Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77732
DateThu Jan 5 12:32:14 GMT 2012
Unique Job ID58853ab7e005dd47

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1mkmA_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr
Confidence and coverage
Confidence:100.0% Coverage: 94%
245 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELRRQRFLSLDHQ
Secondary structure 
SS confidence 
Disorder  ???????
??
?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  ENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCHLGIIDNGSAYYILKVESS
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  ATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGLVWEQATPTTITHPQQLHEEL
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  ARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260
Sequence  CARDISRLLGWKSPFDLQAS
Secondary structure 
SS confidence 
Disorder 
?
??????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1mkm chain A

3D model

Region: 7 - 251
Aligned: 245
Modelled: 245
Confidence: 100.0%
Identity: 29%
PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr

Phyre2

PDB 2g7u chain B

3D model

Region: 4 - 252
Aligned: 248
Modelled: 249
Confidence: 100.0%
Identity: 21%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1

Phyre2

PDB 3r4k chain D

3D model

Region: 9 - 257
Aligned: 247
Modelled: 249
Confidence: 100.0%
Identity: 19%
PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution

Phyre2

PDB 3mq0 chain A

3D model

Region: 3 - 251
Aligned: 240
Modelled: 249
Confidence: 100.0%
Identity: 25%
PDB header:transcription repressor
Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon;
PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr

Phyre2

PDB 2ia2 chain D

3D model

Region: 7 - 253
Aligned: 242
Modelled: 247
Confidence: 100.0%
Identity: 24%
PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1

Phyre2

PDB 2o0y chain B

3D model

Region: 5 - 255
Aligned: 243
Modelled: 251
Confidence: 100.0%
Identity: 21%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.

Phyre2

PDB 2xro chain E

3D model

Region: 8 - 250
Aligned: 236
Modelled: 243
Confidence: 100.0%
Identity: 20%
PDB header:dna-binding protein/dna
Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator

Phyre2

PDB 1tf1 chain A

3D model

Region: 71 - 253
Aligned: 183
Modelled: 183
Confidence: 100.0%
Identity: 27%
Fold: Profilin-like
Superfamily: GAF domain-like
Family: IclR ligand-binding domain-like

Phyre2

PDB 1mkm chain A domain 2

3D model

Region: 81 - 251
Aligned: 171
Modelled: 171
Confidence: 100.0%
Identity: 32%
Fold: Profilin-like
Superfamily: GAF domain-like
Family: IclR ligand-binding domain-like

Phyre2

PDB 3obf chain A

3D model

Region: 78 - 254
Aligned: 176
Modelled: 177
Confidence: 100.0%
Identity: 18%
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator, iclr family;
PDBTitle: crystal structure of putative transcriptional regulator, iclr family;2 targeted domain 129...302

Phyre2

PDB 2o9a chain A domain 1

3D model

Region: 78 - 251
Aligned: 174
Modelled: 174
Confidence: 100.0%
Identity: 26%
Fold: Profilin-like
Superfamily: GAF domain-like
Family: IclR ligand-binding domain-like

Phyre2

PDB 1ysq chain A

3D model

Region: 79 - 255
Aligned: 177
Modelled: 177
Confidence: 100.0%
Identity: 26%
PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj;
PDBTitle: the crystal structure of transcriptional regulator yaij

Phyre2

PDB 1ysp chain A

3D model

Region: 80 - 251
Aligned: 164
Modelled: 172
Confidence: 100.0%
Identity: 36%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator kdgr;
PDBTitle: crystal structure of the c-terminal domain of e. coli transcriptional2 regulator kdgr.

Phyre2

PDB 3d3o chain A

3D model

Region: 84 - 253
Aligned: 169
Modelled: 170
Confidence: 100.0%
Identity: 11%
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator, icir family;
PDBTitle: crystal structure of the effector domain of the putative2 transcriptional regulator iclr from acinetobacter sp. adp1

Phyre2

PDB 3bjn chain A

3D model

Region: 75 - 245
Aligned: 162
Modelled: 164
Confidence: 100.0%
Identity: 22%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, putative;
PDBTitle: crystal structure of c-terminal domain of putative transcriptional2 regulator from vibrio cholerae, targeted domain 79-240

Phyre2

PDB 1mkm chain A domain 1

3D model

Region: 7 - 80
Aligned: 74
Modelled: 74
Confidence: 99.7%
Identity: 22%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Transcriptional regulator IclR, N-terminal domain

