Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	Q	S	Y	G	R	L	V	S	R	A	A	I	A	A	T	A	M	A	S	L	L	L	L	I	K	I	F	A	W	W	Y	T	G	S	V	S	I	L	A	A	L	V	D	S	L	V	D	I	G	A	S	L	T	N	L	L	V	V
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	Y	S	L	Q	P	A	D	D	N	H	S	F	G	H	G	K	A	E	S	L	A	A	L	A	Q	S	M	F	I	S	G	S	A	L	F	L	F	L	T	G	I	Q	H	L	I	S	P	T	P	M	T	D	P	G	V	G	V	I	V
Secondary structure
SS confidence
Disorder											?		?																																							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	I	V	A	L	I	C	T	I	I	L	V	S	F	Q	R	W	V	V	R	R	T	Q	S	Q	A	V	R	A	D	M	L	H	Y	Q	S	D	V	M	M	N	G	A	I	L	L	A	L	G	L	S	W	Y	G	W	H	R	A	D	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	F	A	L	G	I	G	I	Y	I	L	Y	S	A	L	R	M	G	Y	E	A	V	Q	S	L	L	D	R	A	L	P	D	E	E	R	Q	E	I	I	D	I	V	T	S	W	P	G	V	S	G	A	H	D	L	R	T	R	Q	S	G
Secondary structure
SS confidence
Disorder																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		P	T	R	F	I	Q	I	H	L	E	M	E	D	S	L	P	L	V	Q	A	H	M	V	A	D	Q	V	E	Q	A	I	L	R	R	F	P	G	S	D	V	I	I	H	Q	D	P	C	S	V	V	P	R	E	G	K	R	S	M	L	S
Secondary structure
SS confidence
Disorder																																																			?		?	?		?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2qfi chain B Region: 5 - 289 Aligned: 285 Modelled: 285 Confidence: 100.0% Identity: 100% PDB header:transport protein Chain: B: PDB Molecule:ferrous-iron efflux pump fief; PDBTitle: structure of the zinc transporter yiip Phyre2 PDB 2qfi chain A domain 2 Region: 5 - 208 Aligned: 204 Modelled: 204 Confidence: 100.0% Identity: 100% Fold: Cation efflux protein transmembrane domain-like Superfamily: Cation efflux protein transmembrane domain-like Family: Cation efflux protein transmembrane domain-like Phyre2 PDB 2zzt chain A Region: 207 - 287 Aligned: 80 Modelled: 80 Confidence: 99.6% Identity: 25% PDB header:transport protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the cytosolic domain of the cation2 diffusion facilitator family protein Phyre2 PDB 3byp chain A domain 1 Region: 209 - 287 Aligned: 79 Modelled: 79 Confidence: 99.6% Identity: 34% Fold: Alpha-lytic protease prodomain-like Superfamily: Cation efflux protein cytoplasmic domain-like Family: Cation efflux protein cytoplasmic domain-like Phyre2 PDB 2qfi chain A domain 1 Region: 209 - 289 Aligned: 81 Modelled: 81 Confidence: 99.5% Identity: 100% Fold: Alpha-lytic protease prodomain-like Superfamily: Cation efflux protein cytoplasmic domain-like Family: Cation efflux protein cytoplasmic domain-like Phyre2 PDB 1dlc chain A domain 3 Region: 157 - 223 Aligned: 67 Modelled: 67 Confidence: 58.5% Identity: 18% Fold: Toxins' membrane translocation domains Superfamily: delta-Endotoxin (insectocide), N-terminal domain Family: delta-Endotoxin (insectocide), N-terminal domain Phyre2 PDB 1ghh chain A Region: 243 - 288 Aligned: 46 Modelled: 46 Confidence: 57.6% Identity: 15% Fold: DNA damage-inducible protein DinI Superfamily: DNA damage-inducible protein DinI Family: DNA damage-inducible protein DinI Phyre2 PDB 3qov chain D Region: 215 - 295 Aligned: 81 Modelled: 81 Confidence: 56.2% Identity: 9% PDB header:ligase Chain: D: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution Phyre2 PDB 2y4o chain A Region: 215 - 295 Aligned: 81 Modelled: 81 Confidence: 53.7% Identity: 16% PDB header:ligase Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak2 in complex with phenylacetyl adenylate Phyre2 PDB 3cd0 chain B Region: 211 - 281 Aligned: 71 Modelled: 71 Confidence: 53.3% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:3-hydroxy-3-methylglutaryl-coenzyme a reductase; PDBTitle: thermodynamic and structure guided design of statin hmg-coa2 reductase inhibitors Phyre2 PDB 1ji6 chain A domain 3 Region: 157 - 223 Aligned: 67 Modelled: 67 Confidence: 45.8% Identity: 15% Fold: Toxins' membrane translocation domains Superfamily: delta-Endotoxin (insectocide), N-terminal domain Family: delta-Endotoxin (insectocide), N-terminal domain Phyre2 PDB 1hwj chain B