Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	K	R	V	F	L	S	L	L	V	L	I	G	L	L	L	L	T	V	L	G	L	D	R	W	M	S	W	K	T	A	P	Y	I	Y	D	E	L	Q	D	L	P	Y	R	Q	V	G	V	V	L	G	T	A	K	Y	Y	R	T	G
Secondary structure
SS confidence
Disorder		?	?	?																													?	?	?	?	?	?	?	?																	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	I	N	Q	Y	Y	R	Y	R	I	Q	G	A	I	N	A	Y	N	S	G	K	V	N	Y	L	L	L	S	G	D	N	A	L	Q	S	Y	N	E	P	M	T	M	R	K	D	L	I	A	A	G	V	D	P	S	D	I	V	L	D	Y
Secondary structure
SS confidence
Disorder																																	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	G	F	R	T	L	D	S	I	V	R	T	R	K	V	F	D	T	N	D	F	I	I	I	T	Q	R	F	H	C	E	R	A	L	F	I	A	L	H	M	G	I	Q	A	Q	C	Y	A	V	P	S	P	K	D	M	L	S	V	R	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence		R	E	F	A	A	R	F	G	A	L	A	D	L	Y	I	F	K	R	E	P	R	F	L	G	P	L	V	P	I	P	A	M	H	Q	V	P	E	D	A	Q	G	Y	P	A	V	T	P	E	Q	L	L	E	L	Q	K	K	Q	G	K
Secondary structure
SS confidence
Disorder																														?	?	?	?	?	?	?	?	?	?	?																	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ca8 chain B Region: 19 - 160 Aligned: 129 Modelled: 142 Confidence: 99.9% Identity: 11% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme Phyre2 PDB 3k13 chain A Region: 68 - 164 Aligned: 97 Modelled: 94 Confidence: 94.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron Phyre2 PDB 2zf8 chain A Region: 57 - 123 Aligned: 67 Modelled: 66 Confidence: 93.2% Identity: 15% PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty Phyre2 PDB 2aiz chain P domain 1 Region: 57 - 124 Aligned: 68 Modelled: 68 Confidence: 93.0% Identity: 16% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 2hqs chain C domain 1 Region: 57 - 124 Aligned: 68 Modelled: 68 Confidence: 91.4% Identity: 16% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 1r1m chain A Region: 57 - 124 Aligned: 68 Modelled: 68 Confidence: 90.1% Identity: 12% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis Phyre2 PDB 1r1m chain A Region: 57 - 124 Aligned: 68 Modelled: 68 Confidence: 90.1% Identity: 12% Fold: Bacillus chorismate mutase-like Superfamily: OmpA-like Family: OmpA-like Phyre2 PDB 2kgw chain A Region: 57 - 124 Aligned: 68 Modelled: 68 Confidence: 87.9% Identity: 10% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis Phyre2 PDB 2l26 chain A Region: 57 - 124 Aligned: 68 Modelled: 68 Confidence: 87.1% Identity: 12% PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains Phyre2 PDB 3khn chain B Region: 47 - 124 Aligned: 78 Modelled: 78 Confidence: 87.1% Identity: 10% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. Phyre2 PDB 1mio chain B Region: 36 - 185 Aligned: 134 Modelled: 137 Confidence: 84.3% Identity: 13% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 1p5d chain X domain 1 Region: 59 - 151 Aligned: 86 Modelled: 93 Confidence: 83.9% Identity: 17% Fold: Phosphoglucomutase, first 3 domains Superfamily: Phosphoglucomutase, first 3 domains Family: Phosphoglucomutase, first 3 domains Phyre2 PDB 2h9a chain B Region: 68 - 135 Aligned: 64 Modelled: 68 Confidence: 83.9% Identity: 11% PDB header:oxidoreductase Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron- PDBTitle: corrinoid iron-sulfur protein Phyre2 PDB 2k1s chain A Region: 57 - 124 Aligned: 68 Modelled: 68 Confidence: 82.5% Identity: 15% PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. Phyre2 PDB 3rhg chain A Region: 52 - 116 Aligned: 65 Modelled: 65 Confidence: 82.1% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 Phyre2 PDB 3oon chain A Region: 57 - 122 Aligned: 66 Modelled: 66 Confidence: 81.8% Identity: 26% PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 Phyre2 PDB 1c7q chain A Region: 46 - 147 Aligned: 93 Modelled: 102 Confidence: 79.0% Identity: 13% Fold: SIS domain Superfamily: SIS domain Family: Phosphoglucose isomerase, PGI Phyre2 PDB 3qi7 chain A Region: 38 - 174 Aligned: 112 Modelled: 129 Confidence: 76.4% Identity: 13% PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Phyre2 PDB 1qh8 chain B Region: 31 - 185 Aligned: 139 Modelled: 155 Confidence: 74.3% Identity: 9% Fold: Chelatase-like Superfamily: "Helical backbone" metal receptor Family: Nitrogenase iron-molybdenum protein Phyre2 PDB 3c04 chain A Region: 59 - 151 Aligned: 86 Modelled: 93 Confidence: 73.8% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase; PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa Phyre2 PDB 2dji chain A domain 3 Region: 34 - 238 Aligned: 188 Modelled: 188 Confidence: 64.3% Identity: 13% Fold: Thiamin diphosphate-binding fold (THDP-binding) Superfamily: Thiamin diphosphate-binding fold (THDP-binding) Family: Pyruvate oxidase and decarboxylase PP module Phyre2 1 c3ca8B_ 2 c3k13A_ 3 c2zf8A_ 4 d2aizp1 5 d2hqsc1 6 c1r1mA_ 7 d1r1ma_ 8 c2kgwA_ 9 c2l26A_ 10 c3khnB_ 11 d1miob_ 12 d1p5dx1 13 