PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2k1sA_

Fold library id	PDB Header	Molecule	Title
c2k1sA_	PDB header: lipoprotein	Chain: A: PDB Molecule: inner membrane lipoprotein yiad;	PDBTitle: solution nmr structure of the folded c-terminal fragment of2 yiad from escherichia coli. northeast structural genomics3 consortium target er553.

Links to external resources
Added to library: Tue Mar 16 14:10:55 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y Y M D V Q E A K L R D K M R G T G V S V T R S G D N I I L N M P N N V T F D S S S A T L K P A G A N T L T G V A M V L K E Y P K T A V N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T S
T T B S S S S S
B
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I G Y T D S T G G H D L N M R L S Q Q R A D S V A S A L I T Q G V D A S R I R T Q G L G P A N P I A S N S T A E G K A Q N R R V E I T L S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
G G G
T T T
S S
S S S S

. . . . . . . . .

Sequence L L E H H H H H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	Y	M	D	V	Q	E	A	K	L	R	D	K	M	R	G	T	G	V	S	V	T	R	S	G	D	N	I	I	L	N	M	P	N	N	V	T	F	D	S	S	S	A	T	L	K	P	A	G	A	N	T	L	T	G	V	A	M	V	L	K	E	Y	P	K	T	A	V	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S											T	T	T	T	S							T	T												B	S	S	S	S	S		B																			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	G	Y	T	D	S	T	G	G	H	D	L	N	M	R	L	S	Q	Q	R	A	D	S	V	A	S	A	L	I	T	Q	G	V	D	A	S	R	I	R	T	Q	G	L	G	P	A	N	P	I	A	S	N	S	T	A	E	G	K	A	Q	N	R	R	V	E	I	T	L	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T																								T			G	G	G							T	T	T			S	S		S	S	S								S
	.	.	.	.	.	.	.	.	.
Sequence	L	L	E	H	H	H	H	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S