Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP27127
DateThu Jan 5 11:43:14 GMT 2012
Unique Job ID5c45fc5e4fc02c32

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3c4vB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.
Confidence and coverage
Confidence:100.0% Coverage: 99%
355 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKIAFIGEAVSGFGGMETVIRDVITTFRQQHIQSEMFFFCRNDKMDKGWLEGIKYSCSFS
Secondary structure 
























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Disorder  ?

























































?
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   .........70.........80.........90.........100.........110.........120
Sequence  NIRLGFLRRAKHIHALSKWLQEYQPDIVICIDVISCLFAAKARKKSGIDMPVFSWPHFSL
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Disorder 
????????


















































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   .........130.........140.........150.........160.........170.........180
Sequence  DHKKHAEYITCADYHLAISSGIKQQMINRGVAESTINVIFNPVETKDSVIPAPEEGETAT
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????????




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   .........190.........200.........210.........220.........230.........240
Sequence  FIYVGRMKFEGQKRVKDLLDGLSQAKGNWKLHVLGDGSDFEKCQAYGRELNIDDRIVWYG
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?
?







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   .........250.........260.........270.........280.........290.........300
Sequence  WQQYPWELVQQDIEKVSALLLTSSFEGFPMTLLEALSWGIPCISADCVSGPADIIQPDVN
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   .........310.........320.........330.........340.........350.........
Sequence  GHLYQPGDIAGFVTLLNKYIAGEIHIEHEKIPASIDEFYQSKYYDRLHKVIISAISRRK
Secondary structure 










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Disorder 























































???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3c4v chain B

3D model

Region: 1 - 358
Aligned: 355
Modelled: 358
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.

Phyre2

PDB 2bis chain A domain 1

3D model

Region: 1 - 358
Aligned: 356
Modelled: 357
Confidence: 100.0%
Identity: 20%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 2gej chain A

3D model

Region: 1 - 359
Aligned: 347
Modelled: 359
Confidence: 100.0%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man

Phyre2

PDB 2jjm chain H

3D model

Region: 1 - 355
Aligned: 342
Modelled: 355
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.

Phyre2

PDB 2qzs chain A

3D model

Region: 1 - 354
Aligned: 352
Modelled: 354
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)

Phyre2

PDB 1rzu chain A

3D model

Region: 1 - 356
Aligned: 354
Modelled: 356
Confidence: 100.0%
Identity: 13%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 2r60 chain A

3D model

Region: 1 - 357
Aligned: 356
Modelled: 357
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii

Phyre2

PDB 3oy2 chain A

3D model

Region: 1 - 356
Aligned: 352
Modelled: 356
Confidence: 100.0%
Identity: 13%
PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a

Phyre2

PDB 3oka chain A

3D model

Region: 2 - 353
Aligned: 346
Modelled: 351
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)

Phyre2

PDB 2iw1 chain A domain 1

3D model

Region: 3 - 352
Aligned: 344
Modelled: 350
Confidence: 100.0%
Identity: 14%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Glycosyl transferases group 1

Phyre2

PDB 3s29 chain C

3D model

Region: 2 - 352
Aligned: 350
Modelled: 351
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.

Phyre2

PDB 2xmp chain B

3D model

Region: 1 - 354
Aligned: 346
Modelled: 354
Confidence: 100.0%
Identity: 14%
PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp

Phyre2

PDB 2x6r chain A

3D model

Region: 1 - 354
Aligned: 346
Modelled: 354
Confidence: 100.0%
Identity: 15%
PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose

Phyre2

PDB 2x0d chain A

3D model

Region: 1 - 323
Aligned: 316
Modelled: 322
Confidence: 100.0%
Identity: 9%
PDB header:transferase
Chain: A: PDB Molecule:wsaf;
PDBTitle: apo structure of wsaf

Phyre2

PDB 2iv3 chain B

3D model

Region: 1 - 359
Aligned: 318
Modelled: 331
Confidence: 100.0%
Identity: 12%
PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis

Phyre2

PDB 1uqu chain B

3D model

Region: 2 - 357
Aligned: 352
Modelled: 356
Confidence: 100.0%
Identity: 15%
PDB header:synthase
Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase;
PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.

