PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2r6hC_

Fold library id	PDB Header	Molecule	Title
c2r6hC_	PDB header: oxidoreductase	Chain: C: PDB Molecule: nadh:ubiquinone oxidoreductase, na translocating,	PDBTitle: crystal structure of the domain comprising the nad binding2 and the fad binding regions of the nadh:ubiquinone3 oxidoreductase, na translocating, f subunit from4 porphyromonas gingivalis

Links to external resources
Added to library: Tue Mar 16 12:02:31 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N A V F G V K E W E C E V L S N K N V S T F I K E F V V K L P E G E T X N F K S G S Y A Q I K I P K Y N I R Y A D Y D I Q D R F R G D W D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
S T T
T T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence X D A W S L T C K N E E E T V R A Y S X A N Y P A E G N I I T L N V R I A T P P F D R A A N K W K A G I K P G I S S S Y I F S L K P G D K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G
S
S
T T
S
T T T T
T T
T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence X X S G P Y G D F H I Q D T D A E X L Y I G G G A G X A P L R A Q I L H L F R T L K T G R K V S Y W Y G A R S K N E I F Y E E D F R E I E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
G G G T S
S
S S G G G
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E F P N F K F H I A L S D P Q P E D N W T G Y V G F I H Q V I Y D N Y L K D H D A P E D I E Y Y X C G P G P X A N A V K G X L E N L G V P R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
G G G
S S
T T T T
S
G G G
T
G

. . . . . . . . .

Sequence N X L F F D D F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	A	V	F	G	V	K	E	W	E	C	E	V	L	S	N	K	N	V	S	T	F	I	K	E	F	V	V	K	L	P	E	G	E	T	X	N	F	K	S	G	S	Y	A	Q	I	K	I	P	K	Y	N	I	R	Y	A	D	Y	D	I	Q	D	R	F	R	G	D	W	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S	S	S	S									S	T	T							T	T														G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	X	D	A	W	S	L	T	C	K	N	E	E	E	T	V	R	A	Y	S	X	A	N	Y	P	A	E	G	N	I	I	T	L	N	V	R	I	A	T	P	P	F	D	R	A	A	N	K	W	K	A	G	I	K	P	G	I	S	S	S	Y	I	F	S	L	K	P	G	D	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	G	G	G							S										S		T	T			S															T	T	T	T				T	T												T			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	X	X	S	G	P	Y	G	D	F	H	I	Q	D	T	D	A	E	X	L	Y	I	G	G	G	A	G	X	A	P	L	R	A	Q	I	L	H	L	F	R	T	L	K	T	G	R	K	V	S	Y	W	Y	G	A	R	S	K	N	E	I	F	Y	E	E	D	F	R	E	I	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S	S								G	G	G														T	S				S									S	S	G	G	G			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	F	P	N	F	K	F	H	I	A	L	S	D	P	Q	P	E	D	N	W	T	G	Y	V	G	F	I	H	Q	V	I	Y	D	N	Y	L	K	D	H	D	A	P	E	D	I	E	Y	Y	X	C	G	P	G	P	X	A	N	A	V	K	G	X	L	E	N	L	G	V	P	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T								S	S			G	G	G				S			S										T	T	T	T		S		G	G	G																							T			G
	.	.	.	.	.	.	.	.	.
Sequence	N	X	L	F	F	D	D	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G