-hydrogenase (hmd)2 holoenzyme from methanocaldococcus jannaschii 61 d1rkqa_ not modelled 18.7 26 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 62 c2q4oA_ not modelled 18.7 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3; PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210 63 d2q4oa1 not modelled 18.7 24 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 64 c3fzqA_ not modelled 18.3 12 PDB header:hydrolase Chain: A: PDB Molecule:putative hydrolase; PDBTitle: crystal structure of putative haloacid dehalogenase-like hydrolase2 (yp_001086940.1) from clostridium difficile 630 at 2.10 a resolution 65 d1wzca1 not modelled 17.1 15 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 66 c3l8hC_ not modelled 16.5 13 PDB header:hydrolase Chain: C: PDB Molecule:putative haloacid dehalogenase-like hydrolase; PDBTitle: crystal structure of d,d-heptose 1.7-bisphosphate phosphatase from b.2 bronchiseptica complexed with magnesium and phosphate 67 d1wpga2 not modelled 16.0 10 Fold:HAD-like Superfamily:HAD-like Family:Meta-cation ATPase, catalytic domain P 68 d1eo1a_ not modelled 15.9 13 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 69 d1ovma1 not modelled 15.4 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 70 d1ydha_ not modelled 15.3 19 Fold:MCP/YpsA-like Superfamily:MCP/YpsA-like Family:MoCo carrier protein-like 71 d1k1ea_ not modelled 15.3 13 Fold:HAD-like Superfamily:HAD-like Family:Probable phosphatase YrbI 72 d1wmaa1 not modelled 14.7 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 73 c3d54D_ not modelled 13.7 25 PDB header:ligase Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1; PDBTitle: stucture of purlqs from thermotoga maritima 74 d2bdua1 not modelled 13.5 11 Fold:HAD-like Superfamily:HAD-like Family:Pyrimidine 5'-nucleotidase (UMPH-1) 75 c2i55C_ not modelled 12.7 14 PDB header:isomerase Chain: C: PDB Molecule:phosphomannomutase; PDBTitle: complex of glucose-1,6-bisphosphate with phosphomannomutase from2 leishmania mexicana 76 d1gzda_ not modelled 12.6 9 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 77 c3ewiB_ not modelled 12.2 8 PDB header:transferase Chain: B: PDB Molecule:n-acylneuraminate cytidylyltransferase; PDBTitle: structural analysis of the c-terminal domain of murine cmp-2 sialic acid synthetase 78 d2b3za1 not modelled 11.6 13 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:RibD C-terminal domain-like 79 d1a9xa3 not modelled 11.5 15 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 80 c3gh1A_ not modelled 11.3 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted nucleotide-binding protein; PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae 81 c3jtwB_ not modelled 11.1 10 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrofolate reductase; PDBTitle: crystal structure of putative dihydrofolate reductase (yp_805003.1)2 from pediococcus pentosaceus atcc 25745 at 1.90 a resolution 82 d2obba1 not modelled 11.1 9 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 83 d2azna1 not modelled 10.7 10 Fold:Dihydrofolate reductase-like Superfamily:Dihydrofolate reductase-like Family:RibD C-terminal domain-like 84 d1n57a_ not modelled 10.7 14 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 85 c3pr3B_ not modelled 10.3 18 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate 86 c3rlhA_ not modelled 10.0 13 PDB header:hydrolase Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a; PDBTitle: crystal structure of a class ii phospholipase d from loxosceles2 intermedia venom 87 d1rdua_ not modelled 10.0 8 Fold:Ribonuclease H-like motif Superfamily:Nitrogenase accessory factor-like Family:MTH1175-like 88 d1iata_ not modelled 9.9 9 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 89 d1l6ra_ not modelled 9.7 16 Fold:HAD-like Superfamily:HAD-like Family:Predicted hydrolases Cof 90 c2qtdA_ not modelled 9.4 6 PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized protein mj0327; PDBTitle: crystal structure of a putative dinitrogenase (mj0327) from2 methanocaldococcus jannaschii dsm at 1.70 a resolution 91 c2qbuA_ not modelled 9.4 17 PDB header:transferase Chain: A: PDB Molecule:precorrin-2 methyltransferase; PDBTitle: crystal structure of methanothermobacter thermautotrophicus cbil 92 c3rlgA_ not modelled 9.3 17 PDB header:hydrolase Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a; PDBTitle: crystal structure of loxosceles intermedia phospholipase d isoform 12 h12a mutant 93 c3k3pA_ not modelled 9.2 20 PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of the apo form of d-alanine:d-alanine ligase (ddl)2 from streptococcus mutans 94 d1r0ka3 not modelled 9.0 10 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 95 c3ujhB_ not modelled 8.9 22 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii 96 c2o2cB_ not modelled 8.8 18 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site 97 c3nbuC_ not modelled 8.6 16 PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase 98 c2ekdD_ not modelled 8.5 25 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein ph0250; PDBTitle: structural study of project id ph0250 from pyrococcus horikoshii ot3 99 d1o8ca2 not modelled 8.4 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0