Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	F	D	K	P	A	G	E	N	P	I	D	Q	L	K	V	V	G	R	P	H	D	R	I	D	G	P	L	K	T	T	G	T	A	R	Y	A	Y	E	W	H	E	E	A	P	N	A	A	Y	G	Y	I	V	G	S	A	I	A	K
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	R	L	T	A	L	D	T	D	A	A	Q	K	A	P	G	V	L	A	V	I	T	A	S	N	A	G	A	L	G	K	G	D	K	N	T	A	R	L	L	G	G	P	T	I	E	H	Y	H	Q	A	I	A	L	V	V	A	E	T	F
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	Q	A	R	A	A	A	S	L	V	Q	A	H	Y	R	R	N	K	G	A	Y	S	L	A	D	E	K	Q	A	V	N	Q	P	P	E	D	T	P	D	K	N	V	G	D	F	D	G	A	F	T	S	A	A	V	K	I	D	A	T	Y
Secondary structure
SS confidence
Disorder																														?	?	?	?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	T	P	D	Q	S	H	M	A	M	E	P	H	A	S	M	A	V	W	D	G	N	K	L	T	L	W	T	S	N	Q	M	I	D	W	C	R	T	D	L	A	K	T	L	K	V	P	V	E	N	V	R	I	I	S	P	Y	I	G	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	F	G	G	K	L	F	L	R	S	D	A	L	L	A	A	L	A	A	R	A	V	K	R	P	V	K	V	M	L	P	R	P	S	I	P	N	N	T	T	H	R	P	A	T	L	Q	H	L	R	I	G	A	D	Q	S	G	K	I	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	I	S	H	E	S	W	S	G	N	L	P	G	G	T	P	E	T	A	V	Q	Q	S	E	L	L	Y	A	G	A	N	R	H	T	G	L	R	L	A	T	L	D	L	P	E	G	N	A	M	R	A	P	G	E	A	P	G	L	M	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	E	I	A	I	D	E	L	A	E	K	A	G	I	D	P	V	E	F	R	I	L	N	D	T	Q	V	D	P	A	D	P	T	R	C	F	S	R	R	Q	L	I	E	C	L	R	T	G	A	D	K	F	G	W	K	Q	R	N	A	T
Secondary structure
SS confidence
Disorder																																																								?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		P	G	Q	V	R	D	G	E	W	L	V	G	H	G	V	A	A	G	F	R	N	N	L	L	E	K	S	G	A	R	V	H	L	E	Q	N	G	T	V	T	V	E	T	D	M	T	D	I	G	T	G	S	Y	T	I	L	A	Q	T	A
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		A	E	M	L	G	V	P	L	E	Q	V	A	V	H	L	G	D	S	S	F	P	V	S	A	G	S	G	G	Q	W	G	A	N	T	S	T	S	G	V	Y	A	A	C	M	K	L	R	E	M	I	A	S	A	V	G	F	D	P	E	Q
Secondary structure
SS confidence
Disorder																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Sequence		S	Q	F	A	D	G	K	I	T	N	G	T	R	S	A	T	L	H	E	A	T	A	G	G	R	L	T	A	E	E	S	I	E	F	G	T	L	S	K	E	Y	Q	Q	S	T	F	A	G	H	F	V	E	V	G	V	H	S	A	T	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
Sequence		E	V	R	V	R	R	M	L	A	V	C	A	A	G	R	I	L	N	P	K	T	A	R	S	Q	V	I	G	A	M	T	M	G	M	G	A	A	L	M	E	E	L	A	V	D	D	R	L	G	Y	F	V	N	H	D	M	A	G	Y	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Sequence		V	P	V	H	A	D	I	P	K	Q	E	V	I	F	L	D	D	T	D	P	I	S	S	P	M	K	A	K	G	V	G	E	L	G	L	C	G	V	S	A	A	I	A	N	A	V	Y	N	A	T	G	I	R	V	R	D	Y	P	I	T
Secondary structure
SS confidence
Disorder																						?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	730	.	.
