Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	G	Q	R	I	P	V	T	L	G	N	I	A	P	L	S	L	R	P	F	Q	P	G	R	I	A	L	V	C	E	G	G	G	Q	R	G	I	F	T	A	G	V	L	D	E	F	M	R	A	Q	F	N	P	F	D	L	Y	L	G	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	A	G	A	Q	N	L	S	A	F	I	C	N	Q	P	G	Y	A	R	K	V	I	M	R	Y	T	T	K	R	E	F	F	D	P	L	R	F	V	R	G	G	N	L	I	D	L	D	W	L	V	E	A	T	A	S	Q	M	P	L	Q
Secondary structure
SS confidence
Disorder																																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	D	T	A	A	R	L	F	D	S	G	K	S	F	Y	M	C	A	C	R	Q	D	D	Y	A	P	N	Y	F	L	P	T	K	Q	N	W	L	D	V	I	R	A	S	S	A	I	P	G	F	Y	R	S	G	V	S	L	E	G	I	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	L	D	G	G	I	S	D	A	I	P	V	K	E	A	A	R	Q	G	A	K	T	L	V	V	I	R	T	V	P	S	Q	M	Y	Y	T	P	Q	W	F	K	R	M	E	R	W	L	G	D	S	S	L	Q	P	L	V	N	L	V	Q
Secondary structure
SS confidence
Disorder																																?		?	?	?	?		?		?										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		H	H	E	T	S	Y	R	D	I	Q	Q	F	I	E	K	P	P	G	K	L	R	I	F	E	I	Y	P	P	K	P	L	H	S	I	A	L	G	S	R	I	P	A	L	R	E	D	Y	K	L	G	R	L	C	G	R	Y	F	L	A	T
Secondary structure
SS confidence
Disorder																																?		?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Sequence		V	G	K	L	L	T	E	K	A	P	L	T	R	H	L	V	P	V	V	T	P	E	S	I	V	I	P	P	A	P	V	A	N	D	T	L	V	A	E	V	S	D	A	P	Q	A	N	D	P	T	F	N	N	E	D	L	A
Secondary structure
SS confidence
Disorder										?	?					?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1oxw chain A Region: 21 - 313 Aligned: 287 Modelled: 289 Confidence: 100.0% Identity: 17% Fold: FabD/lysophospholipase-like Superfamily: FabD/lysophospholipase-like Family: Patatin Phyre2 PDB 1cjy chain A domain 2 Region: 18 - 207 Aligned: 188 Modelled: 189 Confidence: 99.0% Identity: 15% Fold: FabD/lysophospholipase-like Superfamily: FabD/lysophospholipase-like Family: Lysophospholipase Phyre2 PDB 1cjy chain B Region: 19 - 72 Aligned: 54 Modelled: 54 Confidence: 98.0% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:protein (cytosolic phospholipase a2); PDBTitle: human cytosolic phospholipase a2 Phyre2 PDB 3l4e chain A Region: 26 - 68 Aligned: 42 Modelled: 43 Confidence: 83.3% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e Phyre2 PDB 3i1i chain A Region: 39 - 77 Aligned: 39 Modelled: 38 Confidence: 79.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:homoserine o-acetyltransferase; PDBTitle: x-ray crystal structure of homoserine o-acetyltransferase from2 bacillus anthracis Phyre2 PDB 1mla chain A domain 1 Region: 37 - 78 Aligned: 41 Modelled: 42 Confidence: 74.7% Identity: 10% Fold: FabD/lysophospholipase-like Superfamily: FabD/lysophospholipase-like Family: FabD-like Phyre2 PDB 2b61 chain A domain 1 Region: 39 - 77 Aligned: 39 Modelled: 39 Confidence: 72.6% Identity: 13% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: O-acetyltransferase Phyre2 PDB 3rgi chain A Region: 36 - 71 Aligned: 35 Modelled: 36 Confidence: 72.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:disd protein; PDBTitle: trans-acting transferase from disorazole synthase Phyre2 PDB 2pl5 chain A domain 1 Region: 40 - 77 Aligned: 38 Modelled: 38 Confidence: 71.9% Identity: 11% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: O-acetyltransferase Phyre2 PDB 2vat chain A domain 1 Region: 39 - 77 Aligned: 39 Modelled: 39 Confidence: 71.4% Identity: 13% Fold: alpha/beta-Hydrolases Superfamily: alpha/beta-Hydrolases Family: O-acetyltransferase Phyre2 PDB 1fye chain A Region: 26 - 68 Aligned: 42 Modelled: 43 Confidence: 67.5% Identity: 26% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: Aspartyl dipeptidase PepE Phyre2 PDB 3ptw chain A Region: 36 - 71 Aligned: 35 Modelled: 36 Confidence: 67.1% Identity: 11% PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from clostridium perfringens atcc 13124 