Region: 211 - 281 Aligned: 71 Modelled: 71 Confidence: 45.5% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:hmg-coa reductase; PDBTitle: complex of the catalytic portion of human hmg-coa reductase2 with cerivastatin Phyre2 PDB 1ji6 chain A Region: 157 - 223 Aligned: 67 Modelled: 67 Confidence: 42.2% Identity: 16% PDB header:toxin Chain: A: PDB Molecule:pesticidial crystal protein cry3bb; PDBTitle: crystal structure of the insecticidal bacterial del2 endotoxin cry3bb1 bacillus thuringiensis Phyre2 PDB 2y27 chain B Region: 215 - 297 Aligned: 82 Modelled: 83 Confidence: 41.8% Identity: 12% PDB header:ligase Chain: B: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak1 in complex with atp from2 burkholderia cenocepacia Phyre2 PDB 3rfu chain C Region: 3 - 146 Aligned: 142 Modelled: 144 Confidence: 39.6% Identity: 11% PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase Phyre2 PDB 1f06 chain A domain 2 Region: 219 - 295 Aligned: 69 Modelled: 77 Confidence: 35.8% Identity: 19% Fold: FwdE/GAPDH domain-like Superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family: Dihydrodipicolinate reductase-like Phyre2 PDB 1dqa chain A domain 1 Region: 210 - 281 Aligned: 72 Modelled: 72 Confidence: 35.5% Identity: 14% Fold: Ferredoxin-like Superfamily: NAD-binding domain of HMG-CoA reductase Family: NAD-binding domain of HMG-CoA reductase Phyre2 PDB 3eb7 chain B Region: 157 - 223 Aligned: 67 Modelled: 67 Confidence: 32.0% Identity: 15% PDB header:toxin Chain: B: PDB Molecule:insecticidal delta-endotoxin cry8ea1; PDBTitle: crystal structure of insecticidal delta-endotoxin cry8ea1 from2 bacillus thuringiensis at 2.2 angstroms resolution Phyre2 PDB 1dlc chain A Region: 157 - 223 Aligned: 67 Modelled: 67 Confidence: 31.5% Identity: 18% PDB header:toxin Chain: A: PDB Molecule:delta-endotoxin cryiiia; PDBTitle: crystal structure of insecticidal delta-endotoxin from2 bacillus thuringiensis at 2.5 angstroms resolution Phyre2 PDB 1wh9 chain A Region: 207 - 284 Aligned: 77 Modelled: 78 Confidence: 31.3% Identity: 12% Fold: Alpha-lytic protease prodomain-like Superfamily: Prokaryotic type KH domain (KH-domain type II) Family: Prokaryotic type KH domain (KH-domain type II) Phyre2 1 c2qfiB_ 2 d2qfia2 3 c2zztA_ 4 d3bypa1 5 d2qfia1 6 d1dlca3 7 d1ghha_ 8 c3qovD_ 9 c2y4oA_ 10 c3cd0B_ 11 d1ji6a3 12 c1hwjB_ 13 c1ji6A_ 14 c2y27B_ 15 c3rfuC_ 16 d1f06a2 17 d1dqaa1 18 c3eb7B_ 19 c1dlcA_ 20 d1wh9a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qfiB_ 100.0 100 PDB header:transport protein Chain: B: PDB Molecule:ferrous-iron efflux pump fief; PDBTitle: structure of the zinc transporter yiip 2 d2qfia2 100.0 100 Fold:Cation efflux protein transmembrane domain-like Superfamily:Cation efflux protein transmembrane domain-like Family:Cation efflux protein transmembrane domain-like 3 c2zztA_ 99.6 25 PDB header:transport protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the cytosolic domain of the cation2 diffusion facilitator family protein 4 d3bypa1 99.6 34 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 5 d2qfia1 99.5 100 Fold:Alpha-lytic protease prodomain-like Superfamily:Cation efflux protein cytoplasmic domain-like Family:Cation efflux protein cytoplasmic domain-like 6 d1dlca3 58.5 18 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 7 d1ghha_ 57.6 15 Fold:DNA damage-inducible protein DinI Superfamily:DNA damage-inducible protein DinI Family:DNA damage-inducible protein DinI 8 c3qovD_ 56.2 9 PDB header:ligase Chain: D: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of a hypothetical acyl-coa ligase (bt_0428) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution 9 c2y4oA_ 53.7 16 PDB header:ligase Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak2 in complex with phenylacetyl adenylate 10 c3cd0B_ 53.3 14 PDB header:oxidoreductase Chain: B: PDB Molecule:3-hydroxy-3-methylglutaryl-coenzyme a reductase; PDBTitle: thermodynamic and structure guided