Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3dhvA_

Fold library idPDB HeaderMoleculeTitle
c3dhvA_PDB header: ligaseChain: A: PDB Molecule: d-alanine-poly(phosphoribitol) ligase;PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate


Added to library: Tue Mar 16 14:29:11 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)
STTSTTSTT



SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAV
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP) TT

TTS
T

SS


SS

SSTTTT



GGGS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KGDENFYIIYTSPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP)
TTS

TT

SS

S
TTSGGGTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFP
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)
ST


TSTT
STTTSTT


SS



T
 .........290.........300.........310.........320.........330.........340.........350
Sequence KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVS
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP) T


GGGSS
S


SS



TT

SSSSB

TT

STTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEG
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) S
BTT
TTTTGGG
SS
STT
 .........430.........440.........450.........460.........470.........480.........490
Sequence AVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRK
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) SSSS
S


SSTTS
GGGS
S
S


B
TTSSB
 ........
Sequence KLLSEVTA
Predicted secondary structure

SS confidence







Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D