Phyre2 PDB 3en0 chain A Region: 26 - 66 Aligned: 41 Modelled: 41 Confidence: 64.9% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase Phyre2 PDB 2vav chain L Region: 40 - 77 Aligned: 37 Modelled: 38 Confidence: 63.5% Identity: 8% PDB header:transferase Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c PDBTitle: crystal structure of deacetylcephalosporin c2 acetyltransferase (dac-soak) Phyre2 PDB 3im8 chain A Region: 37 - 78 Aligned: 41 Modelled: 42 Confidence: 62.9% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase; PDBTitle: crystal structure of mcat from streptococcus pneumoniae Phyre2 PDB 3lp5 chain A Region: 42 - 76 Aligned: 34 Modelled: 35 Confidence: 59.4% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1 Phyre2 PDB 2jfk chain D Region: 37 - 83 Aligned: 46 Modelled: 47 Confidence: 58.2% Identity: 15% PDB header:transferase Chain: D: PDB Molecule:fatty acid synthase; PDBTitle: structure of the mat domain of human fas with malonyl-coa Phyre2 PDB 1znn chain F Region: 149 - 206 Aligned: 46 Modelled: 46 Confidence: 56.9% Identity: 9% PDB header:biosynthetic protein Chain: F: PDB Molecule:plp synthase; PDBTitle: structure of the synthase subunit of plp synthase Phyre2 PDB 2zyi chain B Region: 38 - 80 Aligned: 42 Modelled: 43 Confidence: 56.9% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium Phyre2 PDB 2qo3 chain A Region: 37 - 71 Aligned: 34 Modelled: 35 Confidence: 54.0% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:eryaii erythromycin polyketide synthase modules 3 and 4; PDBTitle: crystal structure of [ks3][at3] didomain from module 3 of 6-2 deoxyerthronolide b synthase Phyre2 1 d1oxwa_ 2 d1cjya2 3 c1cjyB_ 4 c3l4eA_ 5 c3i1iA_ 6 d1mlaa1 7 d2b61a1 8 c3rgiA_ 9 d2pl5a1 10 d2vata1 11 d1fyea_ 12 c3ptwA_ 13 c3en0A_ 14 c2vavL_ 15 c3im8A_ 16 c3lp5A_ 17 c2jfkD_ 18 c1znnF_ 19 c2zyiB_ 20 c2qo3A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1oxwa_ 100.0 17 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Patatin 2 d1cjya2 99.0 15 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Lysophospholipase 3 c1cjyB_ 98.0 19 PDB header:hydrolase Chain: B: PDB Molecule:protein (cytosolic phospholipase a2); PDBTitle: human cytosolic phospholipase a2 4 c3l4eA_ 83.3 26 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e 5 c3i1iA_ 79.0 18 PDB header:transferase Chain: A: PDB Molecule:homoserine o-acetyltransferase; PDBTitle: x-ray crystal structure of homoserine o-acetyltransferase from2 bacillus anthracis 6 d1mlaa1 74.7 10 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:FabD-like 7 d2b61a1 72.6 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase 8 c3rgiA_ 72.0 17 PDB header:transferase Chain: A: PDB Molecule:disd protein; PDBTitle: trans-acting transferase from disorazole synthase 9 d2pl5a1 71.9 11 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase 10 d2vata1 71.4 13 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:O-acetyltransferase 11 d1fyea_ 67.5 26 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Aspartyl dipeptidase PepE 12 c3ptwA_ 67.1 11 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from clostridium perfringens atcc 13124 13 c3en0A_ 64.9 29 PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase 14 c2vavL_ 63.5 8 PDB header:transferase Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c PDBTitle: crystal structure of deacetylcephalosporin c2 acetyltransferase (dac-soak) 15 c3im8A_ 62.9 12 PDB header:transferase Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase; PDBTitle: crystal structure of mcat from streptococcus pneumoniae 16 c3lp5A_ 59.4 24 PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1 17 c2jfkD_ 58.2 15 PDB header:transferase Chain: D: PDB Molecule:fatty acid synthase; PDBTitle: structure