PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1v55B_

Fold library id	PDB Header	Molecule	Title
c1v55B_	PDB header: oxidoreductase	Chain: B: PDB Molecule: cytochrome c oxidase polypeptide ii;	PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state

Links to external resources
Added to library: Tue Mar 16 14:23:52 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A Y P M Q L G F Q D A T S P I M E E L L H F H D H T L M I V F L I S S L V L Y I I S L M L T T K L T H T S T M D A Q E V E T I W T I L P A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S T S
S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I L I L I A L P S L R I L Y M M D E I N N P S L T V K T M G H Q W Y W S Y E Y T D Y E D L S F D S Y M I P T S E L K P G E L R L L E V D N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T
S S S
B
G G G
T T
T T T
B S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V V L P M E M T I R M L V S S E D V L H S W A V P S L G L K T D A I P G R L N Q T T L M S S R P G L Y Y G Q C S E I C G S N H S F M P I V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S S
G G G T
T T
S S
S
S T T G G G

. . . . . . . . . 220 . . . . . .

Sequence E L V P L K Y F E K W S A S M L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	Y	P	M	Q	L	G	F	Q	D	A	T	S	P	I	M	E	E	L	L	H	F	H	D	H	T	L	M	I	V	F	L	I	S	S	L	V	L	Y	I	I	S	L	M	L	T	T	K	L	T	H	T	S	T	M	D	A	Q	E	V	E	T	I	W	T	I	L	P	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T			S					S	S																																T	S		S					S					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	L	I	L	I	A	L	P	S	L	R	I	L	Y	M	M	D	E	I	N	N	P	S	L	T	V	K	T	M	G	H	Q	W	Y	W	S	Y	E	Y	T	D	Y	E	D	L	S	F	D	S	Y	M	I	P	T	S	E	L	K	P	G	E	L	R	L	L	E	V	D	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S					S									T	T								S	S	S								B			G	G	G			T	T			T	T	T		B	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	V	L	P	M	E	M	T	I	R	M	L	V	S	S	E	D	V	L	H	S	W	A	V	P	S	L	G	L	K	T	D	A	I	P	G	R	L	N	Q	T	T	L	M	S	S	R	P	G	L	Y	Y	G	Q	C	S	E	I	C	G	S	N	H	S	F	M	P	I	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S									S	S	S							G	G	G	T							T	T										S	S										S			S	T	T	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	E	L	V	P	L	K	Y	F	E	K	W	S	A	S	M	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T