Phyre2

PDB 2quf chain B

3D model

Region: 14 - 195
Aligned: 181
Modelled: 182
Confidence: 99.0%
Identity: 12%
PDB header:transcription
Chain: B: PDB Molecule:transcription factor pf0095;
PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus

Phyre2

PDB 2h09 chain A

3D model

Region: 8 - 90
Aligned: 83
Modelled: 83
Confidence: 98.4%
Identity: 12%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli

Phyre2

PDB 1fx7 chain C

3D model

Region: 1 - 85
Aligned: 83
Modelled: 85
Confidence: 98.3%
Identity: 18%
PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis

Phyre2

PDB 2it0 chain A

3D model

Region: 7 - 86
Aligned: 80
Modelled: 80
Confidence: 98.3%
Identity: 16%
PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii

Phyre2
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c1mkmA_
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c2g7uB_
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c3r4kD_
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c3mq0A_
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c2ia2D_
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c2o0yB_
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c2xroE_
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d1tf1a_
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d1mkma2
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c3obfA_
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d2o9aa1
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c1ysqA_
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c1yspA_
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c3d3oA_
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c3bjnA_
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d1mkma1
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c2qufB_
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c2h09A_
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c1fx7C_
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c2it0A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1mkmA_
100.0 29 PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr
2c2g7uB_
100.0 21 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
3c3r4kD_
100.0 19 PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
4c3mq0A_
100.0 25 PDB header:transcription repressor
Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon;
PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr
5c2ia2D_
100.0 24 PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1
6c2o0yB_
100.0 21 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.
7c2xroE_
100.0 20 PDB header:dna-binding protein/dna
Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator
8d1tf1a_
100.0 27 Fold:Profilin-like
Superfamily:GAF domain-like
Family:IclR ligand-binding domain-like
9d1mkma2
100.0 32 Fold:Profilin-like
Superfamily:GAF domain-like
Family:IclR ligand-binding domain-like
10c3obfA_
100.0 18 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator, iclr family;
PDBTitle: crystal structure of putative transcriptional regulator, iclr family;2 targeted domain 129...302
11d2o9aa1
100.0 26 Fold:Profilin-like
Superfamily:GAF domain-like
Family:IclR ligand-binding domain-like
12c1ysqA_
100.0 26 PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj;
PDBTitle: the crystal structure of transcriptional regulator yaij
13c1yspA_
100.0 36 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator kdgr;
PDBTitle: crystal structure of the c-terminal domain of e. coli transcriptional2 regulator kdgr.
14c3d3oA_
100.0 11 PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator, icir family;
PDBTitle: crystal structure of the effector domain of the putative2 transcriptional regulator iclr from acinetobacter sp. adp1
15c3bjnA_
100.0 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, putative;
PDBTitle: crystal structure of c-terminal domain of putative transcriptional2 regulator from vibrio cholerae, targeted domain 79-240
16d1mkma1
99.7 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
17c2qufB_
99.0 12 PDB header:transcription
Chain: B: PDB Molecule:transcription factor pf0095;
PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus
18c2h09A_
98.4 12 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator mntr;
PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli
19c1fx7C_
98.3 18 PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis
20c2it0A_
98.3 16 PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
21c1f5tA_
not modelled 98.3 13 PDB header:transcription/dna
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence
22c1g3wA_
not modelled 98.2 14 PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
23c2oqgA_
not modelled 98.2 15 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein;
PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
24c2qwwB_
not modelled 98.2 16 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
25c2wteB_
not modelled 98.2 16 PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
26d1biaa1
not modelled 98.1 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
27c3cuoB_
not modelled 98.1 16 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
28c3g3zA_
not modelled 98.1 20 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
29c3f6vA_
not modelled 98.1 12 PDB header:transcription regulator
Chain: A: PDB Molecule:possible transcriptional regulator, arsr family
PDBTitle: crystal structure of possible transcriptional regulator for2 arsenical resistance
30c2x4hA_
not modelled 98.1 9 PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
31d1ub9a_
not modelled 98.0 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