of the mat domain of human fas with malonyl-coa 18 c1znnF_ 56.9 9 PDB header:biosynthetic protein Chain: F: PDB Molecule:plp synthase; PDBTitle: structure of the synthase subunit of plp synthase 19 c2zyiB_ 56.9 26 PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium 20 c2qo3A_ 54.0 12 PDB header:transferase Chain: A: PDB Molecule:eryaii erythromycin polyketide synthase modules 3 and 4; PDBTitle: crystal structure of [ks3][at3] didomain from module 3 of 6-2 deoxyerthronolide b synthase 21 d1znna1 not modelled 53.4 9 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:PdxS-like 22 c3ffsC_ not modelled 52.6 24 PDB header:oxidoreductase Chain: C: PDB Molecule:inosine-5-monophosphate dehydrogenase; PDBTitle: the crystal structure of cryptosporidium parvum inosine-5'-2 monophosphate dehydrogenase 23 d1vcfa1 not modelled 52.5 27 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 24 c2a7nA_ not modelled 51.1 19 PDB header:oxidoreductase Chain: A: PDB Molecule:l(+)-mandelate dehydrogenase; PDBTitle: crystal structure of the g81a mutant of the active chimera of (s)-2 mandelate dehydrogenase 25 c2cu0B_ not modelled 50.0 26 PDB header:oxidoreductase Chain: B: PDB Molecule:inosine-5'-monophosphate dehydrogenase; PDBTitle: crystal structure of inosine-5'-monophosphate dehydrogenase from2 pyrococcus horikoshii ot3 26 c3tqeA_ not modelled 49.5 8 PDB header:transferase Chain: A: PDB Molecule:malonyl-coa-[acyl-carrier-protein] transacylase; PDBTitle: structure of the malonyl coa-acyl carrier protein transacylase (fabd)2 from coxiella burnetii 27 c3khjE_ not modelled 48.7 27 PDB header:oxidoreductase Chain: E: PDB Molecule:inosine-5-monophosphate dehydrogenase; PDBTitle: c. parvum inosine monophosphate dehydrogenase bound by inhibitor c64 28 c1jcnA_ not modelled 47.8 35 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase i; PDBTitle: binary complex of human type-i inosine monophosphate dehydrogenase2 with 6-cl-imp 29 d1jcna1 not modelled 47.5 35 Fold:TIM beta/alpha-barrel Superfamily:Inosine monophosphate dehydrogenase (IMPDH) Family:Inosine monophosphate dehydrogenase (IMPDH) 30 c2e77B_ not modelled 47.2 23 PDB header:oxidoreductase Chain: B: PDB Molecule:lactate oxidase; PDBTitle: crystal structure of l-lactate oxidase with pyruvate complex 31 d2cu0a1 not modelled 47.2 27 Fold:TIM beta/alpha-barrel Superfamily:Inosine monophosphate dehydrogenase (IMPDH) Family:Inosine monophosphate dehydrogenase (IMPDH) 32 c1kbiB_ not modelled 46.6 30 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome b2; PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme 33 d1eepa_ not modelled 46.5 28 Fold:TIM beta/alpha-barrel Superfamily:Inosine monophosphate dehydrogenase (IMPDH) Family:Inosine monophosphate dehydrogenase (IMPDH) 34 d1kbia1 not modelled 46.3 30 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 35 d1p4ca_ not modelled 46.2 19 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 36 c3g87A_ not modelled 45.8 16 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from burkholderia pseudomallei using dried seaweed as nucleant or3 protease 37 c2drhD_ not modelled 45.7 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:361aa long hypothetical d-aminopeptidase; PDBTitle: crystal structure of the ph0078 protein from pyrococcus horikoshii ot3 38 d1ufoa_ not modelled 45.3 26 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Hypothetical protein TT1662 39 c3r2gA_ not modelled 44.3 26 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine 5'-monophosphate dehydrogenase; PDBTitle: crystal structure of inosine 5' monophosphate dehydrogenase from2 legionella pneumophila 40 c1e3hA_ not modelled 44.1 12 PDB header:polyribonucleotide transferase Chain: A: PDB Molecule:guanosine