Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	T	V	S	M	R	D	M	L	K	A	G	V	H	F	G	H	Q	T	R	Y	W	N	P	K	M	K	P	F	I	F	G	A	R	N	K	V	H	I	I	N	L	E	K	T	V	P	M	F	N	E	A	L	A	E	L	N	K	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	S	R	K	G	K	I	L	F	V	G	T	K	R	A	A	S	E	A	V	K	D	A	A	L	S	C	D	Q	F	F	V	N	H	R	W	L	G	G	M	L	T	N	W	K	T	V	R	Q	S	I	K	R	L	K	D	L	E	T	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	Q	D	G	T	F	D	K	L	T	K	K	E	A	L	M	R	T	R	E	L	E	K	L	E	N	S	L	G	G	I	K	D	M	G	G	L	P	D	A	L	F	V	I	D	A	D	H	E	H	I	A	I	K	E	A	N	N	L	G
Secondary structure
SS confidence
Disorder				?	?	?	?											?	?	?												?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	P	V	F	A	I	V	D	T	N	S	D	P	D	G	V	D	F	V	I	P	G	N	D	D	A	I	R	A	V	T	L	Y	L	G	A	V	A	A	T	V	R	E	G	R	S	Q	D	L	A	S	Q	A	E	E	S	F	V	E	A
Secondary structure
SS confidence
Disorder																																																	?		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.
Sequence		E
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2uub chain B domain 1 Region: 6 - 238 Aligned: 233 Modelled: 233 Confidence: 100.0% Identity: 42% Fold: Flavodoxin-like Superfamily: Ribosomal protein S2 Family: Ribosomal protein S2 Phyre2 PDB 3bbn chain B Region: 3 - 228 Aligned: 226 Modelled: 226 Confidence: 100.0% Identity: 41% PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Phyre2 PDB 2gy9 chain B domain 1 Region: 9 - 225 Aligned: 217 Modelled: 217 Confidence: 100.0% Identity: 100% Fold: Flavodoxin-like Superfamily: Ribosomal protein S2 Family: Ribosomal protein S2 Phyre2 PDB 3bch chain A Region: 1 - 241 Aligned: 190 Modelled: 195 Confidence: 100.0% Identity: 26% PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor Phyre2 PDB 3iz6 chain A Region: 1 - 239 Aligned: 190 Modelled: 193 Confidence: 100.0% Identity: 28% PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 1vi6 chain A Region: 3 - 235 Aligned: 183 Modelled: 187 Confidence: 100.0% Identity: 31% Fold: Flavodoxin-like Superfamily: Ribosomal protein S2 Family: Ribosomal protein S2 Phyre2 PDB 2xzn chain B Region: 5 - 239 Aligned: 187 Modelled: 189 Confidence: 100.0% Identity: 29% PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Phyre2 PDB 3izb chain A Region: 1 - 241 Aligned: 191 Modelled: 195 Confidence: 100.0% Identity: 27% PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 2zkq chain B Region: 5 - 240 Aligned: 186 Modelled: 189 Confidence: 100.0% Identity: 24% PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 1s1h chain B Region: 7 - 236 Aligned: 181 Modelled: 184 Confidence: 100.0% Identity: 29% PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Phyre2 PDB 1x94 chain A Region: 40 - 223 Aligned: 143 Modelled: 143 Confidence: 97.6% Identity: 19% Fold: SIS domain Superfamily: SIS domain Family: mono-SIS domain Phyre2 PDB 1tk9 chain A Region: 42 - 223 Aligned: 156 Modelled: 156 Confidence: 97.1% Identity: 21% Fold: SIS domain Superfamily: SIS domain Family: mono-SIS domain Phyre2 PDB 2x3y chain A Region: 44 - 223 Aligned: 154 Modelled: 154 Confidence: 97.1% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei Phyre2 PDB 3sho chain A Region: 42 - 235 Aligned: 148 Modelled: 150 Confidence: 95.8% Identity: 19% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) Phyre2 PDB 1x92 chain A Region: 43 - 224 Aligned: 156 Modelled: 156 Confidence: 95.5% Identity: 18% Fold: SIS domain Superfamily: SIS domain Family: mono-SIS domain Phyre2 PDB 1nri chain A Region: 43 - 227 Aligned: 161 Modelled: 165 Confidence: 94.5% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae Phyre2 PDB 1nri chain A Region: 43 - 227 Aligned: 161 Modelled: 165 Confidence: 94.5% Identity: 16% Fold: SIS domain Superfamily: SIS domain Family: mono-SIS domain Phyre2 PDB 1m3s chain A Region: 42 - 226 Aligned: 134 Modelled: 135 Confidence: 93.6% Identity: 19% Fold: SIS domain Superfamily: SIS domain Family: mono-SIS domain Phyre2 PDB 2yva chain B Region: 43 - 223 Aligned: 156 Modelled: 164 Confidence: 93.1% Identity: 19% PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa Phyre2 PDB 2aml chain B Region: 25 - 235 Aligned: 158 Modelled: 153 Confidence: 92.5% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:sis domain protein; PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution Phyre2 1 d2uubb1 