32d2hr3a1
not modelled 98.0 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
33d1lnwa_
not modelled 98.0 10 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
34c3f6oB_
not modelled 98.0 9 PDB header:transcription regulator
Chain: B: PDB Molecule:probable transcriptional regulator, arsr family
PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
35c3bj6B_
not modelled 98.0 12 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
36d2d1ha1
not modelled 98.0 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
37c2nyxB_
not modelled 98.0 18 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
38d1ku9a_
not modelled 97.9 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
39c2fa5B_
not modelled 97.9 13 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
40d1j5ya1
not modelled 97.9 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
41c3ctaA_
not modelled 97.9 18 PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase;
PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum
42c3jthA_
not modelled 97.9 19 PDB header:transcription
Chain: A: PDB Molecule:transcription activator hlyu;
PDBTitle: crystal structure of a transcriptional regulator hlyu from2 vibrio vulnificus cmcp6
43c3hruA_
not modelled 97.9 14 PDB header:transcription
Chain: A: PDB Molecule:metalloregulator scar;
PDBTitle: crystal structure of scar with bound zn2+
44c3s2wB_
not modelled 97.9 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the crystal structure of a marr transcriptional regulator from2 methanosarcina mazei go1
45d3ctaa1
not modelled 97.9 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
46c3pqkD_
not modelled 97.9 18 PDB header:transcription
Chain: D: PDB Molecule:biofilm growth-associated repressor;
PDBTitle: crystal structure of the transcriptional repressor bigr from xylella2 fastidiosa
47c2y75F_
not modelled 97.9 23 PDB header:transcription
Chain: F: PDB Molecule:hth-type transcriptional regulator cymr;
PDBTitle: the structure of cymr (yrzc) the global cysteine regulator2 of b. subtilis
48d2fbia1
not modelled 97.9 9 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
49d2a61a1
not modelled 97.9 22 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
50c1r22B_
not modelled 97.9 23 PDB header:transcription repressor
Chain: B: PDB Molecule:transcriptional repressor smtb;
PDBTitle: crystal structure of the cyanobacterial metallothionein2 repressor smtb (c14s/c61s/c121s mutant) in the zn2alpha5-3 form
51d1sfxa_
not modelled 97.8 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
52d1s3ja_
not modelled 97.8 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
53c2rdpA_
not modelled 97.8 14 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator marr;
PDBTitle: the structure of a marr family protein from bacillus2 stearothermophilus
54d1r1ua_
not modelled 97.8 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
55c3cjnA_
not modelled 97.8 12 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi
56d2etha1
not modelled 97.8 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
57c2zkzC_
not modelled 97.8 25 PDB header:transcription
Chain: C: PDB Molecule:transcriptional repressor pagr;
PDBTitle: crystal structure of the transcriptional repressor pagr of bacillus2 anthracis
58c3nrvC_
not modelled 97.8 18 PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
59c3bpxB_
not modelled 97.8 18 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of marr
60d2fxaa1
not modelled 97.8 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
61d1r1ta_
not modelled 97.8 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
62c3bddD_
not modelled 97.8 16 PDB header:transcription
Chain: D: PDB Molecule:regulatory protein marr;
PDBTitle: crystal structure of a putative multiple antibiotic-resistance2 repressor (ssu05_1136) from streptococcus suis 89/1591 at 2.20 a3 resolution
63d1z05a1
not modelled 97.8 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
64c3e6mD_
not modelled 97.8 9 PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
65c2jscB_
not modelled 97.8 19 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator rv1994c/mt2050;
PDBTitle: nmr structure of the cadmium metal-sensor cmtr from mycobacterium2 tuberculosis
66d1lj9a_
not modelled 97.8 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
67c1z6rC_
not modelled 97.8 13 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
68c3cdhB_
not modelled 97.8 11 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3
69d1jhfa1
not modelled 97.8 26 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:LexA repressor, N-terminal DNA-binding domain
70c2kkoB_
not modelled 97.7 22 PDB header:dna binding protein
Chain: B: PDB Molecule:possible transcriptional regulatory protein
PDBTitle: solution nmr structure of the homodimeric winged helix-turn-2 helix dna-binding domain (fragment 1-100) mb0332 from3 mycobacterium bovis, a possible arsr-family transcriptional4 regulator. northeast structural genomics consortium target5 mbr242e.
71c3k0lA_
not modelled 97.7 14 PDB header:transcription regulator
Chain: A: PDB Molecule:repressor protein;
PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp
72c2ev5B_
not modelled 97.7 14 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
73c2nnnB_
not modelled 97.7 13 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
74d2bv6a1
not modelled 97.7 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
75d1tw3a1
not modelled 97.7 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
76c3r0aB_
not modelled 97.7 11 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
77d2p4wa1
not modelled 97.7 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF1790-like