pentaphosphate synthetase; PDBTitle: semet derivative of streptomyces antibioticus pnpase/gpsi2 enzyme 41 d1p0ka_ not modelled 43.5 30 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 42 d1jr1a1 not modelled 42.9 31 Fold:TIM beta/alpha-barrel Superfamily:Inosine monophosphate dehydrogenase (IMPDH) Family:Inosine monophosphate dehydrogenase (IMPDH) 43 c2hg4A_ not modelled 42.4 12 PDB header:transferase Chain: A: PDB Molecule:6-deoxyerythronolide b synthase; PDBTitle: structure of the ketosynthase-acyltransferase didomain of module 52 from debs. 44 d1uh5a_ not modelled 42.2 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 45 c3opyB_ not modelled 41.8 20 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 46 c3opyH_ not modelled 41.8 20 PDB header:transferase Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit; PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state 47 c1me9A_ not modelled 41.6 27 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh) from2 tritrichomonas foetus with imp bound 48 d1qo2a_ not modelled 41.5 19 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 49 d1tb3a1 not modelled 41.3 31 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 50 c2zrvC_ not modelled 41.2 22 PDB header:isomerase Chain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase; PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn. 51 d1pvna1 not modelled 41.1 27 Fold:TIM beta/alpha-barrel Superfamily:Inosine monophosphate dehydrogenase (IMPDH) Family:Inosine monophosphate dehydrogenase (IMPDH) 52 c1cr6A_ not modelled 40.9 6 PDB header:hydrolase Chain: A: PDB Molecule:epoxide hydrolase; PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor 53 c1vrdA_ not modelled 40.8 31 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine-5'-monophosphate dehydrogenase; PDBTitle: crystal structure of inosine-5'-monophosphate dehydrogenase (tm1347)2 from thermotoga maritima at 2.18 a resolution 54 d1vrda1 not modelled 40.6 31 Fold:TIM beta/alpha-barrel Superfamily:Inosine monophosphate dehydrogenase (IMPDH) Family:Inosine monophosphate dehydrogenase (IMPDH) 55 c2rduA_ not modelled 40.6 38 PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxyacid oxidase 1; PDBTitle: crystal structure of human glycolate oxidase in complex with2 glyoxylate 56 d1goxa_ not modelled 40.2 31 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 57 c2a7rD_ not modelled 39.9 31 PDB header:oxidoreductase Chain: D: PDB Molecule:gmp reductase 2; PDBTitle: crystal structure of human guanosine monophosphate2 reductase 2 (gmpr2) 58 c1ypfB_ not modelled 39.8 31 PDB header:oxidoreductase Chain: B: PDB Molecule:gmp reductase; PDBTitle: crystal structure of guac (ba5705) from bacillus anthracis at 1.8 a2 resolution 59 c3cdiA_ not modelled 39.7 18 PDB header:transferase Chain: A: PDB Molecule:polynucleotide phosphorylase; PDBTitle: crystal structure of e. coli pnpase 60 c2ywjA_ not modelled 39.7 36 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii 61 c2qr6A_ not modelled 39.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:imp dehydrogenase/gmp reductase; PDBTitle: crystal structure of imp dehydrogenase/gmp reductase-like protein2 (np_599840.1) from corynebacterium glutamicum atcc 13032 kitasato at3 1.50 a resolution 62 c3eenA_ not modelled 38.6 14 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acp transacylase; PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (fabd), xoo0880, from xanthomonas oryzae pv. oryzae kacc10331 63 c2qruA_ not modelled 38.