PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2ekdD_

Fold library id	PDB Header	Molecule	Title
c2ekdD_	PDB header: structural genomics, unknown function	Chain: D: PDB Molecule: hypothetical protein ph0250;	PDBTitle: structural study of project id ph0250 from pyrococcus2 horikoshii ot3

Links to external resources
Added to library: Tue Mar 16 13:16:19 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X N S E K F F K L F R V G E T V L V E Y S G T S R A E L L L Y Y I V N N S K L P I V V D D I L D T Y Y E F Y T R L K V A G F D V A P L E N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
T T
T T S
T T T
S S
B T T T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q V I K X G G T K D I G R V I G R L N I S K Y V I S E Q E Y X E I V S Q L K D Y P V I N P V L G L H K L I L L G N T F E N I N V V K X V S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S
B T T B
T T
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . .

Sequence Y V G R E E R I A F Y F V N R N V I E K H S S P I L D L L E E V V T S I L E I T D S G I I I K K S I K D E I A G K I V S P L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S S T T
S
T T T T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	N	S	E	K	F	F	K	L	F	R	V	G	E	T	V	L	V	E	Y	S	G	T	S	R	A	E	L	L	L	Y	Y	I	V	N	N	S	K	L	P	I	V	V	D	D	I	L	D	T	Y	Y	E	F	Y	T	R	L	K	V	A	G	F	D	V	A	P	L	E	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G	S		T	T									T	T	S		T									T	T		S	S		B						T	T												T	T								S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	V	I	K	X	G	G	T	K	D	I	G	R	V	I	G	R	L	N	I	S	K	Y	V	I	S	E	Q	E	Y	X	E	I	V	S	Q	L	K	D	Y	P	V	I	N	P	V	L	G	L	H	K	L	I	L	L	G	N	T	F	E	N	I	N	V	V	K	X	V	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S		S				S									B	T	T	B											T	T			S																	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Sequence	Y	V	G	R	E	E	R	I	A	F	Y	F	V	N	R	N	V	I	E	K	H	S	S	P	I	L	D	L	L	E	E	V	V	T	S	I	L	E	I	T	D	S	G	I	I	I	K	K	S	I	K	D	E	I	A	G	K	I	V	S	P	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T		T	T																											S	S							T	T								S		T	T	T	T	T					T	T