Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP16694
DateThu Jan 5 11:35:44 GMT 2012
Unique Job ID4076c53e4a1db51f

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2j69D_
Top template information
PDB header:hydrolase
Chain: D: PDB Molecule:bacterial dynamin-like protein;
PDBTitle: bacterial dynamin-like protein bdlp
Confidence and coverage
Confidence:100.0% Coverage: 84%
624 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAPQLALPWSQPNIAERHAMLNN
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Disorder  ?????























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???????









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   .........70.........80.........90.........100.........110.........120
Sequence  ELRKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVL
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Disorder 



?










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??



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   .........130.........140.........150.........160.........170.........180
Sequence  HFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRALMQRIENGVAFEKYYLGAQPI
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??????




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   .........190.........200.........210.........220.........230.........240
Sequence  FHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYPGQLTLLDTPGP
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   .........250.........260.........270.........280.........290.........300
Sequence  NEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFD
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Disorder 
???























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   .........310.........320.........330.........340.........350.........360
Sequence  QQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARYELANNGKLPPPEQQ
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Disorder  ??
?
??














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   .........370.........380.........390.........400.........410.........420
Sequence  RWVEDFAHAALGRRWRHADLADLEHIRHAADQLWEDSLFAQPIQALLHAAYANASLYALR
Secondary structure 


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   .........430.........440.........450.........460.........470.........480
Sequence  SAAHKLLNYAQQAREYLDFRAHGLNVACEQLRQNIHQIEESLQLLQLNQAQVSGEIKHEI
Secondary structure 
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   .........490.........500.........510.........520.........530.........540
Sequence  ELALTSANHFLRQQQDALKVQLAALFQDDSEPLSEIRTRCETLLQTAQNTISRDFTLRFA
Secondary structure 
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   .........550.........560.........570.........580.........590.........600
Sequence  ELESTLCRVLTDVIRPIEQQVKMELSESGFRPGFHFPVFHGVVPHFNTRQLFSEVISRQE
Secondary structure 
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???????
???
????
?










????
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   .........610.........620.........630.........640.........650.........660
Sequence  ATDEQSTRLGVVRETFSRWLNQPDWGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKV
Secondary structure 

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   .........670.........680.........690.........700.........710.........720
Sequence  LAEQVDESVTAGMNTFFAEFASCLTELQTRLRESLALRQQNESVVRLMQQQLQQTVMTHG
Secondary structure 
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   .........730.........740..
Sequence  WIYTDAQLLRDDIQTLFTAERY
Secondary structure 

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Disorder 















??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2j69 chain D

3D model

Region: 11 - 738
Aligned: 624
Modelled: 628
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: D: PDB Molecule:bacterial dynamin-like protein;
PDBTitle: bacterial dynamin-like protein bdlp

Phyre2

PDB 2x2f chain D

3D model

Region: 46 - 460
Aligned: 316
Modelled: 318
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: D: PDB Molecule:dynamin-1;
PDBTitle: dynamin 1 gtpase dimer, short axis form

Phyre2

PDB 2aka chain B domain 1

3D model

Region: 48 - 410
Aligned: 285
Modelled: 301
Confidence: 99.9%
Identity: 16%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 1jwy chain B

3D model

Region: 51 - 410
Aligned: 274
Modelled: 287
Confidence: 99.9%
Identity: 15%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 3zvr chain A

3D model

Region: 72 - 547
Aligned: 412
Modelled: 417
Confidence: 99.9%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:dynamin-1;
PDBTitle: crystal structure of dynamin

Phyre2

PDB 3snh chain A

3D model

Region: 48 - 568
Aligned: 420
Modelled: 429
Confidence: 99.9%
Identity: 16%
PDB header:endocytosis
Chain: A: PDB Molecule:dynamin-1;
PDBTitle: crystal structure of nucleotide-free human dynamin1

Phyre2

PDB 1tq4 chain A

3D model

Region: 9 - 336
Aligned: 195
Modelled: 199
Confidence: 99.9%
Identity: 18%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 2qpt chain A

3D model

Region: 67 - 334
Aligned: 171
Modelled: 176
Confidence: 99.9%
Identity: 18%
PDB header:endocytosis
Chain: A: PDB Molecule:eh domain-containing protein-2;
PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling

Phyre2

PDB 2j3e chain A

3D model

Region: 52 - 322
Aligned: 157
Modelled: 157
Confidence: 99.7%
Identity: 22%
PDB header:protein transport
Chain: A: PDB Molecule:t7i23.11 protein;
PDBTitle: dimerization is important for the gtpase activity of2 chloroplast translocon components attoc33 and pstoc159

Phyre2

PDB 1h65 chain A

3D model

Region: 49 - 322
Aligned: 160
Modelled: 160
Confidence: 99.7%
Identity: 20%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 1xzq chain A

