PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2zkqc_

Fold library id	PDB Header	Molecule	Title
c2zkqc_	PDB header: ribosomal protein/rna	Chain: C: PDB Molecule: rna expansion segment es4;	PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map

Links to external resources
Added to library: Tue Mar 16 13:59:06 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A V Q I S K K R K F V A D G I F K A E L N E F L T R E L A E D G Y S G V E V R V T P T R T E I I I L A T R T Q N V L G E K G R R I R E L T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T T T
T T T
B T T
S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V V Q K R F G F P E G S V E L Y A E K V A T R G L C A I A Q A E S L R Y K L L G G L A V R R A C Y G V L R F I M E S G A K G C E V V V S G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T
S
G G G
T
S S
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . .

Sequence L R G Q R A K S M K F V D G L M I H S G D P V N Y Y V D T A V R H V L L R Q G V L G I K V K I M L P W D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S S
B
S S S S T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	V	Q	I	S	K	K	R	K	F	V	A	D	G	I	F	K	A	E	L	N	E	F	L	T	R	E	L	A	E	D	G	Y	S	G	V	E	V	R	V	T	P	T	R	T	E	I	I	I	L	A	T	R	T	Q	N	V	L	G	E	K	G	R	R	I	R	E	L	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B					T	T	T																			T		T	T	T							B			T	T									S								G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	V	Q	K	R	F	G	F	P	E	G	S	V	E	L	Y	A	E	K	V	A	T	R	G	L	C	A	I	A	Q	A	E	S	L	R	Y	K	L	L	G	G	L	A	V	R	R	A	C	Y	G	V	L	R	F	I	M	E	S	G	A	K	G	C	E	V	V	V	S	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S		T	T	T											S		G	G	G																T																	S	S		S								S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Sequence	L	R	G	Q	R	A	K	S	M	K	F	V	D	G	L	M	I	H	S	G	D	P	V	N	Y	Y	V	D	T	A	V	R	H	V	L	L	R	Q	G	V	L	G	I	K	V	K	I	M	L	P	W	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	S	S				B						S	S					S	S	T	T													S	S