design of statin hmg-coa2 reductase inhibitors 11 d1ji6a3 45.8 15 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 12 c1hwjB_ 45.5 14 PDB header:oxidoreductase Chain: B: PDB Molecule:hmg-coa reductase; PDBTitle: complex of the catalytic portion of human hmg-coa reductase2 with cerivastatin 13 c1ji6A_ 42.2 16 PDB header:toxin Chain: A: PDB Molecule:pesticidial crystal protein cry3bb; PDBTitle: crystal structure of the insecticidal bacterial del2 endotoxin cry3bb1 bacillus thuringiensis 14 c2y27B_ 41.8 12 PDB header:ligase Chain: B: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak1 in complex with atp from2 burkholderia cenocepacia 15 c3rfuC_ 39.6 11 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 16 d1f06a2 35.8 19 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:Dihydrodipicolinate reductase-like 17 d1dqaa1 35.5 14 Fold:Ferredoxin-like Superfamily:NAD-binding domain of HMG-CoA reductase Family:NAD-binding domain of HMG-CoA reductase 18 c3eb7B_ 32.0 15 PDB header:toxin Chain: B: PDB Molecule:insecticidal delta-endotoxin cry8ea1; PDBTitle: crystal structure of insecticidal delta-endotoxin cry8ea1 from2 bacillus thuringiensis at 2.2 angstroms resolution 19 c1dlcA_ 31.5 18 PDB header:toxin Chain: A: PDB Molecule:delta-endotoxin cryiiia; PDBTitle: crystal structure of insecticidal delta-endotoxin from2 bacillus thuringiensis at 2.5 angstroms resolution 20 d1wh9a_ 31.3 12 Fold:Alpha-lytic protease prodomain-like Superfamily:Prokaryotic type KH domain (KH-domain type II) Family:Prokaryotic type KH domain (KH-domain type II) 21 d1ib8a2 not modelled 29.7 8 Fold:Alpha-lytic protease prodomain-like Superfamily:YhbC-like, N-terminal domain Family:YhbC-like, N-terminal domain 22 d1u8sa1 not modelled 29.1 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 23 c2jo1A_ not modelled 27.0 9 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 24 c3b64A_ not modelled 24.4 13 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major 25 c1u8sB_ not modelled 21.7 15 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 26 d1uwda_ not modelled 19.3 17 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 27 c2jp3A_ not modelled 18.7 0 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 28 c3abfB_ not modelled 17.4 9 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 29 d1fftb2 not modelled 16.8 15 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 30 d1zpva1 not modelled 16.7 6 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 31 c3laxA_ not modelled 16.3 6 PDB header:ligase Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: the crystal structure of a domain of phenylacetate-coenzyme2 a ligase from bacteroides vulgatus atcc 8482 32 c3eynB_ not modelled 16.1 8 PDB header:ligase Chain: B: PDB Molecule:acyl-coenzyme a synthetase acsm2a; PDBTitle: crystal structure of human acyl-coa synthetase medium-chain2 family member 2a (l64p mutation) in a complex with coa 33 d1u8sa2 not modelled 15.5 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 34 c3etcB_ not modelled 14.8 7 PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 35 c2zxeG_ not modelled 12.8 6 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 36 d1x38a2 not modelled 11.7 25 Fold:Flavodoxin-like Superfamily:Beta-D-glucan exohydrolase, C-terminal domain Family:Beta-D-glucan exohydrolase, C-terminal domain 37 c2ns6A_ not modelled 11.7 17 PDB header:hydrolase Chain: A: PDB Molecule:mobilization protein a; PDBTitle: crystal structure of the minimal relaxase domain of moba2 from plasmid r1162 38 c3kxwA_ not modelled 11.6 9 PDB header:ligase Chain: A: PDB Molecule:saframycin mx1 synthetase b; PDBTitle: the crystal structure of fatty acid amp ligase from legionella2 pneumophila 39 c3hvwA_ not modelled 11.1 13 PDB header:lyase Chain: A: PDB Molecule:diguanylate-cyclase (dgc); PDBTitle: crystal structure of the ggdef domain of the pa2567 protein2 from pseudomonas aeruginosa, northeast