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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2x2fD_

Fold library idPDB HeaderMoleculeTitle
c2x2fD_PDB header: hydrolaseChain: D: PDB Molecule: dynamin-1;PDBTitle: dynamin 1 gtpase dimer, short axis form


Added to library: Sat Aug 28 23:14:16 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EFSXEDLIPLVNRLQDAFSADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT
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Known secondary structure (DSSP)


GGGG








BTTSSTTT
SS
S


SSS


S

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGXTKVPVGD
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Known secondary structure (DSSP) S
TTSTT

B


SSS



S
TT

S


B
SS

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence QPPDIEFQIRDXLXQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLXDEGTDAR
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Known secondary structure (DSSP)

TTTSTTTTS
GGG

TT
SS
GGGS
TT


 .........220.........230.........240.........250.........260.........270.........280
Sequence DVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTN
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Known secondary structure (DSSP) TT
SS

TT





TT


TTTGGGGGG
S
 .........290.........300.........310.........320.........330...
Sequence HIRDTLPGLRNKLQSQLLSIEKEVEEYKNFSRVDEXLRXYHALKEALSIIGNI
Predicted secondary structure








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Known secondary structure (DSSP) TT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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