2 c3bbnB_ 3 d2gy9b1 4 c3bchA_ 5 c3iz6A_ 6 d1vi6a_ 7 c2xznB_ 8 c3izbA_ 9 c2zkqb_ 10 c1s1hB_ 11 d1x94a_ 12 d1tk9a_ 13 c2x3yA_ 14 c3shoA_ 15 d1x92a_ 16 c1nriA_ 17 d1nria_ 18 d1m3sa_ 19 c2yvaB_ 20 c2amlB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2uubb1 100.0 42 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 2 c3bbnB_ 100.0 41 PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 3 d2gy9b1 100.0 100 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 4 c3bchA_ 100.0 26 PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor 5 c3iz6A_ 100.0 28 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 6 d1vi6a_ 100.0 31 Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2 7 c2xznB_ 100.0 29 PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 8 c3izbA_ 100.0 27 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 9 c2zkqb_ 100.0 24 PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 10 c1s1hB_ 100.0 29 PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 11 d1x94a_ 97.6 19 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 12 d1tk9a_ 97.1 21 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 13 c2x3yA_ 97.1 17 PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei 14 c3shoA_ 95.8 19 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain) 15 d1x92a_ 95.5 18 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 16 c1nriA_ 94.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae 17 d1nria_ 94.5 16 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 18 d1m3sa_ 93.6 19 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 19 c2yvaB_ 93.1 19 PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa 20 c2amlB_ 92.5 13 PDB header:transferase Chain: B: PDB Molecule:sis domain protein; PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution 21 d1vima_ not modelled 92.1 19 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 22 c3knzA_ not modelled 90.1 18 PDB header:sugar binding protein Chain: A: PDB Molecule:putative sugar binding protein; PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution 23 c3trjC_ not modelled 89.6 18 PDB header:isomerase Chain: C: PDB Molecule:phosphoheptose isomerase; PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis 24 c3fxaA_ not modelled 86.2 17 PDB header:sugar binding protein Chain: A: PDB Molecule:sis domain protein; PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution 25 c2a3nA_ not modelled 85.6 17 PDB header:sugar binding protein Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase; PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution 26 c2xhzC_ not modelled 85.4 16 PDB header:isomerase Chain: C: PDB Molecule:arabinose 5-phosphate isomerase; PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography 27 c3c65A_ not modelled 83.7 12 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5'2 endonuclease domain 28 c3cvjB_ not modelled 78.6 14 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 29 c2nrrA_ not modelled 75.1 21 PDB header:hydrolase Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal rnaseh endonuclase2 domain of uvrc 30 d1jeoa_ not modelled 74.4 24 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 31 c3hgtA_ not modelled 73.8 17 PDB header:transcription Chain: A: PDB Molecule:hda1 complex subunit 3; PDBTitle: structural and functional studies of the yeast class ii hda12 hdac complex 32 d1j5xa_ not modelled 72.0 10 Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain 33 c3etnD_ not modelled 71.5 16 PDB header:isomerase Chain: D: PDB Molecule:putative phosphosugar isomerase involved in capsule PDBTitle: crystal structure of putative phosphosugar isomerase involved in2 capsule formation (yp_209877.1) from bacteroides fragilis nctc 93433 at 1.70 a resolution 34 c3g68A_ not modelled 69.4 13 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of a putative phosphosugar isomerase (cd3275) from2 clostridium difficile 630 at 1.80 a resolution 35 d1kzyc2 not modelled 66.5 20 Fold:BRCT domain Superfamily:BRCT domain Family:53BP1 36 c3cf4A_ not modelled 61.