structural genomics3 consortium target par365c 40 c2iqcA_ not modelled 9.8 14 PDB header:protein binding Chain: A: PDB Molecule:fanconi anemia group f protein; PDBTitle: crystal structure of human fancf protein that functions in2 the assembly of a dna damage signaling complex 41 d1q8ba_ not modelled 9.8 10 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Hypothetical protein YjcS 42 c3gacD_ not modelled 9.7 23 PDB header:cytokine Chain: D: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: structure of mif with hpp 43 d2cu6a1 not modelled 9.5 16 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:PaaD-like 44 d1rq2a2 not modelled 9.4 18 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 45 d1mlia_ not modelled 9.4 5 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Muconalactone isomerase, MLI 46 d2aala1 not modelled 9.2 13 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:MSAD-like 47 c2x4kB_ not modelled 8.9 7 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa) 48 d1wzua1 not modelled 8.8 19 Fold:NadA-like Superfamily:NadA-like Family:NadA-like 49 c3mb2G_ not modelled 8.3 16 PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 50 c1ex1A_ not modelled 7.9 25 PDB header:hydrolase Chain: A: PDB Molecule:protein (beta-d-glucan exohydrolase isoenzyme exo1); PDBTitle: beta-d-glucan exohydrolase from barley 51 d1lcia_ not modelled 7.7 11 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 52 d1rwua_ not modelled 7.7 8 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:YbeD-like 53 c1rwuA_ not modelled 7.7 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli 54 c3e7wA_ not modelled 7.4 14 PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: crystal structure of dlta: implications for the reaction2 mechanism of non-ribosomal peptide synthetase (nrps)3 adenylation domains 55 c1v55B_ not modelled 7.3 9 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state 56 c3mlcC_ not modelled 7.2 19 PDB header:isomerase Chain: C: PDB Molecule:fg41 malonate semialdehyde decarboxylase; PDBTitle: crystal structure of fg41msad inactivated by 3-chloropropiolate 57 c3m20A_ not modelled 7.0 10 PDB header:isomerase Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative; PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution 58 d1uf0a_ not modelled 6.8 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:Doublecortin (DC) Family:Doublecortin (DC) 59 d1xhja_ not modelled 6.8 11 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 60 c2qs0A_ not modelled 6.7 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:quinolinate synthetase a; PDBTitle: quinolinate synthase from pyrococcus furiosus 61 c3ry0A_ not modelled 6.6 10 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 62 c2zkqc_ not modelled 6.5 13 PDB header:ribosomal protein/rna Chain: C: PDB Molecule:rna expansion segment es4; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 63 c3dptB_ not modelled 6.4 17 PDB header:signaling protein Chain: B: PDB Molecule:rab family protein; PDBTitle: cor domain of rab family protein (roco) 64 c1r7iB_ not modelled 6.4 14 PDB header:oxidoreductase Chain: B: PDB Molecule:3-hydroxy-3-methylglutaryl-coenzyme a reductase; PDBTitle: hmg-coa reductase from p. mevalonii, native structure at 2.2 angstroms2 resolution. 65 c2kz0A_ not modelled 6.4 26 PDB header:transcription Chain: A: PDB Molecule:bola family protein; PDBTitle: solution structure of a bola protein (ech_0303) from ehrlichia2 chaffeensis. seattle structural genomics center for infectious3 disease target ehcha.10365.a 66 c3ibwA_ not modelled 6.3 3 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 67 c2zw2B_ not modelled 6.3 15 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein sts178; PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs) 68 c3nyrA_ not modelled 6.3 18 PDB header:ligase Chain: A: PDB Molecule:malonyl-coa ligase; PDBTitle: malonyl-coa ligase