c2h9aB_ 14 c2k1sA_ 15 c3rhgA_ 16 c3oonA_ 17 d1c7qa_ 18 c3qi7A_ 19 d1qh8b_ 20 c3c04A_ 21 22 23 24 25 26 27 28 d2djia3 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3ca8B_ 99.9 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ydcf; PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme 2 c3k13A_ 94.0 15 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 3 c2zf8A_ 93.2 15 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 4 d2aizp1 93.0 16 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 5 d2hqsc1 91.4 16 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 6 c1r1mA_ 90.1 12 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis 7 d1r1ma_ 90.1 12 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 8 c2kgwA_ 87.9 10 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis 9 c2l26A_ 87.1 12 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains 10 c3khnB_ 87.1 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. 11 d1miob_ 84.3 13 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 12 d1p5dx1 83.9 17 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 13 c2h9aB_ 83.9 11 PDB header:oxidoreductase Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron- PDBTitle: corrinoid iron-sulfur protein 14 c2k1sA_ 82.5 15 PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. 15 c3rhgA_ 82.1 18 PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 16 c3oonA_ 81.8 26 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 17 d1c7qa_ 79.0 13 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 18 c3qi7A_ 76.4 13 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 19 d1qh8b_ 74.3 9 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 20 c3c04A_ 73.8 17 PDB header:isomerase Chain: A: PDB Molecule:phosphomannomutase/phosphoglucomutase; PDBTitle: structure of the p368g mutant of pmm/pgm from p. aeruginosa 21 c2yciX_ not modelled 71.7 12 PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native 22 c3tr9A_ not modelled 69.0 16 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: structure of a dihydropteroate synthase (folp) in complex with pteroic2 acid from coxiella burnetii 23 c2rgyA_ not modelled 66.4 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of transcriptional regulator of laci family from2 burkhoderia phymatum 24 c2h9aA_ not modelled 66.1 14 PDB header:oxidoreductase Chain: A: PDB Molecule:carbon monoxide dehydrogenase corrinoid/iron- PDBTitle: corrinoid iron-sulfur protein 25 c1zzgB_ not modelled 65.8 14 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8 26 c3e3mA_ not modelled 65.3 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a laci family transcriptional2 regulator from silicibacter pomeroyi 27 d1ad1a_ not modelled 65.1 19 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 28 d2djia3 64.3 13 Fold:Thiamin diphosphate-binding fold (THDP-binding) Superfamily:Thiamin diphosphate-binding fold (THDP-binding) Family:Pyruvate oxidase and decarboxylase PP module 29 d1f6ya_ not modelled 61.8 13 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 30 d2nzug1 not modelled 61.6 14 Fold:Periplasmic binding protein-like I Superfamily:Periplasmic binding protein-like I Family:L-arabinose binding protein-like 31 d3pmga1 not modelled 61.2 16 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 32 d1vm8a_ not modelled 60.7 19 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 33 d2nvma1 not modelled 59.7 25 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 34 c2xmhB_ not modelled 59.5 11 PDB header:transferase Chain: B: PDB Molecule:ctp-inositol-1-phosphate cytidylyltransferase; PDBTitle: the x-ray structure of ctp:inositol-1-phosphate2 cytidylyltransferase from archaeoglobus fulgidus 35 c3i3wB_ not modelled 58.5 19 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucosamine mutase; PDBTitle: structure of a phosphoglucosamine mutase from francisella tularensis 36 d2nlva1 not modelled 58.4 35 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 37 c3brqA_ not modelled 57.3 10 PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional regulator ascg; PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg 38 c3cs3A_ not modelled 56.2 15 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 39 d2nwva1 not modelled 56.1 35 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 40 c3d7qB_ not modelled 54.7 30 PDB header:unknown function Chain: B: PDB Molecule:xisi protein-like; PDBTitle: crystal structure of a xisi-like protein (npun_ar114) from nostoc2 punctiforme pcc 73102 at 2.30 a resolution 41 c3h5oB_ not modelled 54.4 13 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator gntr; PDBTitle: the crystal structure of transcription regulator gntr from2 chromobacterium violaceum 42 c3ldtA_ not modelled 54.3 12 