3D model

Region: 14 - 464
Aligned: 264
Modelled: 279
Confidence: 99.6%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf

Phyre2

PDB 3t5d chain C

3D model

Region: 69 - 326
Aligned: 136
Modelled: 141
Confidence: 99.6%
Identity: 35%
PDB header:signaling protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of septin 7 in complex with gdp

Phyre2

PDB 2qag chain C

3D model

Region: 69 - 326
Aligned: 138
Modelled: 143
Confidence: 99.6%
Identity: 30%
PDB header:cell cycle, structural protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of human septin trimer 2/6/7

Phyre2

PDB 1mky chain A

3D model

Region: 66 - 338
Aligned: 146
Modelled: 154
Confidence: 99.6%
Identity: 27%
PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains

Phyre2

PDB 2qag chain B

3D model

Region: 69 - 326
Aligned: 132
Modelled: 139
Confidence: 99.5%
Identity: 30%
PDB header:cell cycle, structural protein
Chain: B: PDB Molecule:septin-6;
PDBTitle: crystal structure of human septin trimer 2/6/7

Phyre2

PDB 3iev chain A

3D model

Region: 71 - 338
Aligned: 149
Modelled: 150
Confidence: 99.5%
Identity: 35%
PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna

Phyre2

PDB 2e87 chain A

3D model

Region: 39 - 374
Aligned: 213
Modelled: 222
Confidence: 99.5%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp

Phyre2

PDB 1kk3 chain A

3D model

Region: 66 - 338
Aligned: 175
Modelled: 192
Confidence: 99.5%
Identity: 17%
PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+

Phyre2

PDB 1f5n chain A

3D model

Region: 56 - 725
Aligned: 524
Modelled: 534
Confidence: 99.5%
Identity: 13%
PDB header:signaling protein
Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1;
PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.

Phyre2

PDB 3ftq chain A

3D model

Region: 69 - 326
Aligned: 135
Modelled: 141
Confidence: 99.5%
Identity: 29%
PDB header:cell cycle
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of septin 2 in complex with gppnhp and2 mg2+

Phyre2
1

c2j69D_
2

c2x2fD_
3

d2akab1
4

d1jwyb_
5

c3zvrA_
6

c3snhA_
7

d1tq4a_
8

c2qptA_
9

c2j3eA_
10

d1h65a_
11

c1xzqA_
12

c3t5dC_
13

c2qagC_
14

c1mkyA_
15

c2qagB_
16

c3ievA_
17

c2e87A_
18

c1kk3A_
19

c1f5nA_
20

c3ftqA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2j69D_



100.0 15 PDB header:hydrolase
Chain: D: PDB Molecule:bacterial dynamin-like protein;
PDBTitle: bacterial dynamin-like protein bdlp
2c2x2fD_



100.0 19 PDB header:hydrolase
Chain: D: PDB Molecule:dynamin-1;
PDBTitle: dynamin 1 gtpase dimer, short axis form
3d2akab1



99.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
4d1jwyb_



99.9 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
5c3zvrA_



99.9 14 PDB header:hydrolase
Chain: A: PDB Molecule:dynamin-1;
PDBTitle: crystal structure of dynamin
6c3snhA_



99.9 16 PDB header:endocytosis
Chain: A: PDB Molecule:dynamin-1;
PDBTitle: crystal structure of nucleotide-free human dynamin1
7d1tq4a_



99.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
8c2qptA_



99.9 18 PDB header:endocytosis
Chain: A: PDB Molecule:eh domain-containing protein-2;
PDBTitle: crystal structure of an ehd atpase involved in membrane remodelling
9c2j3eA_



99.7 22 PDB header:protein transport
Chain: A: PDB Molecule:t7i23.11 protein;
PDBTitle: dimerization is important for the gtpase activity of2 chloroplast translocon components attoc33 and pstoc159
10d1h65a_



99.7 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
11c1xzqA_



99.6 24 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
12c3t5dC_



99.6 35 PDB header:signaling protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of septin 7 in complex with gdp
13c2qagC_



99.6 30 PDB header:cell cycle, structural protein
Chain: C: PDB Molecule:septin-7;
PDBTitle: crystal structure of human septin trimer 2/6/7
14c1mkyA_



99.6 27 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
15c2qagB_



99.5 30 PDB header:cell cycle, structural protein
Chain: B: PDB Molecule:septin-6;
PDBTitle: crystal structure of human septin trimer 2/6/7
16c3ievA_



99.5 35 PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
17c2e87A_



99.5 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
18c1kk3A_



99.5 17 PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+
19c1f5nA_



99.5 13 PDB header:signaling protein
Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1;
PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
20c3ftqA_