78d2fbha1
not modelled 97.7 19 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
79d1z6ra1
not modelled 97.7 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
80c3bjaA_
not modelled 97.6 14 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
81d1jgsa_
not modelled 97.6 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
82c3lwfD_
not modelled 97.6 20 PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator (np_470886.1)2 from listeria innocua at 2.06 a resolution
83c2gxgA_
not modelled 97.6 11 PDB header:transcription
Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator;
PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7
84c2l4aA_
not modelled 97.6 26 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
85d1stza1
not modelled 97.6 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
86c3oopA_
not modelled 97.6 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2960 protein;
PDBTitle: the structure of a protein with unknown function from listeria innocua2 clip11262
87d1z91a1
not modelled 97.6 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
88c3hrmA_
not modelled 97.6 14 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator sarz;
PDBTitle: crystal structure of staphylococcus aureus protein sarz in sulfenic2 acid form
89d1u2wa1
not modelled 97.5 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
90d3broa1
not modelled 97.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
91d2isya1
not modelled 97.5 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
92d1ulya_
not modelled 97.5 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Hypothetical protein PH1932
93c2pexA_
not modelled 97.5 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator ohrr;
PDBTitle: structure of reduced c22s ohrr from xanthamonas campestris
94c2fxaB_
not modelled 97.5 20 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
95d1xd7a_
not modelled 97.5 23 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
96c3fm5D_
not modelled 97.5 15 PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1
97c3i53A_
not modelled 97.5 25 PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of an o-methyltransferase (ncsb1) from2 neocarzinostatin biosynthesis in complex with s-adenosyl-l-3 homocysteine (sah)
98d1qzza1
not modelled 97.5 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
99c3f3xA_
not modelled 97.5 11 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family, putative;
PDBTitle: crystal structure of the transcriptional regulator bldr2 from sulfolobus solfataricus
100c3deuB_
not modelled 97.5 18 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator slya;
PDBTitle: crystal structure of transcription regulatory protein slya2 from salmonella typhimurium in complex with salicylate3 ligands
101d1g3wa1
not modelled 97.5 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Iron-dependent repressor protein
102d3deua1
not modelled 97.4 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
103c1z05A_
not modelled 97.4 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
104c2ip2B_
not modelled 97.4 17 PDB header:transferase
Chain: B: PDB Molecule:probable phenazine-specific methyltransferase;
PDBTitle: structure of the pyocyanin biosynthetic protein phzm
105c3nqoB_
not modelled 97.4 12 PDB header:transcription
Chain: B: PDB Molecule:marr-family transcriptional regulator;
PDBTitle: crystal structure of a marr family transcriptional regulator (cd1569)2 from clostridium difficile 630 at 2.20 a resolution
106c1tw3A_
not modelled 97.4 13 PDB header:transferase
Chain: A: PDB Molecule:carminomycin 4-o-methyltransferase;
PDBTitle: crystal structure of carminomycin-4-o-methyltransferase2 (dnrk) in complex with s-adenosyl-l-homocystein (sah) and3 4-methoxy-e-rhodomycin t (m-et)
107d1okra_
not modelled 97.3 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
108d2cfxa1
not modelled 97.3 7 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
109c3k69A_
not modelled 97.3 11 PDB header:transcription
Chain: A: PDB Molecule:putative transcription regulator;
PDBTitle: crystal structure of a putative transcriptional regulator (lp_0360)2 from lactobacillus plantarum at 1.95 a resolution
110d2frha1
not modelled 97.3 14 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
111d2cg4a1
not modelled 97.3 12 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
112d1ylfa1
not modelled 97.3 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
113c1stzB_
not modelled 97.3 15 PDB header:transcription
Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog;
PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution
114c3kp3B_
not modelled 97.2 15 PDB header:transcription regulator/antibiotic
Chain: B: PDB Molecule:transcriptional regulator tcar;
PDBTitle: staphylococcus epidermidis in complex with ampicillin
115d1p4xa2
not modelled 97.2 21 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
116c3tgnA_
not modelled 97.2 14 PDB header:transcription
Chain: A: PDB Molecule:adc operon repressor adcr;
PDBTitle: crystal structure of the zinc-dependent marr family transcriptional2 regulator adcr in the zn(ii)-bound state
117c2hoeA_
not modelled 97.2 20 PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution
118d2cyya1
not modelled 97.2 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
119d1i1ga1
not modelled 97.2 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
120c3dp7B_
not modelled 97.2 17 PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of sam-dependent methyltransferase from bacteroides2 vulgatus atcc 8482

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0