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit; PDBTitle: structure of the codh component of the m. barkeri acds complex 37 c3ga2A_ not modelled 60.3 29 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease_v (bsu36170) from2 bacillus subtilis, northeast structural genomics3 consortium target sr624 38 d1pjqa1 not modelled 59.4 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Siroheme synthase N-terminal domain-like 39 c2r7aC_ not modelled 57.9 11 PDB header:transport protein Chain: C: PDB Molecule:bacterial heme binding protein; PDBTitle: crystal structure of a periplasmic heme binding protein2 from shigella dysenteriae 40 d2f9ya1 not modelled 55.5 22 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 41 c2nrzB_ not modelled 54.9 22 PDB header:hydrolase Chain: B: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the c-terminal half of uvrc bound to2 its catalytic divalent cation 42 c2f9iC_ not modelled 54.7 33 PDB header:transferase Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 43 c2w36B_ not modelled 50.4 21 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair 44 d1l7ba_ not modelled 49.3 21 Fold:BRCT domain Superfamily:BRCT domain Family:DNA ligase 45 d1pixa3 not modelled 48.4 21 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 46 c3gocB_ not modelled 44.2 19 PDB header:hydrolase Chain: B: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease v (sav1684) from streptomyces2 avermitilis. northeast structural genomics consortium target svr196 47 c2zj3A_ not modelled 44.0 17 PDB header:transferase Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase 48 c1pixB_ not modelled 43.1 23 PDB header:lyase Chain: B: PDB Molecule:glutaconyl-coa decarboxylase a subunit; PDBTitle: crystal structure of the carboxyltransferase subunit of the2 bacterial ion pump glutaconyl-coenzyme a decarboxylase 49 c1xnwD_ not modelled 42.3 20 PDB header:ligase Chain: D: PDB Molecule:propionyl-coa carboxylase complex b subunit; PDBTitle: acyl-coa carboxylase beta subunit from s. coelicolor (pccb),2 apo form #2, mutant d422i 50 d1j6ua1 not modelled 42.0 18 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 51 c2vpiA_ not modelled 40.8 21 PDB header:ligase Chain: A: PDB Molecule:gmp synthase; PDBTitle: human gmp synthetase - glutaminase domain 52 d1p3da1 not modelled 40.6 18 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 53 c3n6rF_ not modelled 40.0 15 PDB header:ligase Chain: F: PDB Molecule:propionyl-coa carboxylase, beta subunit; PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc) 54 d1l5xa_ not modelled 39.8 30 Fold:SurE-like Superfamily:SurE-like Family:SurE-like 55 c3glmD_ not modelled 36.6 21 PDB header:lyase Chain: D: PDB Molecule:glutaconyl-coa decarboxylase subunit a; PDBTitle: glutaconyl-coa decarboxylase a subunit from clostridium2 symbiosum co-crystallized with crotonyl-coa 56 d1euca1 not modelled 34.8 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 57 d1x9ia_ not modelled 34.7 16 Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain 58 d2gv8a2 not modelled 34.4 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 59 c1keeH_ not modelled 34.1 37 PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin 60 d1xnya1 not modelled 33.8 33 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 61 d2jfga1 not modelled 33.1 18 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 62 c1vrgE_ not modelled 33.0 28 PDB header:ligase Chain: E: PDB Molecule:propionyl-coa carboxylase, beta subunit; PDBTitle: crystal structure of propionyl-coa carboxylase, beta subunit (tm0716)2 from thermotoga maritima at 2.30 a resolution 63 d1k9vf_ not modelled 32.8 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 64 d1s3la_ not modelled 32.7 26 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 65 c1s3mA_ not modelled 32.7 26 PDB header:phosphodiesterase Chain: A: PDB Molecule:hypothetical protein mj0936; PDBTitle: structural and functional characterization of a novel2 archaeal phosphodiesterase 66 d1on3a1 not modelled 32.1 22 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 67 d1o6ca_ not modelled 31.1 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDP-N-acetylglucosamine 2-epimerase 68 c3tqiB_ not modelled 30.8 18 PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii 69 c3qk7C_ not modelled 30.5 15 PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulators; PDBTitle: crystal structure of putative transcriptional regulator from