99.5 29 PDB header:cell cycle
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of septin 2 in complex with gppnhp and2 mg2+
21c1wf3A_



not modelled 99.5 29 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
22c2qa5A_



not modelled 99.5 31 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of sept2 g-domain
23c2hjgA_



not modelled 99.5 24 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
24c2plfA_



not modelled 99.5 15 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
25d2dy1a2



not modelled 99.5 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
26c2qthA_



not modelled 99.5 22 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
27c2xtnA_



not modelled 99.5 19 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of gtp-bound human gimap2, amino acid2 residues 1-234
28c2xtpA_



not modelled 99.4 23 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
29c1s0uA_



not modelled 99.4 19 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: eif2gamma apo
30c3gehA_



not modelled 99.4 31 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
31c3i8sC_



not modelled 99.4 26 PDB header:transport protein
Chain: C: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of the cytosolic domain of e. coli feob, nucleotide-free2 form
32c3a1vB_



not modelled 99.4 20 PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form
33d2c78a3



not modelled 99.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
34d1f60a3



not modelled 99.4 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
35c3lx8A_



not modelled 99.4 25 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
36c2bvnB_



not modelled 99.3 21 PDB header:elongation factor
Chain: B: PDB Molecule:elongation factor tu;
PDBTitle: e. coli ef-tu:gdpnp in complex with the antibiotic2 enacyloxin iia
37c1egaB_



not modelled 99.3 26 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
38c1d2eA_



not modelled 99.3 21 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
39c3lxwA_



not modelled 99.3 22 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 1;
PDBTitle: crystal structure of human gtpase imap family member 1
40c3md0A_



not modelled 99.3 18 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
41c3p1jC_



not modelled 99.3 22 PDB header:hydrolase
Chain: C: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
42c3lxxA_



not modelled 99.3 21 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 4;
PDBTitle: crystal structure of human gtpase imap family member 4
43d2p67a1



not modelled 99.3 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
44c1mj1A_



not modelled 99.3 18 PDB header:ribosome
Chain: A: PDB Molecule:elongation factor tu;
PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome
45c1udxA_



not modelled 99.3 29 PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
46c3ibyA_



not modelled 99.3 31 PDB header:transport protein
Chain: A: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of cytosolic domain of l. pneumophila feob
47c3k53B_



not modelled 99.3 26 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus
48c1zunB_



not modelled 99.2 18 PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylate transferase, subunit
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
49d1zunb3



not modelled 99.2 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
50c2qagA_



not modelled 99.2 24 PDB header:cell cycle, structural protein
Chain: A: PDB Molecule:septin-2;
PDBTitle: crystal structure of human septin trimer 2/6/7
51d2bv3a2



not modelled 99.2 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
52c2ywfA_



not modelled 99.2 21 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
53c2wwwB_



not modelled 99.2 17 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
54c3p27A_



not modelled 99.2 22 PDB header:signaling protein
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: crystal structure of a translational gtpase (gdp form)
55c3degC_



not modelled 99.2 21 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
56c1wb1C_



not modelled 99.2 21 PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
57d1d2ea3



not modelled 99.2 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
58c1skqB_



not modelled 99.2 23 PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-alpha;
PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp
59d1s0ua3



not modelled 99.2 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
60c2elfA_



not modelled 99.1 14 PDB header:translation
Chain: A: PDB Molecule:protein translation elongation factor 1a;
PDBTitle: crystal structure of the selb-like elongation factor ef-pyl2 from methanosarcina mazei
61c3qq5A_



not modelled 99.1 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf
62c3nxsA_



not modelled 99.1 15 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
63c3r7wC_



not modelled 99.1 17 PDB header:protein transport
Chain: C: PDB Molecule:gtp-binding protein gtr1;
PDBTitle: crystal structure of gtr1p-gtr2p complex
64c1g7cA_



not modelled 99.1 17 PDB header:translation
Chain: A: PDB Molecule:elongation factor 1-alpha;
PDBTitle: yeast eef1a:eef1ba in complex with gdpnp
65c2h5eB_



not modelled 99.1 34 PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor rf-3;
PDBTitle: crystal structure of e.coli polypeptide release factor rf3
66d1ni3a1



not modelled 99.1 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
67d1n0ua2



not modelled 99.1 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
68c1lnzA_



not modelled 99.1 22 PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein
69c2dy1A_



not modelled 99.0 22 PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus
70d1kk1a3



not modelled 99.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
71c3p1jB_



not modelled 99.0 19 PDB header:hydrolase
Chain: B: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of human gtpase imap family member 2 in the2 nucleotide-free state
72c3pqcA_



not modelled 99.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:probable gtp-binding protein engb;
PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp
73c1g7tA_



not modelled 99.0 19 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
74c2bm0A_



not modelled 99.0 26 PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
75d2qm8a1



not modelled 99.0 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
76d1jala1



not modelled 99.0 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
77d1efca3



not modelled 99.0 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
78c3mmpC_



