Fold library entry viewer: d1ygpa_

Added to library: Tue Mar 16 13:30:35 2010
Links to external resources

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	R	R	L	T	G	F	L	P	Q	E	I	K	S	I	D	T	M	I	P	L	L	S	R	A	L	W	N	K	H	Q	V	K	K	F	N	K	A	E	D	F	Q	D	R	F	I	D	H	V	E	T	T	L	A	R	S	L	Y	N	C	D	D	M	V	A	Y	E	A	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S														S											T							S														T	T	S				G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	S	I	R	D	N	L	V	I	D	W	N	K	T	Q	Q	K	F	T	T	R	D	P	K	R	V	Y	Y	L	S	L	E	F	L	M	G	R	A	L	D	N	A	L	I	N	M	K	I	P	R	E	M	I	K	G	A	L	D	E	L	G	F	K	L	E	D	V	L	D	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															S					B									S																T								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	P	D	A	G	L	G	N	G	G	L	G	R	L	A	A	C	F	V	D	S	M	A	T	E	G	I	P	A	W	G	Y	G	L	R	Y	E	Y	G	I	F	A	Q	K	I	I	D	G	Y	Q	V	E	T	P	D	Y	W	L	N	S	G	N	P	W	E	I	E	R	N	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				B		S			S																T	T											S	S		S							T	T									T	T	T	T			T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	Q	I	P	V	T	F	Y	G	Y	V	D	R	P	T	T	L	S	A	S	Q	W	I	G	G	E	R	V	L	A	V	A	Y	D	F	P	V	P	G	F	K	T	S	N	V	N	N	L	R	L	W	Q	A	R	P	T	T	E	F	D	L	N	K	F	N	N	G	D	Y	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S								T	T	S							S															S	S															S		S								T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	N	S	V	A	Q	Q	Q	R	A	E	S	I	T	A	V	L	Y	P	N	D	N	F	A	Q	G	K	E	L	R	L	K	Q	Q	Y	F	W	C	A	A	S	L	H	D	I	L	R	R	F	K	K	S	K	R	P	W	T	E	F	P	D	Q	V	A	I	Q	L	N	D	T	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T												S	S	S				S	S																														T			G	G	G											S	S	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	P	T	L	A	I	V	E	L	Q	R	V	L	V	D	L	E	K	L	D	W	H	E	A	W	D	I	V	T	K	T	F	A	Y	T	N	H	T	V	M	Q	E	A	L	E	K	W	P	R	R	L	F	G	H	L	L	P	R	H	L	E	I	I	Y	D	I	N	W	F	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T													T	T																							S	G	G	G	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	E	D	V	A	K	K	F	P	K	D	V	D	L	L	S	R	I	S	I	I	E	E	N	S	P	E	R	Q	I	R	M	A	F	L	A	I	V	G	S	H	K	V	N	G	V	V	E	L	H	S	E	L	I	K	T	T	I	F	K	D	F	I	K	F	Y	G	P	S	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	T	T		T								S					S	S	S																			S	S										T	T	T									G	G	G
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	V	N	V	T	N	G	I	T	P	R	R	W	L	K	Q	A	N	P	S	L	A	K	L	I	S	E	T	L	N	D	P	T	E	E	Y	L	L	D	M	A	K	L	T	Q	L	E	K	Y	V	E	D	K	E	F	L	K	K	W	N	Q	V	K	L	N	N	K	I	R	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							B						T	T	T	T												T	T		T	T		G	G	G	T		G	G	G	G	G	G	G	G	G	G	G	G		T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	D	L	I	K	K	E	N	D	G	V	D	I	I	N	R	E	Y	L	D	D	T	L	F	D	M	Q	V	K	R	I	H	E	Y	K	R	Q	Q	L	N	V	F	G	I	I	Y	R	Y	L	A	M	K	N	M	L	K	N	G	A	S	I	E	E	V	A	R	K	Y	P	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	T				S		S	T	T	G	G	G								S				G	G	G	T																					T	T										S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	V	S	I	F	G	G	K	S	A	P	G	Y	Y	M	A	K	L	I	I	K	L	I	N	C	V	A	D	I	V	N	N	D	E	S	I	E	H	L	L	K	V	V	F	V	A	D	Y	N	V	S	K	A	E	I	I	I	P	A	S	D	L	S	E	H	I	S	T	A	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T																			T	T		G	G	G	T	T	S							T	T										G	G	G		S								T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	E	A	S	G	T	S	N	M	K	F	V	M	N	G	G	L	I	I	G	T	V	D	G	A	N	V	E	I	T	R	E	I	G	E	D	N	V	F	L	F	G	N	L	S	E	N	V	E	E	L	R	Y	N	H	Q	Y	H	P	Q	D	L	P	S	S	L	D	S	V	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S										T	T	T							S		T											G	G	G	S				S																S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	Y	I	E	Q	F	S	P	E	N	P	N	E	F	K	P	L	V	D	S	I	K	Y	H	G	D	Y	Y	L	V	S	D	D	F	E	S	Y	L	A	T	H	E	L	V	D	Q	E	F	H	N	Q	R	S	E	W	L	K	K	S	V	L	S	L	A	N	V	G	F	F	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T					T	T	S	T	T	T	T										S	T	T	T	T																																							G	G	G	B
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.
Sequence	D	R	C	I	E	E	Y	S	D	T	I	W	N	V	E	P	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T						-

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PDB structure

FASTA sequence

Hidden Markov model

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