Phyre2

PDB 3o3c chain D

3D model

Region: 2 - 359
Aligned: 356
Modelled: 358
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glycogen synthase basal state udp complex

Phyre2

PDB 3nb0 chain A

3D model

Region: 2 - 359
Aligned: 356
Modelled: 358
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase

Phyre2

PDB 1uqt chain A

3D model

Region: 2 - 357
Aligned: 352
Modelled: 356
Confidence: 100.0%
Identity: 14%
Fold: UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
Family: Trehalose-6-phosphate synthase, OtsA

Phyre2

PDB 3ot5 chain D

3D model

Region: 1 - 357
Aligned: 344
Modelled: 350
Confidence: 100.0%
Identity: 11%
PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes

Phyre2
1

c3c4vB_
2

d2bisa1
3

c2gejA_
4

c2jjmH_
5

c2qzsA_
6

d1rzua_
7

c2r60A_
8

c3oy2A_
9

c3okaA_
10

d2iw1a1
11

c3s29C_
12

c2xmpB_
13

c2x6rA_
14

c2x0dA_
15

c2iv3B_
16

c1uquB_
17

c3o3cD_
18

c3nb0A_
19

d1uqta_
20

c3ot5D_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3c4vB_



100.0 15 PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.
2d2bisa1



100.0 20 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
3c2gejA_



100.0 11 PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man
4c2jjmH_



100.0 17 PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.
5c2qzsA_



100.0 15 PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp2 and glucose(wtgsb)
6d1rzua_



100.0 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
7c2r60A_



100.0 17 PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
8c3oy2A_



100.0 13 PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a
9c3okaA_



100.0 16 PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
10d2iw1a1



100.0 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
11c3s29C_



100.0 18 PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.
12c2xmpB_



100.0 14 PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp
13c2x6rA_



100.0 15 PDB header:isomerase
Chain: A: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret from p.2 horikoshi produced by soaking in trehalose
14c2x0dA_



100.0 9 PDB header:transferase
Chain: A: PDB Molecule:wsaf;
PDBTitle: apo structure of wsaf
15c2iv3B_



100.0 12 PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis
16c1uquB_



100.0 15 PDB header:synthase
Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase;
PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose.
17c3o3cD_



100.0 16 PDB header:transferase
Chain: D: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glycogen synthase basal state udp complex
18c3nb0A_



100.0 14 PDB header:transferase
Chain: A: PDB Molecule:glycogen [starch] synthase isoform 2;
PDBTitle: glucose-6-phosphate activated form of yeast glycogen synthase
19d1uqta_



100.0 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Trehalose-6-phosphate synthase, OtsA
20c3ot5D_



100.0 11 PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes
21c3dzcA_



not modelled 100.0 10 PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae.
22c3rhzB_



not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:nucleotide sugar synthetase-like protein;
PDBTitle: structure and functional analysis of a new subfamily of2 glycosyltransferases required for glycosylation of serine-rich3 streptococcal adhesions
23d1f6da_



not modelled 100.0 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
24c2q6vA_



not modelled 99.9 12 PDB header:transferase
Chain: A: PDB Molecule:glucuronosyltransferase gumk;
PDBTitle: crystal structure of gumk in complex with udp
25d1v4va_



not modelled 99.9 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
26c2xcuC_



not modelled 99.9 11 PDB header:transferase
Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase;
PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp
27d1o6ca_



not modelled 99.9 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
28d1f0ka_



not modelled 99.9 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Peptidoglycan biosynthesis glycosyltransferase MurG
29c3ia7A_



not modelled 99.9 11 PDB header:transferase
Chain: A: PDB Molecule:calg4;
PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase
30c3iaaB_



not modelled 99.9 14 PDB header:transferase
Chain: B: PDB Molecule:calg2;
PDBTitle: crystal structure of calg2, calicheamicin glycosyltransferase, tdp2 bound form
31c3othB_



not modelled 99.8 12 PDB header:transferase/antibiotic
Chain: B: PDB Molecule:calg1;
PDBTitle: crystal structure of calg1, calicheamicin glycostyltransferase, tdp2 and calicheamicin alpha3i bound form
32c2p6pB_



not modelled 99.8 13 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
33d2f9fa1



not modelled 99.8 17 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
34c2iyaB_



not modelled 99.8 10 PDB header:transferase
Chain: B: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
35c2iyfA_



not modelled 99.8 12 PDB header:transferase
Chain: A: PDB Molecule:oleandomycin glycosyltransferase;
PDBTitle: the crystal structure of macrolide glycosyltransferases: a2 blueprint for antibiotic engineering
36c2vsnB_



not modelled 99.7 11 PDB header:transferase
Chain: B: PDB Molecule:xcogt;
PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
37d2bfwa1



not modelled 99.6 25 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
38c3qhpB_



not modelled 99.6 13 PDB header:transferase
Chain: B: PDB Molecule:type 1 capsular polysaccharide biosynthesis protein j
PDBTitle: crystal structure of the catalytic domain of cholesterol-alpha-2 glucosyltransferase from helicobacter pylori
39d1iira_