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila 43 c3m5uA_ not modelled 54.2 13 PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni 44 d1jv1a_ not modelled 53.6 20 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase 45 c3td4D_ not modelled 51.6 13 PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate 46 c3d8uA_ not modelled 51.2 9 PDB header:transcription regulator Chain: A: PDB Molecule:purr transcriptional regulator; PDBTitle: the crystal structure of a purr family transcriptional regulator from2 vibrio parahaemolyticus rimd 2210633 47 c2q8nB_ not modelled 50.8 10 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution 48 c3euaD_ not modelled 50.4 9 PDB header:isomerase Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase; PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution 49 d2a1fa1 not modelled 50.0 13 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 50 d1hm5a_ not modelled 49.7 18 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 51 c1vbkA_ not modelled 46.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 52 c3pdiB_ not modelled 45.3 11 PDB header:protein binding Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn; PDBTitle: precursor bound nifen 53 c3oc9A_ not modelled 44.8 13 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica 54 d1eyea_ not modelled 44.5 21 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 55 c2vp8A_ not modelled 44.3 14 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase 2; PDBTitle: structure of mycobacterium tuberculosis rv1207 56 c3clkB_ not modelled 43.2 14 PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum 57 c2fuvB_ not modelled 42.1 21 PDB header:isomerase Chain: B: PDB Molecule:phosphoglucomutase; PDBTitle: phosphoglucomutase from salmonella typhimurium. 58 c2y5sA_ not modelled 42.0 19 PDB header:transferase Chain: A: PDB Molecule:dihydropteroate synthase; PDBTitle: crystal structure of burkholderia cenocepacia dihydropteroate2 synthase complexed with 7,8-dihydropteroate. 59 d2g6ta1 not modelled 39.2 16 Fold:CAC2185-like Superfamily:CAC2185-like Family:CAC2185-like 60 c2r6hC_ not modelled 37.9 21 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis 61 c3d7nA_ not modelled 37.3 14 PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens 62 c3qk7C_ not modelled 37.0 12 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 63 c2vefB_ not modelled 37.0 21 PDB header:transferase Chain: B: PDB Molecule:dihydropteroate synthase; PDBTitle: dihydropteroate synthase from streptococcus pneumoniae 64 d2ji7a1 not modelled 36.5 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 65 d1t3ta6 not modelled 36.2 14 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 66 d1m1nb_ not modelled 36.0 11 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 67 c1ir6A_ not modelled 34.1 12 PDB header:hydrolase Chain: A: PDB Molecule:exonuclease recj; PDBTitle: crystal structure of exonuclease recj bound to manganese 68 d1ir6a_ not modelled 34.1 12 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Exonuclease RecJ 69 d1xpja_ not modelled 33.5 10 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 70 d1iata_ not modelled 33.2 16 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 71 c2wu8A_ not modelled 33.0 16 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv 72 c3ff1B_ not modelled 32.7 20 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus 73 d3bofa1 not modelled 32.6 17 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 74 c2kpoA_ not modelled 32.3 23 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x2 fold protein; PDBTitle: solution nmr structure of de novo designed rossmann 2x2 fold protein,2 northeast structural genomics consortium target or16 75 d2djia1 not modelled 32.0 10 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 76 d1ru8a_ not modelled 31.1 11 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 77 c3gv0A_ not modelled 29.5 8 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens 78 c3pe3D_ not modelled 29.3 10 PDB header:transferase Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n- PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate 79 c2yqsA_ not modelled 29.2 22 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form 80 c3nwyB_ not modelled 29.1 13 PDB header:transferase Chain: B: PDB Molecule:uridylate kinase; PDBTitle: structure and allosteric regulation of the uridine monophosphate2 kinase from mycobacterium tuberculosis 81 d1ozha1 not modelled 28.8 12 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 82 c3dbiA_ not modelled 28.5 10 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate 83 d1cqxa3 not modelled 28.0 12 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 84 d1rz3a_ not modelled 27.2 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase 85 d2akoa1 not modelled 27.2 9 Fold:Carbamate kinase-like Superfamily:Carbamate kinase-like Family:PyrH-like 86 c3k32D_ not modelled 26.6 19 PDB header:transferase Chain: D: PDB Molecule:uncharacterized protein mj0690; PDBTitle: the crystal structure of predicted subunit of trna2 methyltransferase from methanocaldococcus jannaschii dsm 87 c3dwgA_ not modelled 26.5 17 PDB header:transferase Chain: A: PDB Molecule:cysteine synthase b; PDBTitle: crystal structure of a sulfur carrier protein complex found in the2 cysteine biosynthetic pathway of mycobacterium tuberculosis 88 d1gzda_ not modelled 26.4 14 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 89 c2zvyB_ not modelled 26.3 23 PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) 90 d1u0fa_ not modelled 26.2 15 Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI 91 d1vg0a1 not modelled 26.1 23 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:GDI-like N domain 92 d1ybha1 not modelled 26.0 11 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 93 c3hbmA_ not modelled 25.5 23 PDB header:hydrolase Chain: A: PDB Molecule:udp-sugar hydrolase; PDBTitle: crystal structure of pseg from campylobacter jejuni 94 c3hcwB_ not modelled 25.2 9 PDB header:rna binding protein Chain: B: PDB Molecule:maltose operon transcriptional repressor; PDBTitle: crystal structure of probable maltose operon transcriptional repressor2 malr from staphylococcus areus 95 d1jqlb_ not modelled 25.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 96 d1lvla2 not modelled 24.6 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 97 c1tx2A_ not modelled 24.3 21 PDB header:transferase Chain: A: PDB Molecule:dhps, dihydropteroate synthase; PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis 98 d1tx2a_ not modelled 24.3 21 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 99 d3lada2 not modelled 24.2 17 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 100 c2xdqA_ not modelled 24.2 8 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 101 c3ll5C_ not modelled 24.1 10 PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyl kinase related protein; PDBTitle: crystal structure of t. acidophilum isopentenyl phosphate kinase2 product complex 102 c2pqmA_ not modelled 24.0 12 PDB header:lyase Chain: A: PDB Molecule:cysteine synthase; PDBTitle: crystal structure of cysteine synthase (oass) from entamoeba2 histolytica at 1.86 a resolution 103 c3mn1B_ not modelled 23.4 16 PDB header:hydrolase Chain: B: PDB Molecule:probable yrbi family phosphatase; PDBTitle: crystal structure of probable yrbi family phosphatase from pseudomonas2 syringae pv.phaseolica 1448a 104 c2va1A_ not modelled 23.2 12 PDB header:transferase Chain: A: PDB Molecule:uridylate kinase; PDBTitle: crystal structure of ump kinase from ureaplasma parvum 105 c3ljkA_ not modelled 23.0 14 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. 106 d1vmea1 not modelled 23.0 19 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 107 c2x5sB_ not modelled 22.5 12 PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state. 108 c3k9cA_ not modelled 21.9 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family protein; PDBTitle: crystal structure of laci transcriptional regulator from rhodococcus2 species. 109 c1t10A_ not modelled 21.8 13 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate 110 c2cunA_ not modelled 21.5 23 PDB header:transferase Chain: A: PDB Molecule:phosphoglycerate kinase; PDBTitle: crystal structure of phosphoglycerate kinase from pyrococcus2 horikoshii ot3 111 c2vsnB_ not modelled 21.4 13 PDB header:transferase Chain: B: PDB Molecule:xcogt; PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation 112 c3f0hA_ not modelled 21.3 10 PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution 113 c3k4hA_ not modelled 21.2 12 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator laci from2 bacillus cereus subsp. cytotoxis nvh 391-98 114 c3fxaA_ not modelled 21.0 8 PDB header:sugar binding protein Chain: A: PDB Molecule:sis domain protein; PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution 115 c3egcF_ not modelled 20.7 15 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative ribose operon repressor; PDBTitle: crystal structure of a putative ribose operon repressor from2 burkholderia thailandensis 116 c3p1tB_ not modelled 20.5 16 PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution 117 d1ebda2 not modelled 20.4 25 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 118 c3q41B_ not modelled 20.2 6 PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) 119 d1pvda1 not modelled 20.1 10 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 120 c2o2cB_ not modelled 20.0 11 PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0