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an alpha/beta hydrolase superfamily protein from2 enterococcus faecalis 64 c3n5iC_ not modelled 37.6 14 PDB header:hydrolase Chain: C: PDB Molecule:beta-peptidyl aminopeptidase; PDBTitle: crystal structure of the precursor (s250a mutant) of the n-terminal2 beta-aminopeptidase bapa 65 c1zfjA_ not modelled 37.4 23 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes 66 d1zfja1 not modelled 37.3 23 Fold:TIM beta/alpha-barrel Superfamily:Inosine monophosphate dehydrogenase (IMPDH) Family:Inosine monophosphate dehydrogenase (IMPDH) 67 d2cdqa2 not modelled 36.2 27 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 68 d1r88a_ not modelled 34.9 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Mycobacterial antigens 69 c2cuyA_ not modelled 34.9 17 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-[acyl carrier protein] transacylase; PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from thermus thermophilus hb8 70 c3ezoA_ not modelled 33.8 15 PDB header:transferase Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase; PDBTitle: crystal structure of acyl-carrier-protein s-2 malonyltransferase from burkholderia pseudomallei 1710b 71 c3fijD_ not modelled 33.0 20 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 72 d1b65a_ not modelled 32.7 8 Fold:DmpA/ArgJ-like Superfamily:DmpA/ArgJ-like Family:DmpA-like 73 d2j0wa2 not modelled 32.4 20 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 74 d1s1ma1 not modelled 32.3 27 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 75 c2w7tA_ not modelled 32.0 23 PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin 76 d1dqza_ not modelled 31.9 14 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Mycobacterial antigens 77 d2dsta1 not modelled 31.8 12 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:TTHA1544-like 78 d1vqta1 not modelled 31.8 26 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 79 d1k8qa_ not modelled 31.7 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Gastric lipase 80 c2h1yA_ not modelled 30.2 13 PDB header:transferase Chain: A: PDB Molecule:malonyl coenzyme a-acyl carrier protein transacylase; PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (mcat) from helicobacter pylori 81 d1vzwa1 not modelled 29.5 23 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 82 c2ptgA_ not modelled 29.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: crystal structure of eimeria tenella enoyl reductase 83 c2d4wA_ not modelled 29.2 12 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 84 c2qmqA_ not modelled 29.1 26 PDB header:signaling protein Chain: A: PDB Molecule:protein ndrg2; PDBTitle: crystal structure of a n-myc downstream regulated 2 protein (ndrg2,2 syld, ndr2, ai182517, au040374) from mus musculus at 1.70 a3 resolution 85 d1juba_ not modelled 29.0 27 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 86 d1hlga_ not modelled 28.8 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Gastric lipase 87 d1xm3a_ not modelled 28.8 23 Fold:TIM beta/alpha-barrel Superfamily:ThiG-like Family:ThiG-like 88 c3gg4B_ not modelled 28.6 7 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 89 c2dpnB_ not modelled 28.4 13 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 90 c3flaB_ not modelled 28.2 20 PDB header:hydrolase Chain: B: PDB Molecule:rifr; PDBTitle: rifr - type ii thioesterase from rifamycin nrps/pks biosynthetic2 pathway - form 1 91 d1rd5a_ not modelled 28.2 18 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 92 c3l80A_ not modelled 27.9 18 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein smu.1393c; PDBTitle: crystal structure of smu.1393c from streptococcus mutans ua159 93 c2cdh1_ not modelled 27.5 31 PDB header:transferase Chain: 1: PDB Molecule:enoyl reductase; PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution. 