not modelled 99.6 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
40c3d0qB_



not modelled 99.6 13 PDB header:transferase
Chain: B: PDB Molecule:protein calg3;
PDBTitle: crystal structure of calg3 from micromonospora echinospora determined2 in space group i222
41d1pn3a_



not modelled 99.5 15 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
42d1rrva_



not modelled 99.5 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Gtf glycosyltransferase
43c3pe3D_



not modelled 99.5 11 PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
44d2c1xa1



not modelled 98.6 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
45d2acva1



not modelled 98.6 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
46c3hbjA_



not modelled 98.5 13 PDB header:transferase
Chain: A: PDB Molecule:flavonoid 3-o-glucosyltransferase;
PDBTitle: structure of ugt78g1 complexed with udp
47c3hbmA_



not modelled 98.3 12 PDB header:hydrolase
Chain: A: PDB Molecule:udp-sugar hydrolase;
PDBTitle: crystal structure of pseg from campylobacter jejuni
48d2pq6a1



not modelled 98.2 12 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
49c3l7mC_



not modelled 97.9 10 PDB header:structural protein
Chain: C: PDB Molecule:teichoic acid biosynthesis protein f;
PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a
50d2vcha1



not modelled 97.9 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
51c2h1fB_



not modelled 97.7 10 PDB header:transferase
Chain: B: PDB Molecule:lipopolysaccharide heptosyltransferase-1;
PDBTitle: e. coli heptosyltransferase waac with adp
52c3q3hA_



not modelled 97.5 7 PDB header:transferase
Chain: A: PDB Molecule:hmw1c-like glycosyltransferase;
PDBTitle: crystal structure of the actinobacillus pleuropneumoniae hmw1c2 glycosyltransferase in complex with udp-glc
53c3ddsB_



not modelled 96.8 13 PDB header:transferase
Chain: B: PDB Molecule:glycogen phosphorylase, liver form;
PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261
54c2c4mA_



not modelled 96.6 12 PDB header:transferase
Chain: A: PDB Molecule:glycogen phosphorylase;
PDBTitle: starch phosphorylase: structural studies explain oxyanion-2 dependent kinetic stability and regulatory control.
55d1pswa_



not modelled 96.5 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:ADP-heptose LPS heptosyltransferase II
56d1ygpa_



not modelled 96.0 13 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
57d2gj4a1



not modelled 96.0 14 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
58c2o6lA_



not modelled 95.6 11 PDB header:transferase
Chain: A: PDB Molecule:udp-glucuronosyltransferase 2b7;
PDBTitle: crystal structure of the udp-glucuronic acid binding domain2 of the human drug metabolizing udp-glucuronosyltransferase3 2b7
59d2atia1



not modelled 95.5 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
60c2ixdB_



not modelled 95.4 20 PDB header:hydrolase
Chain: B: PDB Molecule:lmbe-related protein;
PDBTitle: crystal structure of the putative deacetylase bc1534 from2 bacilus cereus
61c3tovB_



not modelled 95.4 8 PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 9;
PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008
62d1l5wa_



not modelled 94.7 10 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
63d1uana_



not modelled 94.6 17 Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
64d1ydga_



not modelled 93.4 10 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
65d2d1pa1



not modelled 92.2 10 Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrEF-like
66d2hy5a1



not modelled 91.3 12 Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrEF-like
67d1s3ia2



not modelled 89.6 15 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
68c3m2pD_



not modelled 89.4 19 PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 4-epimerase;
PDBTitle: the crystal structure of udp-n-acetylglucosamine 4-epimerase2 from bacillus cereus
69d1udca_



not modelled 89.4 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
70c1y6gB_



not modelled 89.3 13 PDB header:transferase/dna
Chain: B: PDB Molecule:dna alpha-glucosyltransferase;
PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution
71c3icpA_



not modelled 89.3 10 PDB header:isomerase
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of udp-galactose 4-epimerase
72c1gshA_



not modelled 89.2 2 PDB header:glutathione biosynthesis ligase
Chain: A: PDB Molecule:glutathione biosynthetic ligase;
PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5
73d1vl0a_



not modelled 89.2 18 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
74d1jaya_



not modelled 89.1 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
75c2wooC_



not modelled 88.8 18 PDB header:hydrolase
Chain: C: PDB Molecule:atpase get3;
PDBTitle: nucleotide-free form of s. pombe get3
76c2x4gA_



