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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3mcaA_

Fold library idPDB HeaderMoleculeTitle
c3mcaA_PDB header: translation regulation/hydrolaseChain: A: PDB Molecule: elongation factor 1 alpha-like protein;PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay


Added to library: Tue Oct 19 11:37:21 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KKQNPTDLVSVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEIIGDAPGHRDFISGMIAAVLV
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Known secondary structure (DSSP)







S



GGGGS





SSST



SSS




S
 .........80.........90.........100.........110.........120.........130.........140
Sequence VDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTS
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Known secondary structure (DSSP)

SSTTS
S
SSSS



GGGGTT
TTTS


GG
 .........150.........160.........170.........180.........190.........200.........210
Sequence NVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTVTGRV
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Known secondary structure (DSSP) G
SSS
SSS
S



GGGGT

S

TS


S
TTTS

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence EAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYENPVRRV
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Known secondary structure (DSSP) STT
TTTT
SSS
S

TT
SSS
GGG

TT

SSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence RSFVAEIQTFDIHGPILSGSTLVLHLGRTVTSVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLA
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Known secondary structure (DSSP) S
S
SS
TT
SS
SSSS

S
SS
SSS


T
 .........360.........370.......
Sequence EECPALGRFILRRSGDTVAAGIVKELC
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Known secondary structure (DSSP) TT
SSSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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