ternary product complex with malonyl-coa and amp2 bound 69 c2dbbA_ not modelled 6.2 11 PDB header:transcriptional regulator Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061; PDBTitle: crystal structure of ph0061 70 d1uxya2 not modelled 6.1 20 Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 71 d2cfxa2 not modelled 6.1 3 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:Lrp/AsnC-like transcriptional regulator C-terminal domain 72 c2qieA_ not modelled 6.1 10 PDB header:transferase Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 73 d1iwga3 not modelled 6.0 8 Fold:Ferredoxin-like Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 74 c3lnoA_ not modelled 6.0 11 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of domain of unknown function duf59 from2 bacillus anthracis 75 d1gyxa_ not modelled 6.0 18 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 76 c3ac0B_ not modelled 6.0 25 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 77 d2vapa2 not modelled 5.9 28 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 78 d2ia7a1 not modelled 5.8 7 Fold:gpW/gp25-like Superfamily:gpW/gp25-like Family:gpW/gp25-like 79 c2op8A_ not modelled 5.8 9 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 80 d1ofua2 not modelled 5.7 21 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 81 d2b3ja1 not modelled 5.7 12 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 82 c2xq2A_ not modelled 5.7 17 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 83 d2i1sa1 not modelled 5.6 15 Fold:MM3350-like Superfamily:MM3350-like Family:MM3350-like 84 c2x41A_ not modelled 5.6 25 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 85 c3brtC_ not modelled 5.5 29 PDB header:transferase/transcription Chain: C: PDB Molecule:inhibitor of nuclear factor kappa-b kinase PDBTitle: nemo/ikk association domain structure 86 c2e1cA_ not modelled 5.4 10 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 87 d1otfa_ not modelled 5.4 18 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 88 d1hp3a_ not modelled 5.4 31 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 89 c3dhvA_ not modelled 5.4 11 PDB header:ligase Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase; PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate 90 c3gdzA_ not modelled 5.3 14 PDB header:ligase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of arginyl-trna synthetase from klebsiella2 pneumoniae subsp. pneumoniae 91 c1s1hC_ not modelled 5.3 13 PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s3; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 92 c1ypxA_ not modelled 5.3 15 PDB header:transferase Chain: A: PDB Molecule:putative vitamin-b12 independent methionine synthase family PDBTitle: crystal structure of the putative vitamin-b12 independent methionine2 synthase from listeria monocytogenes, northeast structural genomics3 target lmr13 93 c2vv5D_ not modelled 5.3 14 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 94 d2atza1 not modelled 5.3 10 Fold:Prim-pol domain Superfamily:Prim-pol domain Family:HP0184-like 95 c1ib8A_ not modelled 5.3 12 PDB header:nucleic acid binding protein Chain: A: PDB Molecule:conserved protein sp14.3; PDBTitle: solution structure and function of a conserved protein2 sp14.3 encoded by an essential streptococcus pneumoniae3 gene 96 c2khuA_ not modelled 5.2 7 PDB header:transferase/protein binding Chain: A: PDB Molecule:immunoglobulin g-binding protein g, dna PDBTitle: solution structure of the ubiquitin-binding motif of human2 polymerase iota 97 c3fwtA_ not modelled 5.0 10 PDB header:cytokine Chain: A: PDB Molecule:macrophage migration inhibitory factor-like PDBTitle: crystal structure of leishmania major mif2 98 c3lk6A_ not modelled 5.0 27 PDB header:hydrolase Chain: A: PDB Molecule:lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis 99 d1g9pa_ not modelled 5.0 31 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0