PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3ca8B_

Fold library id	PDB Header	Molecule	Title
c3ca8B_	PDB header: structural genomics, unknown function	Chain: B: PDB Molecule: protein ydcf;	PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-2 methionine utilizing enzyme

Links to external resources
Added to library: Tue Mar 16 12:23:06 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P F P T L S P A T I D A I N V I G Q W L A Q D D F S G E V P Y Q A D C V I L A G N A V M P T I D A A C K I A R D Q Q I P L L I S G G I G H S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
S
S
T
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T T F L Y S A I A Q H P H Y N T I R T T G R A E A T I L A D I A H Q F W H I P H E K I W I E D Q S T N C G E N A R F S I A L L N Q A V E R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T G G G S
T T S
T T
G G G
S T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H T A I V V Q D P T M Q R R T M A T F R R M T G D N P D A P R W L S Y P G F V P Q L G N N A D S V I F I N Q L Q G L W P V E R Y L S L L T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
B T T B
S
S S
T T S S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . .

Sequence E L P R L R D D S D G Y G P R G R D F I V H V D F P A E V I H A W Q T L K H D A V L I E A M E S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T S S S T T T T
S S
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	F	P	T	L	S	P	A	T	I	D	A	I	N	V	I	G	Q	W	L	A	Q	D	D	F	S	G	E	V	P	Y	Q	A	D	C	V	I	L	A	G	N	A	V	M	P	T	I	D	A	A	C	K	I	A	R	D	Q	Q	I	P	L	L	I	S	G	G	I	G	H	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T	T	T	T	T						S								S																T									S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	T	F	L	Y	S	A	I	A	Q	H	P	H	Y	N	T	I	R	T	T	G	R	A	E	A	T	I	L	A	D	I	A	H	Q	F	W	H	I	P	H	E	K	I	W	I	E	D	Q	S	T	N	C	G	E	N	A	R	F	S	I	A	L	L	N	Q	A	V	E	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T		T	T	G	G	G	S			T	T	S													T	T				G	G	G									S														T		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	T	A	I	V	V	Q	D	P	T	M	Q	R	R	T	M	A	T	F	R	R	M	T	G	D	N	P	D	A	P	R	W	L	S	Y	P	G	F	V	P	Q	L	G	N	N	A	D	S	V	I	F	I	N	Q	L	Q	G	L	W	P	V	E	R	Y	L	S	L	L	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S								G	G	G															B	T	T	B		S						S	S								T	T					S	S			S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Sequence	E	L	P	R	L	R	D	D	S	D	G	Y	G	P	R	G	R	D	F	I	V	H	V	D	F	P	A	E	V	I	H	A	W	Q	T	L	K	H	D	A	V	L	I	E	A	M	E	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S		S	T	T	S	S	S	T	T	T	T		S	S																		T