yersinia2 pestis biovar microtus str. 91001 70 d1xnya2 not modelled 30.4 22 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 71 c2puwA_ not modelled 29.8 14 PDB header:transferase Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans 72 c3u9rB_ not modelled 29.5 26 PDB header:ligase Chain: B: PDB Molecule:methylcrotonyl-coa carboxylase, beta-subunit; PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc), beta subunit 73 c3euaD_ not modelled 29.4 12 PDB header:isomerase Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase; PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution 74 d1vrga1 not modelled 29.2 39 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 75 d1b74a1 not modelled 29.0 22 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 76 d2a7sa2 not modelled 28.6 21 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 77 c3bblA_ not modelled 28.4 8 PDB header:regulatory protein Chain: A: PDB Molecule:regulatory protein of laci family; PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans 78 d2f9yb1 not modelled 26.9 13 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 79 c2f9yB_ not modelled 26.9 13 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 80 d2d59a1 not modelled 26.8 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 81 d2a7sa1 not modelled 26.6 25 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 82 d1ir6a_ not modelled 26.5 25 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Exonuclease RecJ 83 c1ir6A_ not modelled 26.5 25 PDB header:hydrolase Chain: A: PDB Molecule:exonuclease recj; PDBTitle: crystal structure of exonuclease recj bound to manganese 84 d1a9xa4 not modelled 26.4 19 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 85 c1x0uB_ not modelled 26.3 32 PDB header:lyase Chain: B: PDB Molecule:hypothetical methylmalonyl-coa decarboxylase alpha subunit; PDBTitle: crystal structure of the carboxyl transferase subunit of putative pcc2 of sulfolobus tokodaii 86 d1vrga2 not modelled 26.1 32 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 87 c3cs3A_ not modelled 26.0 13 PDB header:transcription regulator Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family; PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from enterococcus faecalis 88 c2f9iD_ not modelled 26.0 15 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 89 c1on3E_ not modelled 26.0 15 PDB header:transferase Chain: E: PDB Molecule:methylmalonyl-coa carboxyltransferase 12s PDBTitle: transcarboxylase 12s crystal structure: hexamer assembly2 and substrate binding to a multienzyme core (with3 methylmalonyl-coenzyme a and methylmalonic acid bound) 90 c3o1hB_ not modelled 25.2 9 PDB header:signaling protein Chain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao 91 c3fijD_ not modelled 24.9 37 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 92 c2a7sD_ not modelled 24.7 21 PDB header:ligase Chain: D: PDB Molecule:probable propionyl-coa carboxylase beta chain 5; PDBTitle: crystal structure of the acyl-coa carboxylase, accd5, from2 mycobacterium tuberculosis 93 d1pixa2 not modelled 24.4 22 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 94 c1uheA_ not modelled 24.3 37 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 95 c1pjtB_ not modelled 24.3 15 PDB header:transferase/oxidoreductase/lyase Chain: B: PDB Molecule:siroheme synthase; PDBTitle: the structure of the ser128ala point-mutant variant of cysg,2 the multifunctional3 methyltransferase/dehydrogenase/ferrochelatase for4 siroheme synthesis 96 d1on3a2 not modelled 24.1 21 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 97 c3r74B_ not modelled 22.0 21 PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383 98 d1ka9h_ not modelled 21.8 21 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 99 d1f0ka_ not modelled 21.6 16 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:Peptidoglycan biosynthesis glycosyltransferase MurG 100 d1oi7a1 not modelled 21.3 27 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 101 c2v4uA_ not modelled 20.9 26 PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine 102 c3fkjA_ not modelled 20.4 17 PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerases; PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0