94 d2hmfa2 not modelled 27.3 21 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 95 c2o2sA_ not modelled 27.1 19 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: the structure of t. gondii enoyl acyl carrier protein reductase in2 complex with nad and triclosan 96 d1sfra_ not modelled 26.7 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Mycobacterial antigens 97 d2h7ma1 not modelled 26.5 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 98 c3fcxA_ not modelled 26.4 23 PDB header:hydrolase Chain: A: PDB Molecule:s-formylglutathione hydrolase; PDBTitle: crystal structure of human esterase d 99 d1thfd_ not modelled 26.1 21 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 100 c3k31B_ not modelled 25.8 7 PDB header:oxidoreductase Chain: B: PDB Molecule:enoyl-(acyl-carrier-protein) reductase; PDBTitle: crystal structure of eonyl-(acyl-carrier-protein) reductase from2 anaplasma phagocytophilum in complex with nad at 1.9a resolution 101 c3g25B_ not modelled 25.8 17 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 102 c2nq8B_ not modelled 25.7 19 PDB header:oxidoreductase Chain: B: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: malarial enoyl acyl acp reductase bound with inh-nad adduct 103 d1d7oa_ not modelled 25.6 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 104 c1pjaA_ not modelled 25.5 11 PDB header:hydrolase Chain: A: PDB Molecule:palmitoyl-protein thioesterase 2 precursor; PDBTitle: the crystal structure of palmitoyl protein thioesterase-2 reveals the2 basis for divergent substrate specificities of the two lysosomal3 thioesterases (ppt1 and ppt2) 105 d1pjaa_ not modelled 25.5 11 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterases 106 c3fleB_ not modelled 25.2 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:se_1780 protein; PDBTitle: se_1780 protein of unknown function from staphylococcus epidermidis. 107 d1nm2a1 not modelled 25.2 19 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:FabD-like 108 d3c8da2 not modelled 25.0 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Carboxylesterase 109 c2htmB_ not modelled 25.0 20 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiazole biosynthesis protein thig; PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8 110 c2w40C_ not modelled 24.7 19 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 111 c1qgeD_ not modelled 24.1 15 PDB header:hydrolase Chain: D: PDB Molecule:protein (triacylglycerol hydrolase); PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase 112 c3ds8A_ not modelled 23.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua 113 d1h5ya_ not modelled 23.7 26 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 114 c3e4dD_ not modelled 23.6 19 PDB header:hydrolase Chain: D: PDB Molecule:esterase d; PDBTitle: structural and kinetic study of an s-formylglutathione2 hydrolase from agrobacterium tumefaciens 115 d1y0ea_ not modelled 23.6 18 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:NanE-like 116 c3qjaA_ not modelled 23.5 35 PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form 117 c2foiB_ not modelled 23.4 19 PDB header:oxidoreductase Chain: B: PDB Molecule:enoyl-acyl carrier reductase; PDBTitle: synthesis, biological activity, and x-ray crystal structural analysis2 of diaryl ether inhibitors of malarial enoyl acp reductase. 118 c3dcjA_ not modelled 23.4 28 PDB header:transferase Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative 119 d1lh0a_ not modelled 23.1 13 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 120 c3jr2D_ not modelled 22.8 18 PDB header:biosynthetic protein Chain: D: PDB Molecule:hexulose-6-phosphate synthase sgbh; PDBTitle: x-ray crystal structure of the mg-bound 3-keto-l-gulonate-6-phosphate2 decarboxylase from vibrio cholerae o1 biovar el tor str. n16961

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0