not modelled 88.3 14 PDB header:isomerase
Chain: A: PDB Molecule:nucleoside-diphosphate-sugar epimerase;
PDBTitle: crystal structure of pa4631, a nucleoside-diphosphate-sugar2 epimerase from pseudomonas aeruginosa
77d1gsaa1



not modelled 88.2 2 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Prokaryotic glutathione synthetase, N-terminal domain
78c2pk3B_



not modelled 88.2 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase;
PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
79c2pzlB_



not modelled 88.1 18 PDB header:sugar binding protein
Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp
80c3ibgF_



not modelled 88.1 15 PDB header:hydrolase
Chain: F: PDB Molecule:atpase, subunit of the get complex;
PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp
81c3lcmB_



not modelled 88.1 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159
82c2p5uC_



not modelled 87.5 10 PDB header:isomerase
Chain: C: PDB Molecule:udp-glucose 4-epimerase;
PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad
83d2blla1



not modelled 86.3 4 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
84c2q1wC_



not modelled 86.2 10 PDB header:sugar binding protein
Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+
85c2zkiH_



not modelled 86.1 7 PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
86d2c5aa1



not modelled 85.6 11 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
87c2ggsB_



not modelled 84.7 8 PDB header:oxidoreductase
Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose
PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii
88c2ofpB_



not modelled 84.7 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:ketopantoate reductase;
PDBTitle: crystal structure of escherichia coli ketopantoate2 reductase in a ternary complex with nadp+ and pantoate
89d1txga2



not modelled 84.6 6 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
90d1n2sa_



not modelled 84.5 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
91c2iz6A_



not modelled 84.4 14 PDB header:metal transport
Chain: A: PDB Molecule:molybdenum cofactor carrier protein;
PDBTitle: structure of the chlamydomonas rheinhardtii moco carrier2 protein
92d2f1ka2



not modelled 83.1 19 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
93c3kjgB_



not modelled 82.9 20 PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1
94c3fmfA_



not modelled 82.8 22 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate
95d1kewa_



not modelled 82.6 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
96d2hy5b1



not modelled 82.0 10 Fold:DsrEFH-like
Superfamily:DsrEFH-like
Family:DsrEF-like
97c3sc6F_



not modelled 81.8 18 PDB header:oxidoreductase
Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase;
PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp
98c1ks9A_



not modelled 81.7 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:2-dehydropantoate 2-reductase;
PDBTitle: ketopantoate reductase from escherichia coli
99c2hunB_



not modelled 81.5 22 PDB header:lyase
Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase;
PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3
100d1ks9a2



not modelled 81.5 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
101c3oh8A_



not modelled 80.3 11 PDB header:isomerase
Chain: A: PDB Molecule:nucleoside-diphosphate sugar epimerase (sula family);
PDBTitle: crystal structure of the nucleoside-diphosphate sugar epimerase from2 corynebacterium glutamicum. northeast structural genomics consortium3 target cgr91
102c1hyqA_



not modelled 80.1 9 PDB header:cell cycle
Chain: A: PDB Molecule:cell division inhibitor (mind-1);
PDBTitle: mind bacterial cell division regulator from a. fulgidus
103d1hyqa_



not modelled 80.1 9 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
104c2f1kD_



not modelled 79.6 21 PDB header:oxidoreductase
Chain: D: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of synechocystis arogenate dehydrogenase
105d1qrda_



not modelled 78.9 0 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
106d1rtta_



not modelled 78.8 8 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
107d1fjha_



not modelled 78.8 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
108d2bw0a2



not modelled 78.3 15 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
109d1mv8a2



not modelled 77.9 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
110c3g17H_



not modelled 77.4 18 PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:similar to 2-dehydropantoate 2-reductase;
PDBTitle: structure of putative 2-dehydropantoate 2-reductase from2 staphylococcus aureus
111d2fzva1



not modelled 77.4 6 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
112c3l4bG_



not modelled 75.9 9 PDB header:transport protein
Chain: G: PDB Molecule:trka k+ channel protien tm1088b;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
113d1bxka_



not modelled 75.6 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
114d2blna2



not modelled 74.7 12 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
115d1lssa_



not modelled 74.4 9 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
116c1txgA_



not modelled 74.0 6 PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+];
PDBTitle: structure of glycerol-3-phosphate dehydrogenase from archaeoglobus2 fulgidus
117c3dojA_



not modelled 74.0 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:dehydrogenase-like protein;
PDBTitle: structure of glyoxylate reductase 1 from arabidopsis2 (atglyr1)
118d1ycga1



not modelled 73.8 10 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
119d1oc2a_



not modelled 73.4 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
120d1pgja2



not modelled 73.1 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0