PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1ypxA_

Fold library id	PDB Header	Molecule	Title
c1ypxA_	PDB header: transferase	Chain: A: PDB Molecule: putative vitamin-b12 independent methionine	PDBTitle: crystal structure of the putative vitamin-b12 independent2 methionine synthase from listeria monocytogenes, northeast3 structural genomics target lmr13

Links to external resources
Added to library: Tue Mar 16 12:43:18 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N Q V A P F Y A D H V G S I L R T K G I K D A R E K F Q S G E I T A L E L R K I E N T E I K Y I V E K Q K E V G L K S I T D G E F R R W H F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S B
S
T S S
T
S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D F L E N L D G V E G Y S V K I T G P I D F T T H P F I E D F I F L K E A V G D N H V A K Q T I P S P A X L H Y R G D I E Y Q P Y L D D A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S
T
S S S
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K F A N D L A T A Y Q K A I Q A F Y D A G C R Y L Q L D D T S W S Y L C S D E G F D P E T L Q E T Y K N L I N E A I K H K P A D X V I T X H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S
S T T T T T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence I C R G G Y G P V A E T L F G K L N I D G F F L E Y D N E R F A P L K Y V T R P D L K I V L G L I T S K T G E E D E A A I K A R I E E A S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G T T
S
S
T T
T T
S S S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . .

Sequence I V P L S Q L R L S P Q C G F A T E E E Q W D K L R Y V V R L A N D I W G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	Q	V	A	P	F	Y	A	D	H	V	G	S	I	L	R	T	K	G	I	K	D	A	R	E	K	F	Q	S	G	E	I	T	A	L	E	L	R	K	I	E	N	T	E	I	K	Y	I	V	E	K	Q	K	E	V	G	L	K	S	I	T	D	G	E	F	R	R	W	H	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S		S	B				S																		T	S	S																								T		S					T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	F	L	E	N	L	D	G	V	E	G	Y	S	V	K	I	T	G	P	I	D	F	T	T	H	P	F	I	E	D	F	I	F	L	K	E	A	V	G	D	N	H	V	A	K	Q	T	I	P	S	P	A	X	L	H	Y	R	G	D	I	E	Y	Q	P	Y	L	D	D	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S																	S			T														S	S	S									T											S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	F	A	N	D	L	A	T	A	Y	Q	K	A	I	Q	A	F	Y	D	A	G	C	R	Y	L	Q	L	D	D	T	S	W	S	Y	L	C	S	D	E	G	F	D	P	E	T	L	Q	E	T	Y	K	N	L	I	N	E	A	I	K	H	K	P	A	D	X	V	I	T	X	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T														T	T	S					S	T	T	T													T	T	T			T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	I	C	R	G	G	Y	G	P	V	A	E	T	L	F	G	K	L	N	I	D	G	F	F	L	E	Y	D	N	E	R	F	A	P	L	K	Y	V	T	R	P	D	L	K	I	V	L	G	L	I	T	S	K	T	G	E	E	D	E	A	A	I	K	A	R	I	E	E	A	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	G	G	G					T	T				S								S					T	T						T	T										S	S	S					S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Sequence	I	V	P	L	S	Q	L	R	L	S	P	Q	C	G	F	A	T	E	E	E	Q	W	D	K	L	R	Y	V	V	R	L	A	N	D	I	W	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S		G	G	G						S	S																							S