PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1s1hC_

Fold library id	PDB Header	Molecule	Title
c1s1hC_	PDB header: ribosome	Chain: C: PDB Molecule: 40s ribosomal protein s3;	PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.

Links to external resources
Added to library: Tue Mar 16 13:46:34 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S K K R K L V A D G V F Y A E L N E F F T R E L A E E G Y S G V E V R V T P T K T E V I I R A T R T Q D V L G E N G R R I N E L T L L V Q K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T T
B S S S
B
S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R F K Y A P G T I V L Y A E R V Q D R G L S A V A Q A E S M K F K L L N G L A I R R A A Y G V V R Y V M E S G A K G C E V V V S G K L R A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T
B
S
G G G
T
S S
S
S
G G G S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . .

Sequence R A K A M K F A D G F L I H S G Q P V N D F I D T A T R H V L M R Q G V L G I K V K I M R D P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
T T S S S
T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	K	K	R	K	L	V	A	D	G	V	F	Y	A	E	L	N	E	F	F	T	R	E	L	A	E	E	G	Y	S	G	V	E	V	R	V	T	P	T	K	T	E	V	I	I	R	A	T	R	T	Q	D	V	L	G	E	N	G	R	R	I	N	E	L	T	L	L	V	Q	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T																			T	T	T	T									B	S	S	S		B							S								G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	F	K	Y	A	P	G	T	I	V	L	Y	A	E	R	V	Q	D	R	G	L	S	A	V	A	Q	A	E	S	M	K	F	K	L	L	N	G	L	A	I	R	R	A	A	Y	G	V	V	R	Y	V	M	E	S	G	A	K	G	C	E	V	V	V	S	G	K	L	R	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S		T	T	T			B								S		G	G	G																T																	S	S		S								S		G	G	G	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Sequence	R	A	K	A	M	K	F	A	D	G	F	L	I	H	S	G	Q	P	V	N	D	F	I	D	T	A	T	R	H	V	L	M	R	Q	G	V	L	G	I	K	V	K	I	M	R	D	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				B								T	T	S	S	S		T	T													S	S