Sequence		L	D	K	L	L	D	K	L	P	D	V	V
Secondary structure
SS confidence
Disorder											?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ffv chain B Region: 11 - 730 Aligned: 716 Modelled: 720 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:cutl, molybdoprotein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava Phyre2 PDB 1sb3 chain D Region: 17 - 730 Aligned: 703 Modelled: 714 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica Phyre2 PDB 2w54 chain F Region: 17 - 730 Aligned: 711 Modelled: 714 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: F: PDB Molecule:xanthine dehydrogenase; PDBTitle: crystal structure of xanthine dehydrogenase from2 rhodobacter capsulatus in complex with bound inhibitor3 pterin-6-aldehyde Phyre2 PDB 1n62 chain E Region: 13 - 730 Aligned: 714 Modelled: 718 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state Phyre2 PDB 1t3q chain B Region: 14 - 730 Aligned: 713 Modelled: 717 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: B: PDB Molecule:quinoline 2-oxidoreductase large subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 Phyre2 PDB 1wyg chain A Region: 3 - 730 Aligned: 707 Modelled: 713 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s) Phyre2 PDB 3eub chain L Region: 17 - 732 Aligned: 706 Modelled: 715 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: L: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine Phyre2 PDB 1vlb chain A Region: 4 - 729 Aligned: 708 Modelled: 726 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a Phyre2 PDB 1dgj chain A Region: 8 - 729 Aligned: 700 Modelled: 709 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774 Phyre2 PDB 1jro chain B domain 2 Region: 138 - 730 Aligned: 592 Modelled: 593 Confidence: 100.0% Identity: 24% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1rm6 chain A domain 2 Region: 141 - 730 Aligned: 581 Modelled: 590 Confidence: 100.0% Identity: 28% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1n62 chain B domain 2 Region: 141 - 730 Aligned: 588 Modelled: 590 Confidence: 100.0% Identity: 21% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1ffv chain B domain 2 Region: 134 - 730 Aligned: 595 Modelled: 597 Confidence: 100.0% Identity: 22% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1t3q chain B domain 2 Region: 160 - 730 Aligned: 569 Modelled: 571 Confidence: 100.0% Identity: 24% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1v97 chain A domain 5 Region: 140 - 730 Aligned: 583 Modelled: 590 Confidence: 100.0% Identity: 23% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1vlb chain A domain 4 Region: 142 - 729 Aligned: 570 Modelled: 588 Confidence: 100.0% Identity: 26% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 1dgj chain A domain 4 Region: 141 - 729 Aligned: 569 Modelled: 578 Confidence: 100.0% Identity: 25% Fold: Molybdenum cofactor-binding domain Superfamily: Molybdenum cofactor-binding domain Family: Molybdenum cofactor-binding domain Phyre2 PDB 3hrd chain E Region: 12 - 414 Aligned: 400 Modelled: 403 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase Phyre2 PDB 3hrd chain F Region: 429 - 730 Aligned: 301 Modelled: 302 Confidence: 100.0% Identity: 29% PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase Phyre2 PDB 1t3q chain B domain 1 Region: 16 - 162 Aligned: 144 Modelled: 147 Confidence: 100.0% Identity: 24% Fold: alpha/beta-Hammerhead Superfamily: CO dehydrogenase molybdoprotein N-domain-like Family: CO dehydrogenase molybdoprotein N-domain-like Phyre2 1 c1ffvB_ 2 c1sb3D_ 3 c2w54F_ 4 c1n62E_ 5 c1t3qB_ 6 c1wygA_ 7 c3eubL_ 8 c1vlbA_ 9 c1dgjA_ 10 d1jrob2 11 d1rm6a2 12 d1n62b2 13 d1ffvb2 14 d1t3qb2 15 d1v97a5 16 d1vlba4 17 d1dgja4 18 c3hrdE_ 19 c3hrdF_ 20 d1t3qb1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99