PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3l4bG_

Fold library id	PDB Header	Molecule	Title
c3l4bG_	PDB header: transport protein	Chain: G: PDB Molecule: trka k+ channel protien tm1088b;	PDBTitle: crystal structure of an octomeric two-subunit trka k+2 channel ring gating assembly, tm1088a:tm1088b, from3 thermotoga maritima

Links to external resources
Added to library: Sat Aug 28 22:21:27 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K V I I I G G E T T A Y Y L A R S M L S R K Y G V V I I N K D R E L C E E F A K K L K A T I I H G D G S H K E I L R D A E V S K N D V V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S S S
T T S T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I L T P R D E V N L F I A Q L V M K D F G V K R V V S L V N D P G N M E I F K K M G I T T V L N L T T L I T N T V E A L I F P D E F S S I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T S
S G G G T
T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P L E Q G I E F L S V D S P V V G K K L K D L P L P R D S I I A A I V R G G V L V V P R G D T E I L S D K L Y V I V S A E A K E T V E E T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S S T T
B T T T S
T T S S S
T T
B
G G G

.

Sequence L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	V	I	I	I	G	G	E	T	T	A	Y	Y	L	A	R	S	M	L	S	R	K	Y	G	V	V	I	I	N	K	D	R	E	L	C	E	E	F	A	K	K	L	K	A	T	I	I	H	G	D	G	S	H	K	E	I	L	R	D	A	E	V	S	K	N	D	V	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T								S												S	S	S					S		T	T	S								T			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	L	T	P	R	D	E	V	N	L	F	I	A	Q	L	V	M	K	D	F	G	V	K	R	V	V	S	L	V	N	D	P	G	N	M	E	I	F	K	K	M	G	I	T	T	V	L	N	L	T	T	L	I	T	N	T	V	E	A	L	I	F	P	D	E	F	S	S	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S															T	S											S	G	G	G								T																					T	T	S					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	L	E	Q	G	I	E	F	L	S	V	D	S	P	V	V	G	K	K	L	K	D	L	P	L	P	R	D	S	I	I	A	A	I	V	R	G	G	V	L	V	V	P	R	G	D	T	E	I	L	S	D	K	L	Y	V	I	V	S	A	E	A	K	E	T	V	E	E	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T									S	S	T	T		B	T	T	T	S				T	T								S	S	S							T	T		B												G	G	G
	.
Sequence	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)