not modelled 98.9 24 PDB header:transferase
Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts;
PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
79c3izyP_



not modelled 98.9 23 PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2
80c2b92A_



not modelled 98.9 21 PDB header:signaling protein
Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1;
PDBTitle: crystal-structure of the n-terminal large gtpase domain of human2 guanylate binding protein 1 (hgbp1) in complex with gdp/alf3
81c2q3fB_



not modelled 98.9 17 PDB header:protein binding
Chain: B: PDB Molecule:ras-related gtp-binding protein d;
PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp
82c1jalA_



not modelled 98.9 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ychf protein;
PDBTitle: ychf protein (hi0393)
83c1zo1I_



not modelled 98.9 25 PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
84c1ni3A_



not modelled 98.9 30 PDB header:hydrolase
Chain: A: PDB Molecule:ychf gtp-binding protein;
PDBTitle: structure of the schizosaccharomyces pombe ychf gtpase
85c2xexA_



not modelled 98.8 29 PDB header:translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of staphylococcus aureus elongation factor2 g
86c3agqA_



not modelled 98.8 22 PDB header:translation,transferase
Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q
PDBTitle: structure of viral polymerase form ii
87d1svia_



not modelled 98.8 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
88d1f5na2



not modelled 98.8 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
89c3tr5C_



not modelled 98.8 31 PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
90d1wf3a1



not modelled 98.8 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
91d2qn6a3



not modelled 98.8 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
92c2gedB_



not modelled 98.8 16 PDB header:protein transport, signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor beta
PDBTitle: signal recognition particle receptor beta-subunit in2 nucleotide-free dimerized form
93c3geiB_



not modelled 98.8 22 PDB header:hydrolase
Chain: B: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
94d1wb1a4



not modelled 98.8 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
95c3izq1_



not modelled 98.8 19 PDB header:ribosomal protein,hydrolase
Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome
96c2rdo7_



not modelled 98.8 29 PDB header:ribosome
Chain: 7: PDB Molecule:elongation factor g;
PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound
97c3lvrE_



not modelled 98.8 19 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
98c3q5dA_



not modelled 98.7 26 PDB header:hydrolase
Chain: A: PDB Molecule:atlastin-1;
PDBTitle: crystal structure of human atlastin-1 (residues 1-447) bound to gdp,2 crystal form 1
99c2qu8A_



not modelled 98.7 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nucleolar gtp-binding protein 1;
PDBTitle: crystal structure of putative nucleolar gtp-binding protein 1 pff0625w2 from plasmodium falciparum
100c3dpuA_



not modelled 98.7 25 PDB header:signaling protein
Chain: A: PDB Molecule:rab family protein;
PDBTitle: roccor domain tandem of rab family protein (roco)
101c2wkqA_



not modelled 98.7 17 PDB header:transferase, cell adhesion
Chain: A: PDB Molecule:nph1-1, ras-related c3 botulinum toxin substrate
PDBTitle: structure of a photoactivatable rac1 containing the lov22 c450a mutant
102c2wsmB_



not modelled 98.7 15 PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus
103d1puia_



not modelled 98.7 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
104d1mkya2



not modelled 98.7 28 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
105d1egaa1



not modelled 98.6 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
106c2hf9A_



not modelled 98.6 16 PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form
107d1nrjb_



not modelled 98.6 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
108c1r5nA_



not modelled 98.6 26 PDB header:translation
Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp-
PDBTitle: crystal structure analysis of sup35 complexed with gdp
109c3b8hA_



not modelled 98.6 22 PDB header:biosynthetic protein/transferase
Chain: A: PDB Molecule:elongation factor 2;
PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex
110d1jnya3



not modelled 98.6 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
111c3o47A_



not modelled 98.6 26 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
112d1zcaa2



not modelled 98.6 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
113c1zn0B_



not modelled 98.6 27 PDB header:translation/biosynthetic protein/rna
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: coordinates of rrf and ef-g fitted into cryo-em map of the2 50s subunit bound with both ef-g (gdpnp) and rrf
114c3cb4D_



not modelled 98.6 23 PDB header:translation
Chain: D: PDB Molecule:gtp-binding protein lepa;
PDBTitle: the crystal structure of lepa
115c2ohfA_



not modelled 98.6 25 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein 9;
PDBTitle: crystal structure of human ola1 in complex with amppcp
116c2dwqB_



not modelled 98.5 31 PDB header:hydrolase
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: thermus thermophilus ychf gtp-binding protein
117c3mcaA_



not modelled 98.5 34 PDB header:translation regulation/hydrolase
Chain: A: PDB Molecule:elongation factor 1 alpha-like protein;
PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay
118d1r5ba3



not modelled 98.5 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
119d2cxxa1



not modelled 98.5 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
120d1yrba1



not modelled 98.5 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0